DY259926

Overview
NameDY259926
Unique NameDY259926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1067
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY259926_ssr691 microsatellite DY259926_ssr691:691..702. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1359 contig Ccv1_Contig1359:1..1068. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259926 vs. ExPASy Swiss-Prot
Match: WOX13_ARATH (WUSCHEL-related homeobox 13 OS=Arabidopsis thaliana GN=WOX13 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 2.401e-62
Identity = 138/251 (54.98%), Postives = 167/251 (66.53%), Query Frame = 2
Query:  116 MTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLGNIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSSSANTLHNXXXXXXXXXDSEVETEVDSLLLHDEHKTTKPENLSSAHSTSQPQHLRNLXXXXXXXXXXXXXMCFHTPADISSSSLHFLGVFSNNPRDDHLTGKKGGMPGNLYLYDHAKNNSRAG 868
            MTDEQ ETLRKQIA+Y TICE+LVEMHK+L+A QDLA  GGR+G +Y DP+M+S G HK++ARQRWTPTPVQLQILE IFDQGTGTPSKQKIK+IT ELSQHGQI+E NVYNWFQNRRARSKRKQ         H          +SEVETEV++L   +E +  +PE+L      +   +                 +CF +P    SS LH L V S NPRD+HL GK  G+  +  LYDH ++   +G
Sbjct:   38 MTDEQYETLRKQIAIYGTICERLVEMHKTLTAQQDLA--GGRMGGLYADPMMSSLG-HKMTARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIAEQNVYNWFQNRRARSKRKQ---------HGGGSSGNNNGESEVETEVEAL---NEKRVVRPESLLGLPDGNSNNNGLG-TTTATTTAPRPEDLCFQSPE--ISSDLHLLDVLS-NPRDEHLVGKM-GLAESYNLYDHVEDYGMSG 268          
BLAST of DY259926 vs. ExPASy Swiss-Prot
Match: WOX8_ORYSJ (WUSCHEL-related homeobox 8 OS=Oryza sativa subsp. japonica GN=WOX8 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 1.276e-55
Identity = 126/236 (53.39%), Postives = 152/236 (64.41%), Query Frame = 2
Query:  116 MTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLGNIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSSSANTLHNXXXXXXXXXDSEVETEVDSLLLHDEHKTTKPENLSSAHSTSQPQHLRNLXXXXXXXXXXXXXMCFHTPADISSSSLHFLGVFS------NNPRDDHLTGK 805
            MTDEQ+E LRKQI++YATICEQLVEMH++L+A QD + AG RLGN+YCDPLM  GG HKI+ARQRWTPTP+QLQILE+IFDQG GTPSKQKIK+IT ELSQHGQISETNVYNWFQNRRARSKRKQ    + N             +SE E + +S     + K+ +P + + A      + +  +             M  +   D SS S   LG  S      +NPR DH  GK
Sbjct:   30 MTDEQMEVLRKQISIYATICEQLVEMHRALTAQQD-SIAGMRLGNLYCDPLMVPGG-HKITARQRWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQAALPNNNA------------ESEAEADEES-PTDKKPKSDRPLHQNIAMRDHNSERISEMHHFDTEHEQIRRMM--YASNDSSSRSSGSLGQMSFYDNVMSNPRIDHFLGK 248          
BLAST of DY259926 vs. ExPASy Swiss-Prot
Match: WOX14_ARATH (WUSCHEL-related homeobox 14 OS=Arabidopsis thaliana GN=WOX14 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.049e-41
Identity = 81/132 (61.36%), Postives = 105/132 (79.55%), Query Frame = 2
Query:  116 MTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLGNIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSSSAN 511
            MT+EQ+E LRKQIAVYA IC+QLV +H SLS++  L++    +   Y DP+  S   H+IS R RWTPT  QLQILESI+D+G+GTP++++I+EI  ELS+HGQI+ETNVYNWFQNRRARSKRKQ  +++AN
Sbjct:   31 MTEEQMEILRKQIAVYAVICDQLVLLHNSLSSYHPLSSGVRPMVGGYFDPMGASSSSHRISTRHRWTPTSTQLQILESIYDEGSGTPNRRRIREIATELSEHGQITETNVYNWFQNRRARSKRKQPQTTTAN 162          
