DY259954

Overview
NameDY259954
Unique NameDY259954
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length975
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259954 vs. ExPASy Swiss-Prot
Match: STAD_SIMCH (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Simmondsia chinensis PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.483e-59
Identity = 120/202 (59.41%), Postives = 140/202 (69.31%), Query Frame = 2
Query:   95 AACSPLVPNPAH---HRLTAASSTVRF--RQISAVAAPPKP-------KTHSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRPGDLLKSFLDLSGRVHMLLIENTVPYLNSAGWTP 664
            A  S  +P   H   HR+  ASST+    ++I     P  P       KTHSMPP+K+E+FKSLE WA  NVL  LKPVEKCWQPQDFLPDP      F DQV+ LRERT  +PD+Y VVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WAIW R+WTAEENR GDLL  +L L+GRV M  IE T+ YL  +G  P
Sbjct:   15 AVTSSGLPRSYHLRSHRVFMASSTIGITSKEIPNAKKPHMPPREAHVQKTHSMPPQKIEIFKSLEGWAEENVLVHLKPVEKCWQPQDFLPDPAS--EGFMDQVKELRERTKEIPDEYLVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLTGRVDMKQIEKTIQYLIGSGMDP 214          

HSP 2 Score: 23.0978 bits (48), Expect = 2.483e-59
Identity = 7/13 (53.85%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  660 PREQKKPYRGFVY 698
            PR +  PY GF+Y
Sbjct:  214 PRSENNPYLGFIY 226          
BLAST of DY259954 vs. ExPASy Swiss-Prot
Match: STAD_SOLCO (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum commersonii PE=2 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 9.354e-59
Identity = 118/204 (57.84%), Postives = 138/204 (67.65%), Query Frame = 2
Query:   74 VTSTKRPAACSPLVPNPAHHRLTAASSTVRFRQISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRPGDLLKSFLDLSGRVHMLLIENTVPYLNSAGWTPGTK 673
            + +T+RP  CSPL         T    +V    +    +PP+      THSMPPEK E+F SL  WA NN+L  LKPVEKCWQ  DFLPDP      F DQV+ LRER   +PDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS +PWAIW R+WTAEENR GDLL  +L LSGRV M  IE T+ YL  +G  P T+
Sbjct:   13 IKTTRRP--CSPLRSPRVFMASTLRPPSVEDGNVKKPFSPPREVHVQVTHSMPPEKREIFDSLHGWADNNILVHLKPVEKCWQASDFLPDPAS--EGFEDQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTE 212          

HSP 2 Score: 22.7126 bits (47), Expect = 9.354e-59
Identity = 7/13 (53.85%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  660 PREQKKPYRGFVY 698
            PR +  PY GF+Y
Sbjct:  209 PRTENNPYLGFIY 221          
BLAST of DY259954 vs. ExPASy Swiss-Prot
Match: STAD_RICCO (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.220e-58
Identity = 116/217 (53.46%), Postives = 144/217 (66.36%), Query Frame = 2
Query:   53 MQASQFLVTSTKRPAACSPLVPNPAHHRL----TAASSTVRFRQISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRPGDLLKSFLDLSGRVHMLLIENTVPYLNSAGWTPGTKKT 679
            ++ + FL  + K P+   P + +    +     T  S +     +     PP+      THSMPP+K+E+FKSL+ WA  N+L  LKPVEKCWQPQDFLPDP      F +QVR LRER   +PDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WAIW R+WTAEENR GDLL  +L LSGRV M  IE T+ YL  +G  P T+ +
Sbjct:    3 LKLNPFLSQTQKLPSFALPPMASTRSPKFYMASTLKSGSKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPAS--DGFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENS 217          

HSP 2 Score: 22.7126 bits (47), Expect = 1.220e-58
Identity = 7/13 (53.85%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  660 PREQKKPYRGFVY 698
            PR +  PY GF+Y
Sbjct:  212 PRTENSPYLGFIY 224          
BLAST of DY259954 vs. ExPASy Swiss-Prot
Match: STAD_SOYBN (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Glycine max GN=ACPD PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.072e-58
Identity = 112/184 (60.87%), Postives = 132/184 (71.74%), Query Frame = 2
Query:  140 TAASSTVRFRQISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRPGDLLKSFLDLSGRVHMLLIENTVPYLNSAGWTPGTKKT 679
            T  S +     I     PP+      THSMPP+K+E+F+SLE WA  N+L  LKPVEKCWQPQDFLPDP+     F +QV+ LRER   LPDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WAIW R+WTAEENR GDLL  +L LSGRV M  IE T+ YL  +G  P T+ +
Sbjct:   31 TLRSGSKEVENIKKPFTPPREVHVQVTHSMPPQKIEIFQSLEDWAEENILAHLKPVEKCWQPQDFLPDPSS--DGFEEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPRTENS 212          

