DY259927

Overview
NameDY259927
Unique NameDY259927
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1063
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.837e-53
Identity = 103/121 (85.12%), Postives = 110/121 (90.91%), Query Frame = 3 
Query:   36 MATAAPKTESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            MAT  P TESVQCFGR  TAVAVT+CKRG GLIK+NGCPIEL +PEILRFK FEPILLLG+HRF GV+MRIRV GGGHTS +YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLL
Sbjct:    1 MATQ-PATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLL 120

HSP 2 Score: 25.409 bits (54), Expect = 1.837e-53
Identity = 12/24 (50.00%), Postives = 12/24 (50.00%), Query Frame = 1 
Query:  400 VADPRRCEPXXXXXXXXXXXXQKS 471
            VADPRRCEP            QKS
Sbjct:  121 VADPRRCEPKKFGGRGARSRYQKS 144
[Close]
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.838e-53
Identity = 101/118 (85.59%), Postives = 110/118 (93.22%), Query Frame = 3 
Query:   45 AAPKTESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            A P TESVQCFGR  TAVAVT+CKRGRGLIK+NG PIELV+PEILR+KAFEPILLLGRHRF GVDMRIRV+GGG TS IYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLL
Sbjct:    2 ATPATESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLL 119

HSP 2 Score: 25.409 bits (54), Expect = 1.838e-53
Identity = 12/24 (50.00%), Postives = 12/24 (50.00%), Query Frame = 1 
Query:  400 VADPRRCEPXXXXXXXXXXXXQKS 471
            VADPRRCEP            QKS
Sbjct:  120 VADPRRCEPKKFGGRGARSRFQKS 143
[Close]
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.394e-53
Identity = 102/121 (84.30%), Postives = 110/121 (90.91%), Query Frame = 3 
Query:   36 MATAAPKTESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            MAT  P TESVQCFGR  TAVAVT+CKRG GLIK+NGCPIEL +PEILRFK FEP+LLLG+HRF GV+MRIRV GGGHTS +YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLL
Sbjct:    1 MATQ-PATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLL 120

HSP 2 Score: 25.409 bits (54), Expect = 2.394e-53
Identity = 12/24 (50.00%), Postives = 12/24 (50.00%), Query Frame = 1 
Query:  400 VADPRRCEPXXXXXXXXXXXXQKS 471
            VADPRRCEP            QKS
Sbjct:  121 VADPRRCEPKKFGGRGARSRYQKS 144
[Close]
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 5.878e-53
Identity = 105/113 (92.92%), Postives = 106/113 (93.81%), Query Frame = 3 
Query:   60 ESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            ESVQCFGR  TAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF GVDMRIRVKGGGHTS IYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLL
Sbjct:    7 ESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLL 119
[Close]
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS162_ARATH (40S ribosomal protein S16-2 OS=Arabidopsis thaliana GN=RPS16B PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.562e-49
Identity = 97/121 (80.17%), Postives = 106/121 (87.60%), Query Frame = 3 
Query:   36 MATAAPKTESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            MAT  P  ESVQCFGR  TA AVTYCKRG G+IK+NG PIEL +PEILRFK FEP+LLLG+HRF GVDMRIR  GGG+TS +YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLL
Sbjct:    1 MATQ-PAKESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVDMRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLL 120

HSP 2 Score: 22.3274 bits (46), Expect = 2.562e-49
Identity = 11/24 (45.83%), Postives = 11/24 (45.83%), Query Frame = 1 
Query:  400 VADPRRCEPXXXXXXXXXXXXQKS 471
            VADPRRCE             QKS
Sbjct:  121 VADPRRCESKKFGGPGARARFQKS 144
[Close]
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.787e-48
Identity = 94/113 (83.19%), Postives = 105/113 (92.92%), Query Frame = 3 
Query:   60 ESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            ESVQCFGR  TAVAVTYC+RGRGLI++   PIELVEPEILR+KAFEP+LLLGR +F GVDMRIRVKGGG+TS IYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLL
Sbjct:    5 ESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFAGVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLL 116

