DY259914

Overview
NameDY259914
Unique NameDY259914
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1062
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY259914_ssr77 microsatellite DY259914_ssr77:77..88. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1352 contig Ccv1_Contig1352:1..1063. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY259914 vs. ExPASy Swiss-Prot
Match: PR1A1_ARATH (PRA1 family protein A1 OS=Arabidopsis thaliana GN=PRA1A1 PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 1.303e-84
Identity = 153/206 (74.27%), Postives = 167/206 (81.07%), Query Frame = 1 
Query:  109 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSRLKCNLYYYRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFKEEFRAVWGIY 726
            MDWGNVT +DL DALREVDWSSPPRP SEFFSRFTVP+S  KW+SRLKCNLYYYRTNYFIMI VILGLG L RP+             FLNDSFAG+F+EK TRTVR+FSP LAAKMRPPLTPV RGRPS+KRAI++CG+PRWVFVL  S VSF LWY+S GLL V  AL +  LATILHAS RTPNLKAR NTF+EEFRAVW  Y
Sbjct:    1 MDWGNVTVDDLFDALREVDWSSPPRPPSEFFSRFTVPKSVPKWDSRLKCNLYYYRTNYFIMIVVILGLGVLTRPLAIFAALLTALSLAFLNDSFAGSFSEKATRTVRRFSPQLAAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSFALWYISSGLLRVSVALLIAHLATILHASLRTPNLKARFNTFREEFRAVWRNY 206
[Close]
BLAST of DY259914 vs. ExPASy Swiss-Prot
Match: PR1A2_ARATH (PRA1 family protein A2 OS=Arabidopsis thaliana GN=PRA1A2 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 3.217e-75
Identity = 129/206 (62.62%), Postives = 155/206 (75.24%), Query Frame = 1 
Query:  109 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSRLKCNLYYYRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFKEEFRAVWGIY 726
            MDW NV AED+I+ALREV+WS+PPR   EFFSRF  PRS +KW SRLKCNLYYYRTNYFI++  +LGL  + RP+             FLNDSFA +FNEK  RT+R FSPH+AAKMRPP  PVIRGR +A++ +Y+CG+PRWVFV+ F   S ++W+ SCGLL VL+AL   L   I+HAS RTPNLKARLNTF+EEFRAVW  Y
Sbjct:    1 MDWDNVAAEDVIEALREVEWSTPPRSFGEFFSRFAFPRSFSKWKSRLKCNLYYYRTNYFILVIFVLGLALVTRPLALVGAALTALSIAFLNDSFAASFNEKFIRTIRHFSPHMAAKMRPPHMPVIRGRSTARKTVYVCGKPRWVFVITFLTASLVMWFSSCGLLWVLYALLTSLAVIIVHASIRTPNLKARLNTFREEFRAVWRNY 206
[Close]
BLAST of DY259914 vs. ExPASy Swiss-Prot
Match: PR1A3_ARATH (PRA1 family protein A3 OS=Arabidopsis thaliana GN=PRA1A3 PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 2.723e-74
Identity = 132/206 (64.08%), Postives = 156/206 (75.73%), Query Frame = 1 
Query:  109 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSRLKCNLYYYRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFKEEFRAVWGIY 726
            MDW +V AED+I+ALREV+WS+ PR L+EFFSRF  PRS +KW SRLKCNLYYYRTNYFI+   +LGL  + RP+             FLNDSFA TFNEK+ RT+R FSPHLAAKMRPP  PVIRGR + ++ +YICG+PR VFVL+    SF+LW+ SCGLL VL+AL   LL  +LHAS RTPNLKARLNTF+EEFRAVW  Y
Sbjct:    1 MDWDSVAAEDVIEALREVEWSASPRSLAEFFSRFAFPRSFSKWMSRLKCNLYYYRTNYFILFVFVLGLALITRPLAILGAALTALSLAFLNDSFAATFNEKMIRTIRHFSPHLAAKMRPPHMPVIRGRSATRKTVYICGQPRLVFVLLGLTASFVLWFTSCGLLWVLYALTTALLMILLHASLRTPNLKARLNTFREEFRAVWRNY 206
The following BLAST results are available for this feature:
BLAST of DY259914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PR1A1_ARATH1.303e-8474.27PRA1 family protein A1 OS=Arabidopsis thaliana GN=... [more]
PR1A2_ARATH3.217e-7562.62PRA1 family protein A2 OS=Arabidopsis thaliana GN=... [more]
PR1A3_ARATH2.723e-7464.08PRA1 family protein A3 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YJ18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259914 ID=DY259914; Name=DY259914; organism=Citrus clementina; type=EST; length=1062bp
CTGCCTAGGGTTTCTTGGATCATTTTATTTTGCACAAAATAAATCGTTTT
CTAGGGTTTCGGAAGAGCGGAATATTATAATAATAATAACAATAGTAGTA
ATCAAGCGATGGATTGGGGAAACGTAACAGCAGAAGATCTTATCGACGCG
CTTCGTGAAGTTGACTGGTCGTCTCCACCGCGTCCTCTCTCCGAGTTCTT
CTCCAGGTTCACCGTTCCGAGATCCTCCGCCAAATGGAACAGCCGATTGA
AATGCAATCTTTACTACTACCGAACAAACTACTTTATCATGATTACTGTC
ATTCTTGGGTTGGGTTTCCTAAGGAGACCTGTTGCTATTATTGCTGCTCT
TTTGACAGCCCTTAGTATTGCATTTCTCAATGACAGCTTTGCAGGTACTT
TCAATGAGAAGGTGACAAGAACTGTGAGGCAATTTTCTCCACATCTAGCT
GCAAAGATGAGGCCTCCTCTTACACCTGTTATTCGTGGGCGCCCATCAGC
GAAAAGAGCAATCTATATATGTGGTCGGCCTCGTTGGGTGTTTGTCTTAA
TATTTTCTTGCGTAAGTTTCATCCTTTGGTATGTTTCCTGTGGTCTTTTG
ACTGTTCTATGGGCACTTGCTGTTGGACTTCTTGCCACTATCCTTCATGC
AAGTTTTCGAACTCCCAACTTGAAAGCACGTCTGAATACATTCAAAGAGG
AATTCCGTGCTGTTTGGGGCATTTATAAGTGAGCTGTAGCTGATACCCCT
CCGTAGGAAAAGCCGCCCTTTTTCGTTGCCAGGTTCATACAACCCGGTTG
TTCTGGATTGGCCTTAATTGGCTCCTCCCGTTTGCTAAAAAAAAAATGGC
ATGGCCTGGAACAAAAATTCCCCGGGGGAAAGTTGCCTAATTTTCGCCCC
CTAAAGGCGGGAATTTGCTAAGGCCCTGTGTTTCTTCCACAAAAATTTTT
TCCCTCGGATCACTACGATTTGATCTCAAGTCCCGACAGGGACCAAATGT
GAAAAAAAATTTTATTATCGCGCAGAATATCTTACGTCTTTCCTCGGCCA
AACATCCTTAAC
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