DY259940

Overview
NameDY259940
Unique NameDY259940
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1182
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1362 contig Ccv1_Contig1362:1..1182. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259940 vs. ExPASy Swiss-Prot
Match: C3H67_ARATH (Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g63260 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 1.171e-44
Identity = 104/257 (40.47%), Postives = 137/257 (53.31%), Query Frame = 1
Query:  208 QNENEYGNQMRKRYPYPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKEKVKEREELIERPXXXXXXXXXXXXXXXXXXXX----------------------------KECPYYMRSGSCQYGANCRFNHPDPTAVGGSDSPSGYG-NGGSVSSQAPAQASIGSWSSPMALN--EPAPFVPMMYSPTPGVPSHNYEWNGVSS----PPLSHHKGACSPPPRMSKTKTPGWRMAR*FLHPQRLVEGLPERP 873
            Q E E G++ R    YPVRPD++DC+FYM+TG+CK+GS+CKFNHPVRRK Q  +E+V+ER+E +E P                                                KECP+YMR+GSC++G++C+FNHPDPTA+GG DSP   G NGGS S +AP+QAS  SWSS   +N    APF+P M+  + GV     +WNG  +    PP        S     S  +T  +     + H Q  VE  PERP
Sbjct:   83 QKEEEEGSEKRMMMVYPVRPDSEDCSFYMRTGSCKYGSSCKFNHPVRRKLQIGRERVRERDEDVENPKLMECKYYFRTGGCKYGESCRFSHMKEHNSPASVPELNFLGLPIRPGEKECPFYMRNGSCKFGSDCKFNHPDPTAIGGVDSPLYRGNNGGSFSPKAPSQASSTSWSSTRHMNGTGTAPFIPSMFPHSRGVTPQASDWNGYQASSAYPPERSPLAPSSYQVNNSLAETSSFSQ---YQH-QMSVEEFPERP 335          
BLAST of DY259940 vs. ExPASy Swiss-Prot
Match: C3H43_ARATH (Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g48440 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.870e-42
Identity = 108/279 (38.71%), Postives = 142/279 (50.90%), Query Frame = 1
Query:  253 YPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKE-KVKEREE------LIERPXXXXXXXXXXXXXXXXXXXXKE----------------------CPYYMRSGSCQYGANCRFNHPDPTAVGGSDSPSGYGNG----GSVSSQAPAQASIGSWSSPMALNEPAPFVPMMYSPTPGVPSHNYEWNGVSSPPLSHHKGACSPPPR--MSKTKTPGWRMAR*FLHPQRLVEGLPERPGPGRMAGTS*ERETGSSNSNWQIP-SFPKNRNPHISP 981
            YPVRP A+DC+FYM+TG+CKFGS+CKFNHP+ RK Q +++ KV+E+E+      LI+                       +                      CPYYMR+GSC+YGA C+FNHPDPT +GG+DSPS  GN     G+ S +A  QAS  SWSSP  +N  +PF+P+M S T GV S N EWNG  +   S  +G  SP     M+ +      +   + H Q   E  PERP        S   +TG     +      PKNR P + P
Sbjct:  107 YPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGLIDCKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYGAECKFNHPDPTTIGGTDSPSFRGNNGVSIGTFSPKATFQASSTSWSSPRHVNGTSPFIPVMLSQTHGVTSQNPEWNGYQASVYSSERGVFSPSTTYLMNNSSAETSMLLSQYRH-QMPAEEFPERPD---QPECSYYMKTGDCKFKFNCKYHHPKNRLPKLPP 381          
BLAST of DY259940 vs. ExPASy Swiss-Prot
Match: C3H65_ORYSJ (Zinc finger CCCH domain-containing protein 65 OS=Oryza sativa subsp. japonica GN=Os12g0278800 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.343e-18
Identity = 65/220 (29.55%), Postives = 89/220 (40.45%), Query Frame = 1
Query:  274 QDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKEKVKEREELIERPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHPDPTAVGGSDSPSGYGNGGSVSSQ---APAQASIGSWSSPMALNE-PAPFVPMMYSPTPGV--PSHNY---EWNGVSSPPLS----------HHKGACSPPPRMSKTKTPGWRMAR*FLHPQRLVEGLPERPG 876
            ++C +Y   G CKFG  CK+ H   ++ ++  EKV                              KECPYYMR+GSC+Y  NC+F+HPDP+ V   D    + NG +       + +Q +   W     +NE   PF+    S + G+  P   Y   EWNG    PL+          H   A    P     + PG        H Q   E  PERPG
