DY259921

Overview
NameDY259921
Unique NameDY259921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length958
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY259921_ssr225 microsatellite DY259921_ssr225:225..234. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY259921 vs. ExPASy Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 5.098e-37
Identity = 80/129 (62.02%), Postives = 92/129 (71.32%), Query Frame = 1
Query:   70 AMATAGATAKRKPVFIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGAXXXXXXXXXXXXXXIAECLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPADFEVKE 456
            A+AT  +T KRKPVF+KV+QLKPGTTGHTLTVKV+ +  V V   R                I ECL+GD+TG I FTARNDQVD+M PG TVILRN++IDMFKG+MRL VDKWGRIE T  A F VKE
Sbjct:    8 AVATGTSTVKRKPVFVKVEQLKPGTTGHTLTVKVIEANIV-VPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKE 135          
The following BLAST results are available for this feature:
BLAST of DY259921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4844_ARATH5.098e-3762.02Uncharacterized protein At4g28440 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YK05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259921 ID=DY259921; Name=DY259921; organism=Citrus clementina; type=EST; length=958bp
TTAGTCGCTGCTTCGATTCTCATTCGCTCACAAATCCTATACCTAGACCT
AGTATTCGGGTTCTTTGTTGCGATGGCGACGGCGGGTGCGACGGCAAAGA
GGAAGCCGGTCTTTATTAAGGTCGATCAGCTCAAGCCAGGAACCACCGGC
CACACGCTGACCGTCAAGGTGGTGTCATCGAAGCCCGTGCAGGTCAACAA
GCCACGTGGCGCAAGGTCATTGTCCTCTCTCTCTCAGCCTTCTCGACCAC
CTCGCATCGCCGAGTGCCTCGTCGGCGACGACACCGGTGCCATCTACTTC
ACTGCCCGCAACGACCAAGTTGATATTATGACGCCGGGCACCACTGTGAT
TCTACGTAATGCTAAGATTGATATGTTCAAGGGCTCAATGAGGCTAGCAG
TCGACAAATGGGGACGCATTGAAGTCACCGAACCTGCTGACTTTGAAGTT
AAAGAGAGTAACAATCTTTCTTTAGTTGAGTATGAGTTAGTTAATGTGGA
GTGATTGGTATCATTTGGAGGTGAATATTTGTAGGTTAGTATTTCTGGAG
GTTCGATTCTTCTTGTTCCCCGTCAAAACTGTTAACTGGGATCCAGTTTT
TATGGATGGTGGTACAAAGATCTTGCTTATATGGTTTTTTCCAGCTTTGA
TATCCATGTGATGAAAGACCCCAAGTAATTAAGTTTCTGATTGAGTTTGA
AATGGAATCATTTAATGTTATATTTTAAATTACCGCTGGGGTATTGAAGG
TGGACCAATTCCTTGGCTAAAAAAAAAAAAAAAAAAAAAACCCAATTTCT
TTGTACAAAGTTGGCCATATTAAAAAAGCCTTTCTTTTACAATTTTTTTG
GATCCCCCCAGGGTCCTTATCACTTCAAACAACAACTACTGATTTTGCCC
TCCCAGCCTTAAATCCCCCTTTATCGGTGGTCGAATTCCTATGGTACAAA
AGCTTCTC
back to top