BLAST of DY259926 vs. ExPASy Swiss-Prot
Match: WOX10_ARATH (Putative WUSCHEL-related homeobox 10 OS=Arabidopsis thaliana GN=WOX10 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.418e-38
Identity = 76/125 (60.80%), Postives = 98/125 (78.40%), Query Frame = 2
Query:  116 MTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLGNIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 490
            MTDEQ+ETLRKQIA+YA +C+QLV +H SLS+   L++    +   Y DP++ S   H +S R RWTPT  QLQILE+I+ +G+GTP+ ++IKEIT+ELS+HGQI E NVY+WFQNRRARSKRKQ
Sbjct:   15 MTDEQMETLRKQIAIYAVLCDQLVFLHNSLSSVPLLSSGMNPMRGEYFDPMVASSSAHGMSTRPRWTPTTTQLQILENIYKEGSGTPNPRRIKEITMELSEHGQIMEKNVYHWFQNRRARSKRKQ 139          
BLAST of DY259926 vs. ExPASy Swiss-Prot
Match: WOX7_ORYSJ (WUSCHEL-related homeobox 7 OS=Oryza sativa subsp. japonica GN=WOX7 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 5.997e-13
Identity = 35/96 (36.46%), Postives = 56/96 (58.33%), Query Frame = 2
Query:  200 SLSAHQDLAAAGGRLGNIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 487
            SL +     +AGG   ++   P  + G       + RW P P Q++ILE+IF+ G   P + +I  I ++L ++GQ+ + NV+ WFQNR++RSK K
Sbjct:   33 SLLSGSSAGSAGGGGYSLKSSPFSSVGEERVPDPKPRWNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMQLQEYGQVGDANVFYWFQNRKSRSKNK 128          
BLAST of DY259926 vs. ExPASy Swiss-Prot
Match: WOX5_ORYSJ (WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. japonica GN=WOX5 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.023e-12
Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = 2
Query:  233 GGRLGNI------YCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 490
            GGR G           PL  +       A  RWTPT  Q+ +LE ++ QG  TP+ ++I++IT  L +HG I   NV+ WFQN +AR ++KQ
Sbjct:   13 GGRAGGFSDPPSPLSPPLSPASAAAAALANARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQRQKQ 104          
BLAST of DY259926 vs. ExPASy Swiss-Prot
Match: WOX5_ORYSI (WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. indica GN=WOX5 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.023e-12
Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = 2
Query:  233 GGRLGNI------YCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 490
            GGR G           PL  +       A  RWTPT  Q+ +LE ++ QG  TP+ ++I++IT  L +HG I   NV+ WFQN +AR ++KQ
Sbjct:   13 GGRAGGFSDPPSPLSPPLSPASAAAAALANARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQRQKQ 104          
BLAST of DY259926 vs. ExPASy Swiss-Prot
Match: WOX8_ARATH (WUSCHEL-related homeobox 8 OS=Arabidopsis thaliana GN=WOX8 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.336e-12
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 2
Query:  302 RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 487
            + RW P P Q++ILESIF+ GT  P +++I+ I + L ++GQI + NV+ WFQNR++R+K K
Sbjct:   53 KPRWNPKPEQIRILESIFNSGTINPPREEIQRIRIRLQEYGQIGDANVFYWFQNRKSRAKHK 114          
BLAST of DY259926 vs. ExPASy Swiss-Prot
Match: WOX1_ARATH (WUSCHEL-related homeobox 1 OS=Arabidopsis thaliana GN=WOX1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.887e-12