Sbjct:  241 EECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVD-----------------LNFLGLPLRPGEKECPYYMRTGSCKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSSQPNASIWPDQRTVNEHHVPFIAPSPSYSAGMLPPQGMYPPPEWNGYHQVPLNPYYPPGVPFQHFPAAPINHPMYKAPEIPG--------HQQVPSEEYPERPG 435          
BLAST of DY259940 vs. ExPASy Swiss-Prot
Match: C3H37_ARATH (Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis thaliana GN=HUA1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.006e-16
Identity = 49/158 (31.01%), Postives = 72/158 (45.57%), Query Frame = 1
Query:  253 YPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKEKVKEREELIERPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHPDPTAVGGSDSPSGYGNGGSVSSQAPAQASIGSWSSPMALNEP-APFVPMMYSPTPGVPSHNYE 723
            YP RP   DC +Y+KT  CK+GS CKFNHP     + +   V+ ++ L ERP                      C +YM++G C++G +C+F+HP    +  S    G              +S+G  S P A N P   F P +Y  + G+P  + E
Sbjct:  222 YPERPGEPDCPYYIKTQRCKYGSKCKFNHP----REEAAVSVETQDSLPERPSEPM------------------CTFYMKTGKCKFGLSCKFHHPKDIQLPSSSQDIG--------------SSVGLTSEPDATNNPHVTFTPALYHNSKGLPVRSGE 343          

HSP 2 Score: 83.5741 bits (205), Expect = 2.544e-15
Identity = 37/100 (37.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:  253 YPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKEKVKEREELIERPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHPDPTAV 552
            YP RP   +C +YMKTG CKFG  CKF+HP  R +  +K+  ++    +                         CPYYM++G+C+YGA C+F+HP P  V
Sbjct:  417 YPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLS------------LAGYPRREGALNCPYYMKTGTCKYGATCKFDHPPPGEV 504          
BLAST of DY259940 vs. ExPASy Swiss-Prot
Match: ZFNL_PEA (Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.745e-16
Identity = 68/231 (29.44%), Postives = 102/231 (44.16%), Query Frame = 1
Query:  190 IVQNEIQNENEYGNQMRKRYPYPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKEKVK-EREELIERPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHP-DPTAVGGSDSPS--GYGNGGSVSSQA----PAQASIGS-------WSSPMALNEPAPFV-PMMYSP-TPGVPSHN---YEWNGVSSPPLSHHKGACSPPPRM---SKTKTPGW 813
            I Q  +   N   ++  +  PYP  P   DC++Y++TG C+FG+ C+FNHP  RK   +  ++K E  E + +P                     EC YY+++G+C++GA CRF+HP D   V G  + +  GY    + S +A      Q   G+         S M L+     V P + SP TPG  S+      W+  S  P    +G  S  P +        PGW
Sbjct:    6 IPQEAMWQMNLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGEFPERLGQP---------------------ECQYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPNESERAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRGSTVYPTVQSPTTPGQQSYAAGITNWSSSSYVPSPRWQGPSSYAPLILPQGVVSVPGW 215          
BLAST of DY259940 vs. ExPASy Swiss-Prot
Match: C3H3_ARATH (Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis thaliana GN=At1g04990 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.340e-15
Identity = 53/182 (29.12%), Postives = 83/182 (45.60%), Query Frame = 1
Query:  250 PYPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSS--KEKVKER------EELIE---------------RPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHPDP-----TAVGGSDSPSG---YGNGGSVSSQAPAQASIGSWSSPMALNEPAPFVPMMYSPTPG 702
            PYP RP  +DC FY++TG C +GS+C++NHP       +  KE++ ER      E  ++               +                     K CPYY+R+G+C++G  C+F+HP P     TA G S  P+    Y +G ++ S      + G+   P     P  +VP++ SP+ G
