DY259920

Overview
NameDY259920
Unique NameDY259920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1009
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1355 contig Ccv1_Contig1355:1..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259920 vs. ExPASy Swiss-Prot
Match: PT3K1_SOLTU (Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 6.484e-46
Identity = 109/251 (43.43%), Postives = 149/251 (59.36%), Query Frame = 3
Query:  108 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICINTSAAPTYFPPHYLETKDSDSGRTPTFDLVEGGVAANNPTLLAISHISKEMVNQTPISGTKTHGREKYAGTILGPGT 857
            G+ +TVLS              L FLE +LQE+D  + AR+ADYFDV+ GT TGGL+T M+T PN+   PF+AAKDI  FY +HGPKIF     S F           L+ PKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  +    +A++ DIC +T+AAPTYFPPHY  T  S +G    F+LV+G VAA +P+LL+IS  ++        +  K+   ++     LG GT
Sbjct:   14 GEMVTVLSIDGGGIKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGTGTGGLLTAMITTPNENNRPFAAAKDIIPFYFDHGPKIFEP---SGFH----------LVEPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKTPELDAKMYDICYSTAAAPTYFPPHYFATNTS-NGDQYDFNLVDGDVAAVDPSLLSISVATRLAQEDPAFASIKSLNYKQMLLLSLGTGT 250          
BLAST of DY259920 vs. ExPASy Swiss-Prot
Match: PATT5_SOLTU (Patatin-T5 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 6.484e-46
Identity = 112/252 (44.44%), Postives = 151/252 (59.92%), Query Frame = 3
Query:  108 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICINTSAAPTYFPPHYLETKDSDSGRTPTFDLVEGGVA-ANNPTLLAISHISKEMVNQTPISGTKTHGREKYAGTILGPGT 857
            G+ +TVLS              L FLE +LQE+D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGPKIF Q S S F             GPKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC +T+AAPT+FPPHY  T  S +G    F+LV+G VA  ++P LL+IS  +K        +  K+   ++     LG GT
Sbjct:   26 GEMVTVLSIDGGGIKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGTSTGGLLTAMITTPNETNRPFAAAKDIVPFYFEHGPKIF-QSSGSIF-------------GPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTFFPPHYFATNTS-NGDKYEFNLVDGAVATVDDPALLSISVATKLAQVDPKFASIKSLNYKQMLLLSLGTGT 262          
BLAST of DY259920 vs. ExPASy Swiss-Prot
Match: PT2K4_SOLTU (Patatin-2-Kuras 4 OS=Solanum tuberosum GN=pat2-k4 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.106e-45
Identity = 111/252 (44.05%), Postives = 149/252 (59.13%), Query Frame = 3
Query:  108 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICINTSAAPTYFPPHYLETKDSDSGRTPTFDLVEGGVA-ANNPTLLAISHISKEMVNQTPISGTKTHGREKYAGTILGPGT 857
            G+ +TVLS              L FLE +LQE+D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGP IF      N+  SI        LGP YDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  E+   +A++ DIC +T+AAP YFPPHY  T  S+  R   F+LV+GGVA   +P LL++S  +K        +  K+   ++     LG GT
Sbjct:   14 GEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------NYSGSI--------LGPMYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAESPQLDAKMYDICYSTAAAPIYFPPHYFVTHTSNGDRY-EFNLVDGGVATVGDPALLSLSVATKLAQVDPKFASIKSLDYKQMLLLSLGTGT 250          
BLAST of DY259920 vs. ExPASy Swiss-Prot
Match: PAT0_SOLTU (Patatin OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.464e-45
Identity = 109/252 (43.25%), Postives = 149/252 (59.13%), Query Frame = 3
Query:  108 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDG-PSARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICINTSAAPTYFPPHYLETKDSDSGRTPTFDLVEGGVA-ANNPTLLAISHISKEMVNQTPISGTKTHGREKYAGTILGPGT 857
            G+ +TVLS              L FLE +LQE+D    AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGP IF      N+  SI         GP+YDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  E+   +A++ DIC +T+AAP YFPPH+  T  S +G T  F+LV+G VA   +P LL++S  ++   +    S  K+   ++     LG GT
Sbjct:   26 GEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------NYSGSI--------FGPRYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAESPQLDAKMYDICYSTAAAPIYFPPHHFVTHTS-NGATYEFNLVDGAVATVGDPALLSLSVATRLAQDDPAFSSIKSLDYKQMLLLSLGTGT 262          
