DY259941

Overview
NameDY259941
Unique NameDY259941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length988
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig655 contig Ccv1_Contig655:59..1046. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259941 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 3.436e-68
Identity = 138/217 (63.59%), Postives = 160/217 (73.73%), Query Frame = 1
Query:  340 SGNTRKLDRRYSRIADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFRFYSGGRFCYGFEEVLSPYREIVPNLKLAGPTSFAPVFELVMFYLEPSGGPVPCYIYNWLM----GRETERVKTLPGCLNPPGQKNS*MHLKNQASLPCPFVPFGEQKGP 978
            S N ++L+R+YS+I+DDY SL+QVTEALARAGLESSNLIVGIDFTKSNEWTG RSFNR+SLH+IG   NPYEQAI+IIG+TLA FDEDNLIPCYGFGDASTHDQDVF F S  RFC GFEEVLS Y+EIVP LKLAGPTSFAP+ ++ M  +E SGG      Y+ L+    G+ T  V T  G L+P  QK     +   + LP   V  G   GP
Sbjct:   86 SDNKKRLERKYSKISDDYSSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRKSLHFIGSSPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFNSEDRFCNGFEEVLSRYKEIVPQLKLAGPTSFAPIIDMAMTIVEQSGGQ-----YHVLVIIADGQVTRSVDTENGQLSPQEQKTV-DAIVQASKLPLSIVLVGVGDGP 296          
BLAST of DY259941 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 1.222e-65
Identity = 134/213 (62.91%), Postives = 157/213 (73.71%), Query Frame = 1
Query:  352 RKLDRRYSRIADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFRFYSGGRFCYGFEEVLSPYREIVPNLKLAGPTSFAPVFELVMFYLEPSGGPVPCYIYNWLM----GRETERVKTLPGCLNPPGQKNS*MHLKNQASLPCPFVPFGEQKGP 978
            +K DRRYS+I+D+Y SL QV+EAL RAGLESSNLIVGIDFTKSNEWTG +SFNR+SLH++ +  NPYEQAI+IIG+TLA FDEDNLIPCYGFGDASTHDQDVF FY  GRFC GFEEVL+ YREIVP LKLAGPTSFAP+ E+ M  +E S G      Y+ L+    G+ T  V T  G L+P  QK     +K  ++LP   V  G   GP
Sbjct:  124 KKFDRRYSKISDNYSSLLQVSEALGRAGLESSNLIVGIDFTKSNEWTGAKSFNRKSLHHLSNTPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFYPEGRFCNGFEEVLARYREIVPQLKLAGPTSFAPIIEMAMTVVEQSSGQ-----YHVLVIIADGQVTRSVDTEHGRLSPQEQKTVDAIVK-ASTLPLSIVLVGVGDGP 330          
BLAST of DY259941 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 2.844e-30
Identity = 64/133 (48.12%), Postives = 89/133 (66.92%), Query Frame = 1
Query:  391 YKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDG-LNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFRF---YSGGRFCYGFEEVLSPYREIVPNLKLAGPTSFAPVFE 777
            +K+LD + +A+  AGLE SNLI GID+TKSN + G+R+F++R LH I    +NPY+Q I I+GKTL+ FD D  IP YGFGD    D  +F     Y   + C GFEEVL  Y E+ P ++++GPT+F P+ +
Sbjct: 7299 FKTLDDIVKAIKHAGLEYSNLIFGIDYTKSNFYQGERTFDKRPLHTIDPAEMNPYQQVIQIVGKTLSSFDADGQIPAYGFGDEEFTDHGIFNIAERYDLEKDCNGFEEVLRVYNEVTPTIEMSGPTNFVPLID 7431          
BLAST of DY259941 vs. ExPASy Swiss-Prot
Match: CPNE1_HUMAN (Copine-1 OS=Homo sapiens GN=CPNE1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.674e-12
Identity = 49/152 (32.24%), Postives = 73/152 (48.03%), Query Frame = 1
Query:  346 NTRKLDRRYSRIADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGD-GLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDV-----FRFYSGGRFCYGFEEVLSPYREIVPNLKLAGPTSFAPVFELV 783
            N+  +  +  R+  +Y  LD V       G    N  VG+DFT SN   G  S +  SLHY+   G+N Y  A+  +G  +  +D D L P +GFG     D  V       F     +C G + ++  YR+ +P ++L GPT+FAP+   V
Sbjct:  257 NSGTIRVKICRVETEYSFLDYVM------GGCQINFTVGVDFTGSN---GDPS-SPDSLHYLSPTGVNEYLMALWSVGSVVQDYDSDKLFPAFGFGAQVPPDWQVSHEFALNFNPSNPYCAGIQGIVDAYRQALPQVRLYGPTNFAPIINHV 398          