HSP 2 Score: 25.409 bits (54), Expect = 2.787e-48
Identity = 12/24 (50.00%), Postives = 12/24 (50.00%), Query Frame = 1 
Query:  400 VADPRRCEPXXXXXXXXXXXXQKS 471
            VADPRRCEP            QKS
Sbjct:  117 VADPRRCEPKKFGGRGARSRFQKS 140
[Close]
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_ORYSJ (40S ribosomal protein S16 OS=Oryza sativa subsp. japonica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.513e-46
Identity = 89/120 (74.17%), Postives = 99/120 (82.50%), Query Frame = 3 
Query:   39 ATAAPKTESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            A   P   +VQCFGR  TAVAV+YCK GRGLIK+NG PIEL+ PE+LR KAFEPILL GR RF  +DMRIRV+GGG TS IYAIRQ+IAKALVA+YQKYVDE SKKE+KDI  RYDRTLL
Sbjct:    4 ALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLL 123

HSP 2 Score: 25.409 bits (54), Expect = 2.513e-46
Identity = 12/24 (50.00%), Postives = 12/24 (50.00%), Query Frame = 1 
Query:  400 VADPRRCEPXXXXXXXXXXXXQKS 471
            VADPRRCEP            QKS
Sbjct:  124 VADPRRCEPKKFGGRGARARFQKS 147
[Close]
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_ORYSI (40S ribosomal protein S16 OS=Oryza sativa subsp. indica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.513e-46
Identity = 89/120 (74.17%), Postives = 99/120 (82.50%), Query Frame = 3 
Query:   39 ATAAPKTESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            A   P   +VQCFGR  TAVAV+YCK GRGLIK+NG PIEL+ PE+LR KAFEPILL GR RF  +DMRIRV+GGG TS IYAIRQ+IAKALVA+YQKYVDE SKKE+KDI  RYDRTLL
Sbjct:    4 ALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLL 123

HSP 2 Score: 25.409 bits (54), Expect = 2.513e-46
Identity = 12/24 (50.00%), Postives = 12/24 (50.00%), Query Frame = 1 
Query:  400 VADPRRCEPXXXXXXXXXXXXQKS 471
            VADPRRCEP            QKS
Sbjct:  124 VADPRRCEPKKFGGRGARARFQKS 147
[Close]
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_RAT (40S ribosomal protein S16 OS=Rattus norvegicus GN=Rps16 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 2.667e-42
Identity = 80/113 (70.80%), Postives = 97/113 (85.84%), Query Frame = 3 
Query:   60 ESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            +SVQ FGR  TA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RF GVD+R+RVKGGGH + IYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLL
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLL 120

HSP 2 Score: 22.3274 bits (46), Expect = 2.667e-42
Identity = 11/24 (45.83%), Postives = 11/24 (45.83%), Query Frame = 1 
Query:  400 VADPRRCEPXXXXXXXXXXXXQKS 471
            VADPRRCE             QKS
Sbjct:  121 VADPRRCESKKFGGPGARARYQKS 144
[Close]
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_PIG (40S ribosomal protein S16 OS=Sus scrofa GN=RPS16 PE=2 SV=4)

HSP 1 Score: 171.785 bits (434), Expect = 2.667e-42
Identity = 80/113 (70.80%), Postives = 97/113 (85.84%), Query Frame = 3 
Query:   60 ESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            +SVQ FGR  TA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RF GVD+R+RVKGGGH + IYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLL
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLL 120