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = 2
Query:  293 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 490
            +    RW PTP QL++LE ++ QGT TPS   I++IT +L ++G+I   NV+ WFQN +AR ++K+
Sbjct:   71 VMVSSRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKR 136          
BLAST of DY259926 vs. ExPASy Swiss-Prot
Match: WOX9_ARATH (WUSCHEL-related homeobox 9 OS=Arabidopsis thaliana GN=WOX9 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.631e-12
Identity = 28/62 (45.16%), Postives = 45/62 (72.58%), Query Frame = 2
Query:  302 RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 487
            + RW P P Q++ILE+IF+ G   P +++I+ I  +L ++GQ+ + NV+ WFQNR++RSK K
Sbjct:   53 KPRWNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 114          
The following BLAST results are available for this feature:
BLAST of DY259926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
WOX13_ARATH2.401e-6254.98WUSCHEL-related homeobox 13 OS=Arabidopsis thalian... [more]
WOX8_ORYSJ1.276e-5553.39WUSCHEL-related homeobox 8 OS=Oryza sativa subsp. ... [more]
WOX14_ARATH1.049e-4161.36WUSCHEL-related homeobox 14 OS=Arabidopsis thalian... [more]
WOX10_ARATH1.418e-3860.80Putative WUSCHEL-related homeobox 10 OS=Arabidopsi... [more]
WOX7_ORYSJ5.997e-1336.46WUSCHEL-related homeobox 7 OS=Oryza sativa subsp. ... [more]
WOX5_ORYSJ1.023e-1239.13WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. ... [more]
WOX5_ORYSI1.023e-1239.13WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. ... [more]
WOX8_ARATH1.336e-1248.39WUSCHEL-related homeobox 8 OS=Arabidopsis thaliana... [more]
WOX1_ARATH3.887e-1245.45WUSCHEL-related homeobox 1 OS=Arabidopsis thaliana... [more]
WOX9_ARATH6.631e-1245.16WUSCHEL-related homeobox 9 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YK16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259926 ID=DY259926; Name=DY259926; organism=Citrus clementina; type=EST; length=1067bp
TAATATTAGAGAATTAGCGCAGCAGGAGACCCAAACCCAGAACCAGAACC
AGAACCAGAGAGGAGGAGAGAATGATAATAATAACGTTGTAAATGGAGTA
ATGTATGTGAAAGTGATGACTGATGAGCAACTCGAGACTTTGAGGAAGCA
GATTGCTGTCTATGCTACTATTTGCGAGCAACTTGTTGAGATGCATAAAT
CACTCTCTGCCCACCAAGATCTTGCAGCAGCAGGAGGGCGGCTGGGGAAT
ATATACTGTGACCCATTAATGACATCTGGTGGTGGGCACAAGATCAGTGC
CAGACAGAGATGGACTCCAACTCCAGTTCAGCTTCAAATTCTGGAGAGCA
TTTTTGATCAAGGGACTGGGACTCCAAGCAAGCAAAAGATCAAAGAGATT
ACAGTTGAACTCAGTCAGCACGGCCAAATCTCCGAAACTAATGTCTACAA
TTGGTTCCAAAATAGGCGTGCTCGATCCAAAAGGAAGCAGTTAGTGTCTT
CTTCTGCCAACACTCTTCATAATGGTGGTGGTGCTGGTGCTGGTGGTGCT
GATTCAGAAGTAGAGACTGAGGTTGATTCTCTGCTGCTGCATGACGAACA
CAAGACCACTAAACCAGAGAATCTTTCTTCTGCTCATTCTACCTCTCAAC
CTCAACACTTACGCAACCTCCCTCCGACTCCAAGGCCTCGTGATGATGAT
GACGACCCTATGTGCTTTCACACCCCTGCCGACATTTCTTCCTCCTCATT
GCATTTCTTGGGTGTGTTTTCTAATAATCCGAGAGATGATCATTTAACAG
GAAAGAAGGGTGGAATGCCAGGGAACTTATATCTTTATGATCATGCAAAA
AACAACAGCAGGGCTGGGTTAACCTCATTCCGGTTCCATTAATCCCCCCA
AAAAACCCTTGTCCACCCCACAAACCGGGCCGGGAGGCTGGACCTTCTCC
TCCTTGTTTAATTCCCCCAAACCATATGGAGCGGGTGGGTTCTCAACCCA
AAAAAAAAGGGAATCCTTTCCCCGATAGGGGCTGGCCGGGCTTTGGCCTT
GATCCCATTTTGAAATG
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