DY259909

Overview
NameDY259909
Unique NameDY259909
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1108
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1351 contig Ccv1_Contig1351:1..1108. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGMP_ARATH (Phosphoglucomutase, chloroplastic OS=Arabidopsis thaliana GN=PGMP PE=1 SV=2)

HSP 1 Score: 394.045 bits (1011), Expect = 8.068e-109
Identity = 190/212 (89.62%), Postives = 205/212 (96.70%), Query Frame = 2
Query:    2 VPTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSKSKAGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            VPTG+ FFGNLMDAGKLS+CGEESFGTGSDHIREKDGIWAVLAWLSI+AHRNKD KPG+KL+SV+DVVK +WATYGRNFFSRYDYEECESEGANKMI YLR+++SKSKAGD YGNYVLQFADDF+YTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKH++DAQ ALKPLIDLALSVSKL+DFTGREKP +IT
Sbjct:  412 VPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSILAHRNKDTKPGDKLVSVADVVKEYWATYGRNFFSRYDYEECESEGANKMIEYLREILSKSKAGDVYGNYVLQFADDFSYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 623          
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGMP_PEA (Phosphoglucomutase, chloroplastic OS=Pisum sativum GN=PGMP PE=2 SV=1)

HSP 1 Score: 393.66 bits (1010), Expect = 1.054e-108
Identity = 189/212 (89.15%), Postives = 202/212 (95.28%), Query Frame = 2
Query:    2 VPTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSKSKAGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            VPTG+ FFGNLMDAG LS+CGEESFGTGSDHIREKDGIWAVLAWLSI+AHRNKD KPGEKL+SVSDVVK HWATYGRNFFSRYDYEECESEGANKMI YLR+L+SKSK GDKYG+YVLQFADDF YTDPVDGSV SKQGVRFVFTDGSRII+RLSGTGSAGATVR+YIEQFEPDVSKH++DAQ ALKPLIDLALSVSKL+DFTGREKP +IT
Sbjct:  415 VPTGWKFFGNLMDAGNLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAHRNKDTKPGEKLVSVSDVVKEHWATYGRNFFSRYDYEECESEGANKMIEYLRELLSKSKPGDKYGSYVLQFADDFTYTDPVDGSVVSKQGVRFVFTDGSRIIYRLSGTGSAGATVRVYIEQFEPDVSKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 626          
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGMP_SOLTU (Phosphoglucomutase, chloroplastic OS=Solanum tuberosum GN=PGMP PE=2 SV=1)

HSP 1 Score: 392.889 bits (1008), Expect = 1.797e-108
Identity = 191/212 (90.09%), Postives = 203/212 (95.75%), Query Frame = 2
Query:    2 VPTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSKSKAGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            VPTG+ FFGNLMDAGKLS+CGEESFGTGSDHIREKDGIWAVLAWLSI+A+RNKDKK GEKL+SV+DVVK HWATYGRNFFSRYDYEECESEGAN MI YLRDL+SKSKAGDKYG+Y L FADDFAYTDPVDGSVASKQGVRFVF+DGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKH+MDAQ ALKPLIDLALSVSKL+DFTGREKP +IT
Sbjct:  421 VPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSILAYRNKDKKSGEKLVSVADVVKDHWATYGRNFFSRYDYEECESEGANNMIEYLRDLISKSKAGDKYGSYSLDFADDFAYTDPVDGSVASKQGVRFVFSDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHDMDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 632          