BLAST of DY259920 vs. ExPASy Swiss-Prot
Match: PAT07_SOLTU (Patatin-07 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 7.169e-45
Identity = 110/263 (41.83%), Postives = 152/263 (57.79%), Query Frame = 3
Query:   84 MATAGSAEGK---KITVLSXXXXXXXXXXXXXXLAFLESKLQELDG-PSARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICINTSAAPTYFPPHYLETKDSDSGRTPTFDLVEGGVA-ANNPTLLAISHISKEMVNQTPISGTKTHGREKYAGTILGPGT 857
            +AT  S   K    +TVLS              L FLE +LQE+D    AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGP IF      N+  SI         GP+YDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A+++DIC +T+AAPTYFPPHY  T  S +G    F+LV+G VA   +P LL++S  ++        +  ++   ++     LG GT
Sbjct:   15 LATTSSTCAKLEEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------NYSGSI--------FGPRYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMSDICYSTAAAPTYFPPHYFATNTS-NGDKYEFNLVDGAVATVADPALLSVSVATRRAEEDPAFASIRSLNYKQLLLLSLGTGT 262          
BLAST of DY259920 vs. ExPASy Swiss-Prot
Match: PATM3_SOLTU (Patatin group M-3 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 9.363e-45
Identity = 113/263 (42.97%), Postives = 152/263 (57.79%), Query Frame = 3
Query:   84 MATAGSAEGK---KITVLSXXXXXXXXXXXXXXLAFLESKLQELDG-PSARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICINTSAAPTYFPPHYLETKDSDSGRTPTFDLVEGGVA-ANNPTLLAISHISKEMVNQTPISGTKTHGREKYAGTILGPGT 857
            +AT  S   K    +TVLS              L FLE +LQE+D    AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FYLEHGP IF      N+  SI        +GP YDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC +T+AAP YFPPHY  T  S +G    F+LV+GGVA   +P LL++S  ++        S  K+   ++     LG GT
Sbjct:   15 LATTSSTCAKLEEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYLEHGPHIF------NYSGSI--------IGPMYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHYFITHTS-NGDIYEFNLVDGGVATVGDPALLSLSVATRLAQEDPAFSSIKSLDYKQMLLLSLGTGT 262          
BLAST of DY259920 vs. ExPASy Swiss-Prot
Match: PAT15_SOLTU (Patatin-15 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 9.363e-45
Identity = 112/263 (42.59%), Postives = 152/263 (57.79%), Query Frame = 3
Query:   84 MATAGSAEGK---KITVLSXXXXXXXXXXXXXXLAFLESKLQELDG-PSARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICINTSAAPTYFPPHYLETKDSDSGRTPTFDLVEGGVA-ANNPTLLAISHISKEMVNQTPISGTKTHGREKYAGTILGPGT 857
            +AT  S   K    +TVLS              L FLE +LQE+D    AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGP IF      N+  SI         GP+YDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC +T+AAP YFPPH+  T  S +G T  F+LV+GGVA   +P LL++S  ++        S  K+   ++     LG GT
Sbjct:   15 LATTSSTCAKLEEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------NYSGSI--------FGPRYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHHFVTHTS-NGATYEFNLVDGGVATVGDPALLSLSVATRLAQEDPAFSSIKSLDYKQMLLLSLGTGT 262          
BLAST of DY259920 vs. ExPASy Swiss-Prot
Match: PAT06_SOLTU (Patatin-06 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 9.363e-45
Identity = 112/263 (42.59%), Postives = 152/263 (57.79%), Query Frame = 3
Query:   84 MATAGSAEGK---KITVLSXXXXXXXXXXXXXXLAFLESKLQELDG-PSARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICINTSAAPTYFPPHYLETKDSDSGRTPTFDLVEGGVA-ANNPTLLAISHISKEMVNQTPISGTKTHGREKYAGTILGPGT 857
            +AT  S   K    +TVLS              L FLE +LQE+D    AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGP IF      N+  SI         GP+YDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC +T+AAP YFPPH+  T  S +G T  F+LV+GGVA   +P LL++S  ++        S  K+   ++     LG GT
Sbjct:   15 LATTSSTCAKLEEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------NYSGSI--------FGPRYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHHFVTHTS-NGATYEFNLVDGGVATVGDPALLSLSVATRLAQEDPAFSSIKSLDYKQMLLLSLGTGT 262          
BLAST of DY259920 vs. ExPASy Swiss-Prot