BLAST of DY259941 vs. ExPASy Swiss-Prot
Match: CPNE1_MOUSE (Copine-1 OS=Mus musculus GN=Cpne1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.561e-12
Identity = 48/142 (33.80%), Postives = 69/142 (48.59%), Query Frame = 1
Query:  376 RIADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGD-GLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDV-----FRFYSGGRFCYGFEEVLSPYREIVPNLKLAGPTSFAPVFELV 783
            R+  +Y  LD V       G    N  VG+DFT SN   G  S +  SLHY+   G+N Y  A+  +G  +  +D D L P +GFG     D  V       F     +C G + ++  YR+ +P ++L GPT+FAP+   V
Sbjct:  266 RVETEYSFLDYVM------GGCQINFTVGVDFTGSN---GDPS-SPDSLHYLSPTGVNEYLTALWSVGSVVQDYDSDKLFPAFGFGAQVPPDWQVSHEFALNFNPSNPYCAGIQGIVDAYRQALPQVRLYGPTNFAPIINHV 397          
BLAST of DY259941 vs. ExPASy Swiss-Prot
Match: CPNE3_PONAB (Copine-3 OS=Pongo abelii GN=CPNE3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.043e-11
Identity = 41/118 (34.75%), Postives = 61/118 (51.69%), Query Frame = 1
Query:  448 NLIVGIDFTKSNEWTGKRSFNRRSLHYIG-DGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDV-----FRFYSGGRFCYGFEEVLSPYREIVPNLKLAGPTSFAPVFELV 783
            N  VG+DFT SN+    RS +  SLHYI  +G+N Y  A+  +G  +  +D D + P +GFG        V       F     +C G + ++  YR  +P +KL GPT+F+P+   V
Sbjct:  291 NFTVGVDFTGSND--DPRSPD--SLHYISPNGVNEYLTALWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRSCLPQIKLYGPTNFSPIINHV 404          
The following BLAST results are available for this feature:
BLAST of DY259941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RGLG2_ARATH3.436e-6863.59E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH1.222e-6562.91E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
CPNA2_CAEEL2.844e-3048.12Copine domain-containing protein 2 OS=Caenorhabdit... [more]
CPNE1_HUMAN2.674e-1232.24Copine-1 OS=Homo sapiens GN=CPNE1 PE=1 SV=1[more]
CPNE1_MOUSE4.561e-1233.80Copine-1 OS=Mus musculus GN=Cpne1 PE=1 SV=1[more]
CPNE3_PONAB5.043e-1134.75Copine-3 OS=Pongo abelii GN=CPNE3 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YL09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259941 ID=DY259941; Name=DY259941; organism=Citrus clementina; type=EST; length=988bp
CTTGTTTTCATTTGGATTGGTTTGGCAAATCTAGTGGTTTGAGGTCTCGT
CTTTGGATTGATTTCATTGATTTTTGTTGTGTGTTGCGAAGGAGAACAGA
GGTTCTTGTTAGAAATTGGTGAATTGCTGTGGATAATTGAGTTGATGGGA
GGCAGAAGCTCCAGGGAGGCGAGTTGGAGGCAGGATTCATCGTTCCGATC
AACTTCTTCATCTTGGGATCCTCAAACCGGGTATTTGCAGTCCCCTTACG
GTCAAGAAAGTCAGAATTATCCACCTCAGACTTATCCGCCCCCACAAACA
TATTCCACACAGCAGTATTATCCATCTTCTGAAGAACACAGCGGCAATAC
AAGGAAGCTTGATAGGAGATATTCAAGAATTGCTGATGATTACAAGTCCT
TAGACCAGGTGACTGAAGCTCTTGCTCGTGCTGGCCTTGAATCTTCTAAT
CTCATTGTTGGTATTGATTTCACAAAGAGTAATGAGTGGACAGGTAAAAG
GTCATTTAACAGACGAAGCCTGCATTACATCGGAGATGGTTTAAATCCCT
ATGAGCAAGCAATATCCATTATTGGGAAAACTTTAGCTGTCTTTGACGAG
GATAACTTGATTCCCTGTTATGGATTTGGTGATGCATCAACTCATGATCA
AGATGTCTTCCGTTTCTATTCAGGTGGGAGGTTTTGTTATGGATTTGAGG
AGGTATTAAGTCCGTACCGGGAAATTGTGCCTAATCTAAAACTTGCAGGA
CCAACATCATTTGCCCCCGTCTTTGAATTGGTAATGTTCTACCTTGAGCC
CAGTGGTGGCCCAGTACCATGTTATATTTATAATTGGCTGATGGGCAGGG
AAACAGAAAGGGTTAAAACCTTGCCTGGTTGCCTTAACCCCCCGGGACAA
AAAAACAGTTGAATGCATTTGAAAAACCAAGCCAGCCTTCCCTGTCCATT
TGTTCCATTTGGGGAACAAAAAGGGCCCCCGGAACCTC
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