Sbjct:   43 PYPDRPGERDCQFYLRTGLCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNGAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVACKFHHPQPDNGHSTAYGMSSFPAADLRYASGLTMMS------TYGTLPRPQV---PQSYVPILVSPSQG 215          
BLAST of DY259940 vs. ExPASy Swiss-Prot
Match: C3H63_ORYSJ (Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 5.669e-15
Identity = 57/202 (28.22%), Postives = 85/202 (42.08%), Query Frame = 1
Query:  190 IVQNEIQNENEYGNQMRKRYPYPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKEKVK-EREELIERP-------------------------XXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHPDPTAVGGSDSPSGYGNGGSVSSQAPAQASIGSWSSPMALNEPAPFVPMMYSPTPGVPSHN 717
            +V  E   +   G  M    PYP R    DC++YM+TG C+FG  CKFNHP  RK   +  ++K E  + I +P                                             KEC YY+R+G C++G+ C+F+HP P+    +   S Y  G SV+S  P+Q +     +   L+  A F+      +P  P H+
Sbjct:   33 VVDEEAMWQMNLGEAMEAG-PYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVAAARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPNEKECAYYLRTGQCKFGSTCKFHHPQPSNTMVAVRGSVYSPGQSVTS--PSQHTYPGAVTNWPLSRSASFI-----ASPRWPGHS 226          
BLAST of DY259940 vs. ExPASy Swiss-Prot
Match: C3H33_ARATH (Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.649e-14
Identity = 52/191 (27.23%), Postives = 85/191 (44.50%), Query Frame = 1
Query:  181 SNLIVQNEIQNENEYGNQMRKRYPYPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKEKVK-EREELIERPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHP-DPTAVGGSDSPSGYG---NGGSVSSQAPAQASIGSWSSPMALNEPAPFVPMMYSPTPGVPSHNYEWNGVS 738
            S L+ Q+ +   N   ++  +   YP RP   DC++Y++TG C+FGS C+FNHP  R+   +  +++ E  E I +P                     EC YY+++G+C++G  C+F+HP +   + G  S +  G       V      +     +      N P P    M  PT G    +Y W+  S
Sbjct:   13 SPLMNQDAMWQMNLSSDETMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVIATARMRGEYPERIGQP---------------------ECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSG--QQSYPWSRAS 180          
BLAST of DY259940 vs. ExPASy Swiss-Prot
Match: C3H12_ORYSJ (Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=Os01g0917400 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 8.185e-14
Identity = 62/261 (23.75%), Postives = 102/261 (39.08%), Query Frame = 1
Query:  250 PYPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKEKVK-EREELIERPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHP-DPTAVGGSDSPSGYGNGGSVSSQAPA------QASIGSWS--------SPMALNEPAPFVPMMYSPTPGVPSHNYEWNGVSSPPLSHHKGACSPPPRMSK-------------TKTPGWRMAR*FLHPQRLVEGLPERPGPGRMAGTS*ERETGSSNSNWQIP 945
            PYP R    DCT+Y++TG C+FG +C+FNHP  R    +  ++K E  E + +P                     EC YY+++G+C++G  C+F+HP +   + G    +  G     S +  A      Q   G+          + MA +  +P  P ++S     P +       + P     +G+  P PR                 + P W      + P    E   + PG  +  GTS + +  + N     P
Sbjct:   76 PYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIASARMKGEYPERMGQP---------------------ECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSEKECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPSVHSSATAGPPYTGTMASWAFP-----RGSFIPSPRWQNPSNYAPMIVPQGLVQVPSWNSYTGQMMPVSSSESRLQSPGAQQTYGTSQQVDASAGNQGMLSP 310          

HSP 2 Score: 73.559 bits (179), Expect = 2.633e-12
Identity = 42/126 (33.33%), Postives = 61/126 (48.41%), Query Frame = 1
Query:  235 MRKRYPYPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKEKVKEREELIERPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHPDPTAVGGSDSPSGYGNGGSVSSQAP 612