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGMP_BRANA (Phosphoglucomutase, chloroplastic OS=Brassica napus GN=PGMP PE=2 SV=1)

HSP 1 Score: 385.185 bits (988), Expect = 3.748e-106
Identity = 185/212 (87.26%), Postives = 202/212 (95.28%), Query Frame = 2
Query:    2 VPTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSKSKAGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            VPTG+ FFGNLMDAGKLS+CGEESFGTGSDHIREKDGIWAVLAWLSI+AHR KDKKPGEKL+SV+DVV  +WATYGRNFFSRYDYEECESEGANKMI YLRD+V+KSKAG+ YGNYVLQFADDF+Y DPVDGSVASKQGVRFVFTDGSRII+RLSG GSAGATVRIYIEQFEPDVSKH++DAQ A+KPLIDLALSVSKL++FTGREKP +IT
Sbjct:  418 VPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSILAHRIKDKKPGEKLVSVADVVNEYWATYGRNFFSRYDYEECESEGANKMIEYLRDIVAKSKAGENYGNYVLQFADDFSYKDPVDGSVASKQGVRFVFTDGSRIIYRLSGNGSAGATVRIYIEQFEPDVSKHDVDAQIAIKPLIDLALSVSKLKEFTGREKPTVIT 629          
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGMC_MESCR (Phosphoglucomutase, cytoplasmic OS=Mesembryanthemum crystallinum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 1.217e-72
Identity = 131/218 (60.09%), Postives = 170/218 (77.98%), Query Frame = 2
Query:    2 VPTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDL------VSKSKAGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            VPTG+ FFGNLMDAG  S+CGEESFGTGSDH+REKDGIWAVLAWLSI+AH+NKD   GEKL++V D+V  HWATYGR++++RYDYE  ++ GA +++ YL +L      V+    G   G   +  AD+F Y DPVDGSV+  QG+R++F DGSR+IFRLSGTGS GAT+R+YIEQ+E D SK   D+Q ALKPL+D+AL +SK+++F+GR +P +IT
Sbjct:  366 VPTGWKFFGNLMDAGVCSICGEESFGTGSDHVREKDGIWAVLAWLSILAHKNKDNLNGEKLVTVEDIVCQHWATYGRHYYTRYDYENVDAGGAKELMAYLVNLQSDLSKVNNIVKGVHSGVANVIAADEFEYKDPVDGSVSKHQGIRYMFEDGSRLIFRLSGTGSEGATIRLYIEQYEKDSSKTGRDSQEALKPLVDVALKLSKMQEFSGRSEPTVIT 583          
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGMC2_ARATH (Probable phosphoglucomutase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At1g70730 PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 1.259e-69
Identity = 128/219 (58.45%), Postives = 166/219 (75.80%), Query Frame = 2
Query:    2 VPTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGE-KLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSKSKAGDKYGNYV------LQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            VPTG+ FFGNLMDAG  SVCGEESFGTGSDHIREKDGIWAVLAWLSI+AH+NK+   G  KL++V D+V+ HWATYGR++++RYDYE  ++  A +++G L  L S     +K    +      +  AD+F Y DPVDGSV+  QG+R++F DGSR++FRLSGTGS GAT+R+YIEQ+E D SK   D+Q AL PL+D+AL +SK+++FTGR  P +IT
Sbjct:  367 VPTGWKFFGNLMDAGMCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKETLDGNAKLVTVEDIVRQHWATYGRHYYTRYDYENVDATAAKELMGLLVKLQSSLPEVNKIIKGIHPEVANVASADEFEYKDPVDGSVSKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDASKIGRDSQDALGPLVDVALKLSKMQEFTGRSSPTVIT 585          
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGMC2_MAIZE (Phosphoglucomutase, cytoplasmic 2 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 2.148e-69