HSP 2 Score: 22.7126 bits (47), Expect = 2.072e-58
Identity = 7/13 (53.85%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  660 PREQKKPYRGFVY 698
            PR +  PY GF+Y
Sbjct:  207 PRTENSPYLGFIY 219          
BLAST of DY259954 vs. ExPASy Swiss-Prot
Match: STAD_CUCSA (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.524e-58
Identity = 107/156 (68.59%), Postives = 124/156 (79.49%), Query Frame = 2
Query:  206 THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRPGDLLKSFLDLSGRVHMLLIENTVPYLNSAGWTPGTK 673
            THSMPP+K+E+FKSLE WA  N+L  LKPVE+CWQPQDFLPD    F  F +QVR LRER   LPD+YFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS +PWAIW R+WTAEENR GDLL  +L LSGRV M  +E T+ YL  +G  P T+
Sbjct:   62 THSMPPQKMEIFKSLEDWAEENLLVHLKPVERCWQPQDFLPDSA--FEGFHEQVRELRERAKELPDEYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQVEKTIQYLIGSGMDPRTE 215          

HSP 2 Score: 22.7126 bits (47), Expect = 3.524e-58
Identity = 7/13 (53.85%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  660 PREQKKPYRGFVY 698
            PR +  PY GF+Y
Sbjct:  212 PRTENNPYLGFIY 224          
BLAST of DY259954 vs. ExPASy Swiss-Prot
Match: STAD_GOSHI (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.018e-57
Identity = 107/162 (66.05%), Postives = 123/162 (75.93%), Query Frame = 2
Query:  194 PKPKTHSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRPGDLLKSFLDLSGRVHMLLIENTVPYLNSAGWTPGTKKT 679
            P   THSMPP K+E+FKSLE WA NN+L  LKPVEKCWQP DFLPDP      F +QV+ LRER   +PDDYFVVLVGDMITE+A+ TYQTM+NTLDG RDETGAS +PWAIW R+WTAEENR GDLL  +L LSGRV M  IE T+ YL  +G  P T+ +
Sbjct:   58 PVQITHSMPPHKIEIFKSLEGWAENNILTHLKPVEKCWQPADFLPDPNS--DGFHEQVKELRERAKEIPDDYFVVLVGDMITEEALSTYQTMLNTLDGTRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIERTIQYLIGSGMDPHTENS 217          

HSP 2 Score: 23.483 bits (49), Expect = 1.018e-57
Identity = 7/13 (53.85%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  660 PREQKKPYRGFVY 698
            P  +  PYRGF+Y
Sbjct:  212 PHTENSPYRGFIY 224          
BLAST of DY259954 vs. ExPASy Swiss-Prot
Match: STAD_SOLTU (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.731e-57
Identity = 113/198 (57.07%), Postives = 131/198 (66.16%), Query Frame = 2
Query:   92 PAACSPLVPNPAHHRLTAASSTVRFRQISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRPGDLLKSFLDLSGRVHMLLIENTVPYLNSAGWTPGTK 673
            P  CS           T    +V    +     PP+      THSMPPEK+EVF SL  WA  N+L  LKPVEKCWQP DFLPDP      F +QV+ LRER   +PDDYFVVL+GDMITE+A+PTYQTMINTLDGVRDETGA+ +PWAIW R+WTAEENR GDLL  +L LSGRV M  IE T+ YL  +G  P T+
Sbjct:   17 PFPCSSARSERVFMASTIHRPSVEVGSVKKAFTPPREVHVQVTHSMPPEKIEVFDSLRDWAAQNLLVHLKPVEKCWQPTDFLPDPAS--EGFDEQVKELRERCKEIPDDYFVVLIGDMITEEALPTYQTMINTLDGVRDETGATVTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPRTE 212          

HSP 2 Score: 23.0978 bits (48), Expect = 1.731e-57
Identity = 8/13 (61.54%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  660 PREQKKPYRGFVY 698
            PR +  PY GFVY
Sbjct:  209 PRTENNPYLGFVY 221          
BLAST of DY259954 vs. ExPASy Swiss-Prot
Match: STAD_CARTI (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Carthamus tinctorius PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.941e-57
Identity = 109/184 (59.24%), Postives = 132/184 (71.74%), Query Frame = 2
Query:  140 TAASSTVRFRQISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRPGDLLKSFLDLSGRVHMLLIENTVPYLNSAGWTPGTKKT 679
            T  SST +         PP+      THSMPP+K+E+FKS+E WA  N+L  LKPVEKCWQ QDFLPDP      F +QV+ LR R   +PDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS +PWA+W R+WTAEENR GDLL ++L LSGRV M  I+ T+ YL  +G  P T+ +
Sbjct:   36 TLGSSTPKVDNAKKPFQPPREVHVQVTHSMPPQKIEIFKSIEGWAEQNILVHLKPVEKCWQAQDFLPDPAS--EGFDEQVKELRARAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAVWTRAWTAEENRHGDLLHTYLYLSGRVDMRQIQKTIQYLIGSGMDPRTENS 217          