            +++   +P RPD  +C +YMKTG CKFG+ CKF+HP R ++  + + V     L  RP                    + C +Y R G C++GANC+F+HP          P G    GS S+  P
Sbjct:  323 LQRENVFPERPDQPECQYYMKTGDCKFGAVCKFHHP-RVRSMPTPDCVLSPVGLPLRP------------------GEELCKFYSRYGICKFGANCKFDHPTMA------PPMGVYAYGSASTNVP 423          
BLAST of DY259940 vs. ExPASy Swiss-Prot
Match: C3H43_ORYSJ (Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa subsp. japonica GN=Os06g0520600 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.396e-13
Identity = 37/104 (35.58%), Postives = 53/104 (50.96%), Query Frame = 1
Query:  226 GNQMRKRYPYPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQSSKEKVKEREELIERPXXXXXXXXXXXXXXXXXXXXKECPYYMRSGSCQYGANCRFNHP 537
            G   +    +P RP   DC++Y+K G+CKFG +C +NHP  R    + +K K  E+   RP                     +C YY++ GSC++G NCRFNHP
Sbjct:   32 GKTKKVEEQHPRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDK-KPAEQFPRRP------------------GEPDCSYYVKFGSCKFGMNCRFNHP 116          
The following BLAST results are available for this feature:
BLAST of DY259940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
C3H67_ARATH1.171e-4440.47Zinc finger CCCH domain-containing protein 67 OS=A... [more]
C3H43_ARATH1.870e-4238.71Zinc finger CCCH domain-containing protein 43 OS=A... [more]
C3H65_ORYSJ9.343e-1829.55Zinc finger CCCH domain-containing protein 65 OS=O... [more]
C3H37_ARATH3.006e-1631.01Zinc finger CCCH domain-containing protein 37 OS=A... [more]
ZFNL_PEA8.745e-1629.44Zinc finger CCCH domain-containing protein ZFN-lik... [more]
C3H3_ARATH4.340e-1529.12Zinc finger CCCH domain-containing protein 3 OS=Ar... [more]
C3H63_ORYSJ5.669e-1528.22Zinc finger CCCH domain-containing protein 63 OS=O... [more]
C3H33_ARATH1.649e-1427.23Zinc finger CCCH domain-containing protein 33 OS=A... [more]
C3H12_ORYSJ8.185e-1423.75Zinc finger CCCH domain-containing protein 12 OS=O... [more]
C3H43_ORYSJ1.396e-1335.58Zinc finger CCCH domain-containing protein 43 OS=O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YL08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259940 ID=DY259940; Name=DY259940; organism=Citrus clementina; type=EST; length=1182bp
CCACCGTCCGATCTTGATTACACTGCAGGAATTGAGGAAGAGCTGCGAAA
TCTCGATTTGAGAGAGGCGGAAGAGATAGATTCAATCAAAGCAGCGGAAA
TAGAAATAGTAGTTGAAGAAGAAGACGAAGAGGAAGAGGAAGAGGAAGAG
GAAGAAAGCGAGAGTGATGAAAACCATAAAAGTAACCTTATAGTTCAGAA
TGAGATTCAAAATGAGAATGAGTATGGAAATCAAATGAGAAAAAGGTATC
CCTATCCAGTGAGACCCGACGCTCAAGATTGTACTTTTTATATGAAAACA
GGTACCTGCAAGTTTGGGTCCAATTGTAAGTTTAATCATCCTGTTCGTAG
AAAAAACCAGTCTTCTAAAGAGAAGGTGAAGGAAAGAGAGGAACTGATTG
AGAGGCCCGGCCAGAGCCAGAGCCAAGGCCAGAGTGAGAGTCAAAGCCAG
ATAGAATGCGAGGGTGAGAAGGAGTGCCCTTATTACATGCGTAGTGGTTC
CTGCCAGTATGGTGCTAATTGCAGGTTTAATCATCCTGATCCTACAGCTG
TTGGCGGGTCTGACTCTCCTTCAGGATATGGTAATGGTGGATCTGTCTCA
TCACAGGCTCCAGCACAAGCAAGTATAGGATCCTGGTCATCACCTATGGC
TTTAAATGAACCTGCGCCCTTTGTGCCAATGATGTATTCACCAACTCCAG
GGGTTCCTTCCCATAATTACGAATGGAATGGGGTATCGTCCCCCCCCCTA
TCCCACCACAAAGGAGCGTGCAGCCCGCCCCCCCGTATGTCGAAAACAAA
AACCCCTGGGTGGAGAATGGCCCGATAATTCCTTCACCCGCAAAGGCTAG
TTGAGGGGCTCCCCGAACGACCGGGGCCCGGCCGGATGGCGGGTACTTCC
TAGGAACGGGAGACCGGTAGTTCAAACTCCAATTGGCAAATTCCCTCCTT
CCCAAAAAATCGGAACCCCCACATTTCCCCCCTATGGCCCCTCCACCCGC
ACAAGGGGTGTGGCCCCCGGGGGGCCGTGGGTACAAAGTGTCTGTTCCTT
TTTTTAACCCGGCTCTGGGGGATTTTTGCGACTTATTGGGGCGCGGCCCT
TTCTATACAGTTACCACCTCCCTAAACCCTCACTCCCGACGCTTGCTCCT
CCGCGGCCAGAGGGGCCCTCCCCCGCCCCCCG
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