Match: PAT05_SOLTU (Patatin-05 OS=Solanum tuberosum GN=pat1-k1 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 9.363e-45
Identity = 104/252 (41.27%), Postives = 148/252 (58.73%), Query Frame = 3
Query:  108 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICINTSAAPTYFPPHYLETKDSDSGRTPTFDLVEGGVA-ANNPTLLAISHISKEMVNQTPISGTKTHGREKYAGTILGPGT 857
            G+ +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY +HGP IF   +   F             GPKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A+++DIC +T+AAPTYFPPHY  T  S +G    F+LV+G VA   +P LL++S  ++        +  ++   ++     LG GT
Sbjct:   26 GEMVTVLSIDGGGIKGIIPGIILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFQHGPHIFNSSTGQFF-------------GPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMSDICYSTAAAPTYFPPHYFATNTS-NGDKYEFNLVDGAVATVADPALLSVSVATRRAEEDPAFASIRSLNYKQLLLLSLGTGT 263          
BLAST of DY259920 vs. ExPASy Swiss-Prot
Match: PAT04_SOLTU (Patatin-04/09 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 9.363e-45
Identity = 112/263 (42.59%), Postives = 152/263 (57.79%), Query Frame = 3
Query:   84 MATAGSAEGK---KITVLSXXXXXXXXXXXXXXLAFLESKLQELDG-PSARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICINTSAAPTYFPPHYLETKDSDSGRTPTFDLVEGGVA-ANNPTLLAISHISKEMVNQTPISGTKTHGREKYAGTILGPGT 857
            +AT  S   K    +TVLS              L FLE +LQE+D    AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGP IF      N+  SI         GP+YDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC +T+AAP YFPPH+  T  S +G T  F+LV+GGVA   +P LL++S  ++        S  K+   ++     LG GT
Sbjct:   15 LATTSSTCAKLEEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------NYSGSI--------FGPRYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHHFVTHTS-NGATYEFNLVDGGVATVGDPALLSLSVATRLAQEDPAFSSIKSLDYKQMLLLSLGTGT 262          
The following BLAST results are available for this feature:
BLAST of DY259920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PT3K1_SOLTU6.484e-4643.43Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 ... [more]
PATT5_SOLTU6.484e-4644.44Patatin-T5 OS=Solanum tuberosum PE=1 SV=1[more]
PT2K4_SOLTU1.106e-4544.05Patatin-2-Kuras 4 OS=Solanum tuberosum GN=pat2-k4 ... [more]
PAT0_SOLTU2.464e-4543.25Patatin OS=Solanum tuberosum PE=3 SV=1[more]
PAT07_SOLTU7.169e-4541.83Patatin-07 OS=Solanum tuberosum PE=2 SV=1[more]
PATM3_SOLTU9.363e-4542.97Patatin group M-3 OS=Solanum tuberosum PE=2 SV=1[more]
PAT15_SOLTU9.363e-4542.59Patatin-15 OS=Solanum tuberosum PE=2 SV=1[more]
PAT06_SOLTU9.363e-4542.59Patatin-06 OS=Solanum tuberosum PE=2 SV=1[more]
PAT05_SOLTU9.363e-4541.27Patatin-05 OS=Solanum tuberosum GN=pat1-k1 PE=1 SV... [more]
PAT04_SOLTU9.363e-4542.59Patatin-04/09 OS=Solanum tuberosum PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YK02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259920 ID=DY259920; Name=DY259920; organism=Citrus clementina; type=EST; length=1009bp
CAGCAATAATTTCTAATTTAAAAGCTGCTCGATCTGATCGTACTTCTATT
TAACTTCAAGAAGCTCTTTCAATTTGAAATAAAATGGCCACTGCCGGTTC
TGCAGAAGGAAAGAAAATAACAGTTCTGAGCATCGATGGAGGTGGCATTA
GGGGCATTATTCCGGGCACTATTTTAGCCTTTCTTGAATCCAAGCTCCAG
GAATTGGATGGACCAAGTGCAAGAATTGCAGATTATTTTGATGTAGTAGC
AGGAACAAGCACCGGCGGATTGGTAACCACCATGCTTACGGCACCCAACA
AGGAAGGCGGACCTTTCAGTGCTGCAAAGGATATCAATAATTTTTATCTT
GAGCACGGTCCTAAAATTTTCCCTCAAATTAGCCGCAGCAACTTCTTGGA
ATCGATAGCAAGCTCTATCGATAAACTGCTGCTTGGACCAAAGTATGATG
GGAAGTACCTGCGGACACTAGTAAACGAGCTACTAGGAGACGTTACTGTG
AAAGAGACTCTTACCAACGTGGTTATACCAACTTTTGACATCAAGCTTCT
TCAACCAGTCATCTTCTCAACCACCGATGGAAAAGAGAACGTTTTGAAGA
ATGCTCGGCTGGCTGATATATGCATAAACACTTCTGCAGCGCCCACTTAC
TTCCCACCTCACTACTTGGAGACTAAGGACAGTGACAGTGGCAGAACCCC
AACTTTTGATCTTGTTGAAGGTGGAGTTGCTGCTAATAATCCAACCCTAT
TGGCAATAAGCCACATATCGAAGGAAATGGTGAACCAAACCCCCATTTCA
GGAACAAAAACCCATGGACGGGAAAAATATGCCGGTACCATCCTAGGGCC
AGGAACGCCCAAAAAAAATTGAAATACCATGGCACCCAACCCCCCCCAGG
GGGGGCTTTCTCCAAAGGATCTAAAGAAAAAAACCAAAACCCCCAAAACC
CAACACCCTCTCTCAAAGAAACCCCCAAAATTGATTAATTCCCCGGTGTC
CCCCCCCCC
back to top