HSP 2 Score: 22.3274 bits (46), Expect = 2.667e-42
Identity = 11/24 (45.83%), Postives = 11/24 (45.83%), Query Frame = 1 
Query:  400 VADPRRCEPXXXXXXXXXXXXQKS 471
            VADPRRCE             QKS
Sbjct:  121 VADPRRCESKKFGGPGARARYQKS 144
The following BLAST results are available for this feature:
BLAST of DY259927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
RS161_ARATH1.837e-5385.1240S ribosomal protein S16-1 OS=Arabidopsis thalian... [more]
RS16_FRIAG1.838e-5385.5940S ribosomal protein S16 OS=Fritillaria agrestis ... [more]
RS163_ARATH2.394e-5384.3040S ribosomal protein S16-3 OS=Arabidopsis thalian... [more]
RS16_GOSHI5.878e-5392.9240S ribosomal protein S16 OS=Gossypium hirsutum GN... [more]
RS162_ARATH2.562e-4980.1740S ribosomal protein S16-2 OS=Arabidopsis thalian... [more]
RS16_TORRU2.787e-4883.1940S ribosomal protein S16 OS=Tortula ruralis GN=RP... [more]
RS16_ORYSJ2.513e-4674.1740S ribosomal protein S16 OS=Oryza sativa subsp. j... [more]
RS16_ORYSI2.513e-4674.1740S ribosomal protein S16 OS=Oryza sativa subsp. i... [more]
RS16_RAT2.667e-4270.8040S ribosomal protein S16 OS=Rattus norvegicus GN=... [more]
RS16_PIG2.667e-4270.8040S ribosomal protein S16 OS=Sus scrofa GN=RPS16 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YK17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259927 ID=DY259927; Name=DY259927; organism=Citrus clementina; type=EST; length=1063bp
CACAACACAAACTTTCACTAAGCACTGATCCCAACATGGCTACTGCTGCT
CCTAAAACCGAGTCCGTGCAATGCTTCGGCCGCAATATGACGGCGGTGGC
AGTAACCTACTGCAAGCGCGGCCGCGGCTTGATCAAGATCAACGGCTGCC
CAATCGAGCTTGTGGAGCCAGAGATCCTGCGTTTCAAGGCCTTCGAGCCG
ATCCTATTGCTCGGACGACACCGTTTCAACGGAGTAGACATGAGGATCCG
CGTCAAGGGCGGAGGCCACACGTCTCATATCTACGCTATACGCCAGAGCA
TCGCGAAGGCCTTGGTCGCGTTTTATCAGAAGTACGTGGACGAACAGAGC
AAGAAGGAGATAAAAGACATTCTGGTTAGGTACGATAGGACTTTGCTTTG
TGGCTGATCCTAGACGCTGTGAGCCTAAGAAGTTCGGAGGAGGCGGCGCC
AGGGGTAGGTTCCAGAAATCATAACCGTAAAGAAACAGAAGTTTAGGTTG
GCCTTTTTATTATTGATAATAATTTTGGGTTTTCATCGAACCGATACATT
AAATCGTTCCTTTAACCCAACCTAAATATTGAAAAGGCTAAAACTAATAG
TAAAATGAGAAAATTTAGGTTCAGAAAGAGATCAAAAAGATATTAGATTC
TGCTAACTCAAAATAGGATGTTAAATTAGATCGATAAAGGATATAACAGA
TTTTATACCATGATTATCAAGACAGGATCATAAAGAAAGGTAAAATCTAA
AATACTATCACAAGCACAGGATTACTGATCACCATCTCAAGTCTGCATCC
ATCATTAATCAAACTTACAGAAACCATTTCTAAAAAATAGTGTATCTAAG
ACCAAAGTATGAAAACAGAAAACGTGGAGACAAAAAATCAATATTAGCAG
ATATAACTACTCGTCAACGGTGAGACCCTCAAATAAATAGCATCCTATCA
AACGCACAAATCCAGTCAAATCCTAAATCAAATATATCTGAAACTATTCC
TTATCCGCTGACCCCTACCCTCCCCGTCACACGCTCTATCCTCACCATCC
CCTAACCGCGACT
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