DY259942

Overview
NameDY259942
Unique NameDY259942
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1083
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1363 contig Ccv1_Contig1363:1..1083. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY259942 vs. ExPASy Swiss-Prot
Match: PAO4_ARATH (Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.835e-25
Identity = 52/62 (83.87%), Postives = 59/62 (95.16%), Query Frame = 2 
Query:    2 QKVRDEHTNDMSVLQAISIVLDRHPELRQEGLAYEVLQWYICRMEAWFAVDADMISLKCWDQ 187
            +K+RDE  NDMSVLQ ISIVLDR+PELRQEG+AYEVLQWY+CRMEAWFAVDA++ISLKCWDQ
Sbjct:  152 EKIRDETANDMSVLQGISIVLDRNPELRQEGMAYEVLQWYLCRMEAWFAVDANLISLKCWDQ 213
[Close]
BLAST of DY259942 vs. ExPASy Swiss-Prot
Match: PAO3_ARATH (Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.567e-19
Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = 2 
Query:    5 KVRDEHTNDMSVLQAISIVLDRHPELRQEGLAYEVLQWYICRMEAWFAVDADMISLKCWDQ 187
            KVRDE   DMS+ QA SIV  R+PELR EGLA+ VLQWY+CRME WFA DA+ IS KCWDQ
Sbjct:  153 KVRDEQDEDMSIAQAFSIVFKRNPELRLEGLAHNVLQWYLCRMEGWFAADAETISAKCWDQ 213
[Close]
BLAST of DY259942 vs. ExPASy Swiss-Prot
Match: PAO2_ARATH (Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.664e-18
Identity = 42/61 (68.85%), Postives = 47/61 (77.05%), Query Frame = 2 
Query:    5 KVRDEHTNDMSVLQAISIVLDRHPELRQEGLAYEVLQWYICRMEAWFAVDADMISLKCWDQ 187
            KVRDE   D+S+ QA SIV  R PELR EGLA+ VLQWY+CRME WFA DA+ IS KCWDQ
Sbjct:  152 KVRDEQDADISISQAFSIVFSRKPELRLEGLAHNVLQWYVCRMEGWFAADAETISAKCWDQ 212
The following BLAST results are available for this feature:
BLAST of DY259942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PAO4_ARATH1.835e-2583.87Probable polyamine oxidase 4 OS=Arabidopsis thalia... [more]
PAO3_ARATH2.567e-1970.49Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO... [more]
PAO2_ARATH1.664e-1868.85Probable polyamine oxidase 2 OS=Arabidopsis thalia... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YL10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259942 ID=DY259942; Name=DY259942; organism=Citrus clementina; type=EST; length=1083bp
GCAGAAAGTGAGAGATGAACACACCAATGACATGTCTGTTCTTCAAGCAA
TATCCATTGTGTTAGATAGGCATCCAGAACTAAGACAAGAAGGACTTGCC
TATGAAGTGCTGCAGTGGTACATATGTAGAATGGAAGCTTGGTTTGCAGT
AGATGCCGATATGATATCATTGAAATGTTGGGATCAGGTGAATGAAATTT
TTATGTGCATTTTAATTTTGGGATATTTAGTTGACTCCGACCTCCTGGTG
GTAATTTGCAATTTTCTTGCATACACGGTCTTATGTAGAATTGAGTATTG
GTAAATCTTTGACTTTACAATTGATGTCTTTCTTTATATGTGATGCTCGA
AACTTGTGTGGTGGACTGAAATGTAATAAATGAAATTGAGTATAAAGATA
TCAGAGGGATTCTTACATGTTGGATGGTCATTCTTGATGTATAGGAGCAA
GTTCTTTCTGGTGGTCATGGACTTATGGTGCAAGGTTATGACCCTGTAAT
AAAAGCTCTTTCAAAAGATATCGACATACACTTGAATCAAAGGTGAGTTT
TTTGGTTCATTATTGACCTACTGCTAGCTCTATTTGGTATAACTTTTTAA
ACAGAGCTTATAAAAGTAGAGCATTCCGCGTGCCCCCCCCCCCCCCCCAA
AAAAAACCCCAAAAAAAAAAAAACAAATAAATATATTTGATGCAAGAAAT
GTACCAAGAAGAAAAAAAAAAAATTCCATAAAAACAAAATAAAAAAATCC
CTAAGCCCCAAAAACTGTAAATCCCATAAAAATTAAAAACCCACTTTTGA
AATTACCACAAATTTGCTTCCCAATTAATCCAAAAAAAGTAAAAATTTTA
CCAAAATATGTTATATGGTTGGGCGTCCAAGAAATTTTTTCCAAAAATAA
TAAAATTACCTTAAAAAAAAAATTTTTTTTAAATATTTTTTCAAAAAAAA
AAAAAAAAATATTTCAAAAAAATTGGGGGGTTTTTAGGGCCCCCCCCCCC
CCCCCTGCCCCAAACCCCCCAATTTTGTTTTTTTTAAAAAAAAACCAAAA
AATTTTTTTTTTTTTCCCAAAACCCCCCCCCCC
back to top