DY259951

Overview
NameDY259951
Unique NameDY259951
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length938
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1368 contig Ccv1_Contig1368:1..938. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259951 vs. ExPASy Swiss-Prot
Match: TRM2_ARATH (Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase 2 OS=Arabidopsis thaliana GN=At3g02320 PE=2 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 2.616e-30
Identity = 67/110 (60.91%), Postives = 81/110 (73.64%), Query Frame = 1
Query:    1 HPVKF*LPDQPGSVILAREPTLQANFARAVASLSKAQAKKVARFLPNPEKHWGPKPRAGRQITSKHISLLGAEAVNGHLSL---------EDGEEPDAKRQKTEDTTQKT 303
            HP+K   P+QPGSVIL++EP+ + +F+R + SLSKAQAKKVARFLPNPEKHWGPK RAGRQITSKH+SL+G EAVNGHLS          E+ E  D  + K +   QKT
Sbjct:  472 HPIKAQSPEQPGSVILSKEPSHEVDFSRHIGSLSKAQAKKVARFLPNPEKHWGPKLRAGRQITSKHVSLIGHEAVNGHLSQHHEELKEEDEEAEPEDNVQDKVDPKRQKT 581          
BLAST of DY259951 vs. ExPASy Swiss-Prot
Match: TRM1_ARATH (Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase 1 OS=Arabidopsis thaliana GN=At5g15810 PE=2 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 7.610e-30
Identity = 64/100 (64.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:    1 HPVKF*LPDQPGSVILAREPTLQANFARAVASLSKAQAKKVARFLPNPEKHWGPKPRAGRQITSKHISLLGAEAVNGHLSLEDGEEPDAKRQKTEDTTQK 300
            HP+K   P+ PGSVIL++EP+ QA+F+R V SLSKAQAKKVARFLPNPEKHWGPK RAGR ITSKH+SLLG EAVNGHL+    E  D + ++ E+  ++
Sbjct:  472 HPIKPQSPEHPGSVILSKEPSHQADFSRHVGSLSKAQAKKVARFLPNPEKHWGPKIRAGRTITSKHVSLLGHEAVNGHLNNNHKEAGDEEEEEEEEEPEE 571          
The following BLAST results are available for this feature:
BLAST of DY259951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRM2_ARATH2.616e-3060.91Probable N(2),N(2)-dimethylguanosine tRNA methyltr... [more]
TRM1_ARATH7.610e-3064.00Probable N(2),N(2)-dimethylguanosine tRNA methyltr... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YL23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259951 ID=DY259951; Name=DY259951; organism=Citrus clementina; type=EST; length=938bp
CATCCAGTCAAATTTTAACTGCCTGATCAGCCAGGAAGTGTAATACTAGC
AAGGGAACCAACTCTTCAAGCCAATTTTGCTCGAGCTGTTGCGTCTCTCA
GCAAGGCACAAGCCAAGAAGGTTGCTCGCTTCCTTCCGAATCCTGAAAAG
CACTGGGGTCCTAAACCCAGAGCTGGTCGTCAAATCACAAGCAAACACAT
CTCTCTTCTAGGTGCAGAGGCTGTCAATGGACATCTTAGCCTTGAAGATG
GTGAAGAGCCTGATGCCAAGCGTCAGAAGACGGAGGACACCACTCAGAAG
ACTGAGGATGCCACCCCAAGTTCATGAAATAAATATCTTTCCCAATATTT
TTTTTTCCTCAATTTTTTTCACTCCACCCTTAACTGCTCCACAGCTCGCT
TTAGTCTCCCGCATGTATTTGAAAATTTTGTCTAATTCTTTATTGAGGAG
GAGAAGACGCCGTACCCAACAGTTTGGAGGGAGCCGTCATAAAATTAACC
CTAGACACAAATCCAGAACGCTATACTGAACATCAGAACTCCCGTCTTGA
GGGGACATACCGCCATTTTCGACCCTCCCTCATGTTTATTGTCTCACTCA
TATCATTCACATCACATATCCTCAATATACAAAACCCGAATCTACAGCGC
AGATGCCAATACTGCTCCTAGCCAAAAATTCCTACATATCAACCTTCTAC
CTCCAGCCTTCTCATCACCCCCCCCCACTCAAGATCCAACATCCACCCTC
CTATCCCTCCTCCCCCCCTTCGCCCCCCTCACGAAGCCACCCGCGTGTCG
CACCCCTCGCATCTGCTCCTCCACACCGCCACTCTTCTAACAAAAAAACC
ACAAAAAATAAACATAAGACATCTAATCCACCACCCATGTCTCATTGACC
ACATATTAATCGAACTCCCCCCAGGCGCTCTCAAAGAC
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