HSP 2 Score: 22.7126 bits (47), Expect = 2.941e-57
Identity = 7/13 (53.85%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  660 PREQKKPYRGFVY 698
            PR +  PY GF+Y
Sbjct:  212 PRTENSPYLGFIY 224          
BLAST of DY259954 vs. ExPASy Swiss-Prot
Match: STAD_ELAGV (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Elaeis guineensis var. tenera PE=2 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 8.498e-57
Identity = 103/158 (65.19%), Postives = 125/158 (79.11%), Query Frame = 2
Query:  206 THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRPGDLLKSFLDLSGRVHMLLIENTVPYLNSAGWTPGTKKT 679
            THSMPP+K+E+FKSLE WA NN+L  LKPVEKCWQPQDFLPDP+     F ++V+ LRER+  +PD Y+V LVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WA+W R+WTAEENR GDLL  +L LSGRV M  IE T+ YL  +G  P T+ +
Sbjct:   59 THSMPPQKIEIFKSLEDWAENNILVHLKPVEKCWQPQDFLPDPSS--EGFHEEVKELRERSKEIPDGYYVCLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAVWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPRTENS 214          

HSP 2 Score: 22.7126 bits (47), Expect = 8.498e-57
Identity = 7/13 (53.85%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  660 PREQKKPYRGFVY 698
            PR +  PY GF+Y
Sbjct:  209 PRTENSPYLGFIY 221          
BLAST of DY259954 vs. ExPASy Swiss-Prot
Match: STAD_BRANA (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.108e-56
Identity = 110/186 (59.14%), Postives = 132/186 (70.97%), Query Frame = 2
Query:  137 LTAASSTVRFRQISAVAAPPKPKT-------HSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRPGDLLKSFLDLSGRVHMLLIENTVPYLNSAGWTPGTK 673
            L ++S  +  +++ ++  P  P         HSMPP+K+E+FKS+E WA  N+L  LK VEK WQPQDFLPDP      F DQVR LRER   LPDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WAIW R+WTAEENR GDLL  +L LSGRV M  IE T+ YL  +G  P T+
Sbjct:   34 LASSSPALSSKEVESLKKPFTPPKEVHVQVLHSMPPQKIEIFKSMEDWAEQNLLTQLKDVEKSWQPQDFLPDPAS--DGFEDQVRELRERARELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTE 217          

HSP 2 Score: 22.7126 bits (47), Expect = 1.108e-56
Identity = 7/13 (53.85%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  660 PREQKKPYRGFVY 698
            PR +  PY GF+Y
Sbjct:  214 PRTENNPYLGFIY 226          
The following BLAST results are available for this feature:
BLAST of DY259954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
STAD_SIMCH2.483e-5959.41Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOLCO9.354e-5957.84Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_RICCO1.220e-5853.46Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOYBN2.072e-5860.87Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_CUCSA3.524e-5868.59Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_GOSHI1.018e-5766.05Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOLTU1.731e-5757.07Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_CARTI2.941e-5759.24Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_ELAGV8.498e-5765.19Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_BRANA1.108e-5659.14Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YM03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259954 ID=DY259954; Name=DY259954; organism=Citrus clementina; type=EST; length=975bp
CAAAATCAGTTCTAGAGAAAGACGCACACTCCCTGTGCTAAGTGCCACCA
CCATGCAAGCATCTCAGTTTCTCGTCACTTCCACCAAACGTCCTGCTGCG
TGCTCTCCACTTGTCCCTAATCCCGCCCACCATCGTCTCACCGCCGCATC
CTCCACCGTCCGATTCCGGCAAATCTCCGCCGTCGCAGCACCACCGAAAC
CAAAAACACATTCAATGCCACCCGAAAAAGTCGAAGTCTTCAAGTCACTA
GAAACCTGGGCCACCAATAACGTGTTACCATTACTCAAACCAGTAGAGAA
ATGCTGGCAGCCCCAAGACTTCTTACCCGATCCGACGCTGCCTTTTTCGG
ACTTCACTGACCAAGTCAGGGCCCTACGTGAACGCACTGCGGGGCTACCT
GACGATTACTTTGTTGTGCTGGTGGGTGACATGATCACTGAAGACGCCAT
TCCCACTTATCAGACGATGATTAATACGCTTGATGGTGTCAGAGATGAGA
CCGGTGCAAGTTCCAGCCCATGGGCTATTTGGAACCGCTCCTGGACTGCT
GAGGAAAACCGCCCTGGAGATTTGCTCAAGAGCTTCCTTGATTTGTCGGG
TCGGGTCCATATGCTCCTGATTGAGAACACTGTCCCGTATCTAAACAGTG
CTGGCTGGACCCCGGGAACAAAAAAAACCCTACCGCGGCTTTGTTTACCC
TCCTTAAAAAAACGCACCATTTAATACCCACCGCAAACCCCCCCCCCCCT
GGCACAACAAGGACACGAACCCAGCCTCCCCCCCAACACTAAACCCTTAA
TCCTACAAAAAATCACCCCCAAATATCCCTTCCCTAGTCCCTAACATTGC
TTCCTCACAAGCAAACCACAACCAAGACTGATACCTAACCAAAACAGGAA
AAAGCACCACCCGCAAACACCTACACAAAAAAACCAAATCACAAAACACA
CCAAGTATGTGCAAATTCCAACAAC
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