DY259950

Overview
NameDY259950
Unique NameDY259950
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1027
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1367 contig Ccv1_Contig1367:1..1027. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259950 vs. ExPASy Swiss-Prot
Match: PAP4_ARATH (Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana GN=PAP4 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 3.733e-57
Identity = 113/199 (56.78%), Postives = 143/199 (71.86%), Query Frame = 3
Query:  141 DKRRNRVSFFSGFS------NKRVES---FKEELFQAIKPLDRGAEASPEDQSRVDQIARKLEAVNDIKEPLKSNLLNGKWEXXXXXXXXXXXXKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIAGLIPIKSPGSGRGQLEITYLDEELRISRGNRGNLFILKMVDPSYRVPL 710
            D+ R RV     F       N R E     K+EL +AI+PL+RGA ASP+DQ R+DQ+ARK+EAVN  KEPLKS+L+NGKWE            K+P+FLR     YQ+IN+DTL+ QN+ETWPF+N  T ++ PLNSK+VAVK   F+I G IPIK+P S RG+LEITY+DEELR+SRG++GNLFILKM DP+YR+PL
Sbjct:   45 DRERLRVQAIFSFPPAFLTRNGRAEKQKQLKQELLEAIEPLERGATASPDDQLRIDQLARKVEAVNPTKEPLKSDLVNGKWELIYTTSASILQAKKPRFLRSITN-YQSINVDTLKVQNMETWPFYNSVTGDIKPLNSKKVAVKLQVFKILGFIPIKAPDSARGELEITYVDEELRLSRGDKGNLFILKMFDPTYRIPL 242          
BLAST of DY259950 vs. ExPASy Swiss-Prot
Match: PAP5_ARATH (Probable plastid-lipid-associated protein 5, chloroplastic OS=Arabidopsis thaliana GN=PAP5 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.768e-52
Identity = 112/205 (54.63%), Postives = 142/205 (69.27%), Query Frame = 3
Query:  117 KPLNSSVSDKRRNRV-SFFS-----GFSNKRVESFKEELFQAIKPLDRGAEASPEDQSRVDQIARKLEAVNDIKEPLKSNLLNGKWEXXXXXXXXXXXXKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIAGLIPIKSP-GSGRGQLEITYLDEELRISRGNRGNLFILKMVDPSYRVPL 710
            K L+    D+ R R+ + FS     G + KR +  K EL +AI+PL+RGA ASP+DQ  +DQ+ARK+EAVN  KEPLKS+L+NGKWE            K+P+FLR     YQ IN+DTL+ Q +ETWPF+N  T +L PLNSK VAVK   F+I G IP+K+P G+ RG+LEITY+DEELRISRG    LFILKM DP+YR+PL
Sbjct:   32 KLLSIRKGDRERLRIQAVFSFPPRNGGAEKR-KQLKHELVEAIEPLERGATASPDDQLLIDQLARKVEAVNPTKEPLKSDLINGKWELIYTTSAAILQAKKPRFLRSLTN-YQCINMDTLKVQRMETWPFYNSVTGDLTPLNSKTVAVKLQVFKILGFIPVKAPDGTARGELEITYVDEELRISRGKGNLLFILKMFDPTYRIPL 234          
The following BLAST results are available for this feature:
BLAST of DY259950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PAP4_ARATH3.733e-5756.78Probable plastid-lipid-associated protein 4, chlor... [more]
PAP5_ARATH2.768e-5254.63Probable plastid-lipid-associated protein 5, chlor... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YL22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259950 ID=DY259950; Name=DY259950; organism=Citrus clementina; type=EST; length=1027bp
CTTCTTCATCTCTATTTTGTTTTTCATCTGATTTCGCTTCTTCTTCGCTT
AATTTATTCTATTCAAAACCAAATATTATAATTAGAACCCATTTGTTATT
TTGCCCCCGAAACCAAAAGCCATTGAATTCCTCGGTTTCCGACAAACGGA
GAAATAGAGTGTCTTTCTTTTCAGGATTTTCGAACAAAAGAGTTGAGAGC
TTCAAGGAGGAGCTTTTCCAGGCAATAAAGCCTCTTGATCGTGGCGCCGA
GGCTTCTCCTGAGGACCAATCACGTGTTGATCAGATTGCTCGCAAACTTG
AGGCAGTGAATGATATAAAGGAACCTCTAAAGTCTAACTTACTGAATGGG
AAATGGGAGCTTTTATATACTACATCTCAATCACTTCTGCAGACAAAGAG
ACCAAAATTCCTGCGACCGAATGGAAAAATCTACCAGGCAATAAATATCG
ACACATTGAGAGCTCAAAATATAGAAACTTGGCCATTTTTTAATCAGGCC
ACAGCGAACTTGGTACCTCTAAATTCTAAAAGAGTGGCTGTTAAATTTGA
CTATTTCAGGATTGCAGGTCTGATACCAATTAAGTCACCTGGTAGCGGGC
GTGGACAATTGGAAATTACATACTTGGACGAGGAGTTAAGAATCTCAAGA
GGGAATAGAGGGAATCTGTTCATTTTAAAAATGGTGGATCCGTCCTATAG
AGTTCCTCTCTGACGCCGCCTTAGCGAAAAAAGGGATCATTGAAGCCCAC
ACAAGTAAATTTTCCGATTGCCAGATTTGAAATCCAATCCGCCCCATTCA
ATTACCTGCTAATTGGCCCAGGAAACTGAAAATATACTTACTCCGCTTTG
TGGCCAGCCCACAGTTTGGGTGATTACTTTGTTAACCTTCTAATTTAAAA
CTTTTTGGAATCCCCGGCCCAGGAAGGAAATGATTTGGAAAAGAAACGGT
ACGTTTCCAGGGTAATTCCCAAAAAACCAAAAATCCCCGGTTACGCCGGG
AAAGGGAAAAAACCATTTTACTTTTAC
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