Identity = 124/218 (56.88%), Postives = 165/218 (75.69%), Query Frame = 2
Query:    2 VPTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSKSKAGDKYGNYV------LQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            VPTG+ FFGNLMDAG  S+CGEESFGTGSDHIREKDGIWAVLAWLSI+A +NKD   G+KL++V D+V+ HWATYGR++++RYDYE  ++  A +++  L  + S     +K    +      +  AD+F Y DPVDGSV+  QG+R++F DGSR++FRLSGTGS GAT+R+YIEQ+E D SK   D+Q AL PL+D+AL +SK++++TGR  P +IT
Sbjct:  366 VPTGWKFFGNLMDAGMCSICGEESFGTGSDHIREKDGIWAVLAWLSIIAFKNKDNLGGDKLVTVEDIVRQHWATYGRHYYTRYDYENVDAGAAKELMANLVSMQSSLSDVNKLIKEIRSDVSEVVAADEFEYKDPVDGSVSKHQGIRYLFGDGSRLVFRLSGTGSVGATIRVYIEQYEKDSSKTGRDSQEALAPLVDVALKLSKMQEYTGRSAPTVIT 583          
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGMC1_MAIZE (Phosphoglucomutase, cytoplasmic 1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 2.148e-69
Identity = 124/218 (56.88%), Postives = 165/218 (75.69%), Query Frame = 2
Query:    2 VPTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSKSKAGDKYGNYV------LQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            VPTG+ FFGNLMDAG  S+CGEESFGTGSDHIREKDGIWAVLAWLSI+A +NKD   G+KL++V D+V+ HWATYGR++++RYDYE  ++  A +++  L  + S     +K    +      +  AD+F Y DPVDGSV+  QG+R++F DGSR++FRLSGTGS GAT+R+YIEQ+E D SK   D+Q AL PL+D+AL +SK++++TGR  P +IT
Sbjct:  366 VPTGWKFFGNLMDAGMCSICGEESFGTGSDHIREKDGIWAVLAWLSIIAFKNKDNLGGDKLVTVEDIVRQHWATYGRHYYTRYDYENVDAGAAKELMANLVSMQSSLSDVNKLVKEIRSDVSEVVAADEFEYKDPVDGSVSKHQGIRYLFGDGSRLVFRLSGTGSVGATIRVYIEQYERDSSKTGRDSQDALAPLVDVALKLSKMQEYTGRSAPTVIT 583          
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGMC1_ARATH (Probable phosphoglucomutase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g23190 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 8.162e-69
Identity = 127/219 (57.99%), Postives = 165/219 (75.34%), Query Frame = 2
Query:    2 VPTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGE-KLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDL------VSKSKAGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            VPTG+ FFGNLMDAG  SVCGEESFGTGSDHIREKDGIWAVLAW+SI+AH+NK    G  KL+SV D+V+ HWATYGR++++RYDYE  ++  A +++ +L  L      V+K   G +     +  AD+F Y DPVDGS++  QG+R++F DGSR++FRLSGTGS GAT+R+YIEQ+E D SK   ++Q AL PL+DLAL +SK+ +FTGR  P +IT
Sbjct:  364 VPTGWKFFGNLMDAGMCSVCGEESFGTGSDHIREKDGIWAVLAWMSILAHKNKGNIDGNAKLVSVEDIVRQHWATYGRHYYTRYDYENVDAGKAKELMEHLVKLQSSIPEVNKIVKGIRSDVASVASADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDASKTGRESQEALSPLVDLALKLSKMEEFTGRSAPTVIT 582          
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGMC_BROIN (Phosphoglucomutase, cytoplasmic OS=Bromus inermis GN=PGM1 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 1.179e-67
Identity = 123/218 (56.42%), Postives = 163/218 (74.77%), Query Frame = 2
Query:    2 VPTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSKSKAGDKYGNYV------LQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            VPTG+ FFGNLMDAG  SVCGEESFGTGSDHIREKDGIWAVLAWLSI+A++NKD   G+KL++V ++V  HW  YGR++++RYDYE  ++E A +++  L  + S     +K    +      +  AD+F YTDPVDGSV+  QG+R++F DGSR++FRLSGTGS GAT+RIYIEQ+E D SK   ++  AL PL+D+AL +SK+++ TGR  P +IT
Sbjct:  364 VPTGWKFFGNLMDAGMCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAYKNKDNLGGDKLVTVENIVLQHWGIYGRHYYTRYDYENVDAEAAKELMANLVKMQSSLSDVNKLIKEIQPNVADVVSADEFEYTDPVDGSVSKHQGIRYLFGDGSRLVFRLSGTGSVGATIRIYIEQYEKDSSKTGRESSDALSPLVDVALKLSKIQELTGRSAPTVIT 581          
The following BLAST results are available for this feature:
BLAST of DY259909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PGMP_ARATH8.068e-10989.62Phosphoglucomutase, chloroplastic OS=Arabidopsis t... [more]
PGMP_PEA1.054e-10889.15Phosphoglucomutase, chloroplastic OS=Pisum sativum... [more]
PGMP_SOLTU1.797e-10890.09Phosphoglucomutase, chloroplastic OS=Solanum tuber... [more]
PGMP_BRANA3.748e-10687.26Phosphoglucomutase, chloroplastic OS=Brassica napu... [more]
PGMC_MESCR1.217e-7260.09Phosphoglucomutase, cytoplasmic OS=Mesembryanthemu... [more]
PGMC2_ARATH1.259e-6958.45Probable phosphoglucomutase, cytoplasmic 2 OS=Arab... [more]
PGMC2_MAIZE2.148e-6956.88Phosphoglucomutase, cytoplasmic 2 OS=Zea mays PE=2... [more]
PGMC1_MAIZE2.148e-6956.88Phosphoglucomutase, cytoplasmic 1 OS=Zea mays PE=2... [more]
PGMC1_ARATH8.162e-6957.99Probable phosphoglucomutase, cytoplasmic 1 OS=Arab... [more]
PGMC_BROIN1.179e-6756.42Phosphoglucomutase, cytoplasmic OS=Bromus inermis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YJ12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259909 ID=DY259909; Name=DY259909; organism=Citrus clementina; type=EST; length=1108bp
GGTTCCCACTGGGTTTTAATTTTTTGGTAATCTTATGGATGCTGGGAAGT
TGTCAGTATGTGGGGAAGAAAGTTTTGGTACTGGTTCTGATCACATTCGA
GAGAAAGATGGCATATGGGCTGTGCTGGCTTGGCTTTCAATTGTTGCGCA
CCGAAACAAAGACAAGAAACCAGGGGAAAAGTTGATATCTGTCTCTGATG
TTGTAAAAGCACATTGGGCAACATATGGCAGAAACTTCTTTTCGAGATAC
GACTATGAAGAATGTGAATCTGAAGGAGCAAATAAAATGATAGGATATCT
TAGAGATTTGGTATCTAAGAGCAAAGCAGGCGATAAGTATGGAAATTATG
TTCTTCAATTTGCAGATGACTTTGCATACACTGATCCAGTTGACGGAAGT
GTGGCATCAAAGCAAGGTGTTCGGTTTGTTTTCACAGACGGATCAAGGAT
AATATTTCGTTTATCAGGAACTGGTTCAGCAGGTGCAACTGTTCGAATTT
ACATTGAACAGTTTGAGCCAGATGTCTCTAAACATGAAATGGATGCACAA
TCAGCCTTGAAACCGTTAATAGATCTGGCATTATCTGTTTCCAAATTGAG
GGACTTCACTGGAAGGGAGAAACCCTACATTATCACATAAAGAGCTCTCC
CGTTTATAGTCCCTTTGTATCCAGGGTTATTTTAAGTTGGAGCCTGAGAA
AGGGGCAAACCCACCTTTCATGCTGGAGTTGATTTACCATTACATTTTCC
CGTGCACGGTTCGGATAGAAATTTGCGCTCCTGCGGCACCTCCAATCATT
CCCTGCAATTGACTATCGAATAACCTAGGGCCGAAATTAAACATCCTACT
TCACTAACCTCATACTCTGAATGGCGAACCCACATTTCTATCGCGCCCCT
GGCCATTATACCAACGGATACACCGTGGATTTTCACTCTTTTTCCAAACT
CCTCACTGCCCCCGTGCCGCCCTCCACCCCCCCTCCTTCCTCCTTCATAC
ACCCCCCCTACCCTCACATCCCACACCCCATTCATCTCAACACATGACTT
ACGACTCACTTAGTTTTTCATCCCCAGTTTCTCTCCCGTGCACCTCTCCT
AGCTCTCT
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