DY259957

Overview
NameDY259957
Unique NameDY259957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1082
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY259957_ssr1 microsatellite DY259957_ssr1:1..10. BLAST: Citrus ESTs to Populus V2 proteins
Homology
BLAST of DY259957 vs. ExPASy Swiss-Prot
Match: AB27B_ARATH (ABC transporter B family member 27 OS=Arabidopsis thaliana GN=ABCB27 PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.814e-65
Identity = 129/192 (67.19%), Postives = 161/192 (83.85%), Query Frame = 3
Query:  219 RAPLLDHGGRRKRNDASENGNVTDLEHGDAVPAANVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVAPLRKNLFSHLINQEIAFYDVTRTGDLPNQLSEDTPNIKNAATTNLSEALKNLSTAFIGLGF 794
            R PLL +   + + + SENG + DLEHG  V AANVGFGRV ALAKPDAGKL+I T+ALLI S +++L+PKFGG IIDIVS D +TPEQ+ E+L AVR+ ++ I LIV++GS+CTALRAWLF+SASERVVA LRK+LF HL++QEIAFYDVT+TG+L ++LSEDT  IKNAATTNLSEAL+N++TA IG+GF
Sbjct:   22 RDPLLQNQEDKPKANGSENG-LNDLEHG-VVEAANVGFGRVFALAKPDAGKLVIGTIALLIGSTTNLLVPKFGGMIIDIVSRDVKTPEQQTESLIAVRNAVVIILLIVVIGSICTALRAWLFNSASERVVARLRKDLFRHLMHQEIAFYDVTKTGELLSRLSEDTQIIKNAATTNLSEALRNVTTALIGVGF 211          
BLAST of DY259957 vs. ExPASy Swiss-Prot
Match: ABCB1_DICDI (ABC transporter B family member 1 OS=Dictyostelium discoideum GN=abcB1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 7.980e-21
Identity = 49/138 (35.51%), Postives = 91/138 (65.94%), Query Frame = 3
Query:  336 RVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVAPLRKNLFSHLINQEIAFYDVTRTGDLPNQLSEDTPNIKNAATTNLS 749
            R++ L++P+   ++ A VAL+ +S++S+ +P F G I+ +V+           +   + S+ L++ +I ++GS+ T +R+WLF  A ++ VA +R+NLFS ++NQEI ++D  RTG+L ++LS D+  I+N+ T N+S
Sbjct:  338 RLIQLSRPELPIILAAMVALVFSSLTSLAMPYFFGSIVQVVA--------TTHSFNNLNSSTLALVVIFVIGSISTLVRSWLFYLAGQKFVARIRRNLFSSIVNQEIGYFDQCRTGELLSRLSSDSQVIQNSVTVNIS 467          
BLAST of DY259957 vs. ExPASy Swiss-Prot
Match: ABCBA_MOUSE (ATP-binding cassette sub-family B member 10, mitochondrial OS=Mus musculus GN=Abcb10 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.379e-19
Identity = 53/152 (34.87%), Postives = 91/152 (59.87%), Query Frame = 3
Query:  336 RVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVAPLRKNLFSHLINQEIAFYDVTRTGDLPNQLSEDTPNIKNAATTNLSEALKNLSTAFIGLG 791
            ++L L +P+ G+L  A   L ++SV ++  P F G+IID++   T   E   ++L  + + +  +FL    G+    +R +L  S+ + +V  LR +LFS ++ QE+AF+D TRTG+L N+LS DT  +  + T NLS+ L+  + A +G+G
Sbjct:  124 KLLGLVRPERGRLSAAVGFLAVSSVITMSAPFFLGRIIDVIY--TNPSEGYGDSLTRLCAVLTCVFLC---GAAANGIRVYLMQSSGQSIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGVG 270          
BLAST of DY259957 vs. ExPASy Swiss-Prot
Match: ABCBA_HUMAN (ATP-binding cassette sub-family B member 10, mitochondrial OS=Homo sapiens GN=ABCB10 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.078e-17
Identity = 54/151 (35.76%), Postives = 90/151 (59.60%), Query Frame = 3
Query:  336 RVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVAPLRKNLFSHLINQEIAFYDVTRTGDLPNQLSEDTPNIKNAATTNLSEALKNLSTAFIGL 788
            ++L LA P+  +L  A   L ++SV S+  P F GKIID++   T      ++ L  +   + ++FL    G+   A+R +L  ++ +R+V  LR +LFS ++ QE+AF+D TRTG+L N+LS DT  +  + T NLS+ L+  + A +G+
Sbjct:  159 KLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIY--TNPTVDYSDNLTRLCLGLSAVFLC---GAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGI 304          
BLAST of DY259957 vs. ExPASy Swiss-Prot
Match: TAP2_RAT (Antigen peptide transporter 2 OS=Rattus norvegicus GN=Tap2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.105e-13
Identity = 47/144 (32.64%), Postives = 77/144 (53.47%), Query Frame = 3
Query:  336 RVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVAPLRKNLFSHLINQEIAFYDVTRTGDLPNQLSEDTPNIKNAATTNLSEALKNL 767
            R+L L+KPD   LI+A + L +A    + IP + G++IDI+ GD +          A  S I  + L  +  S+    R   F  A  R+   +R+ LFS L+ Q++AF+  T+TG+L ++LS DT  +    + N +  L++L
Sbjct:  140 RLLRLSKPDLPFLIVAFIFLAMAVWWEMFIPHYSGRVIDILGGDFDPD--------AFASAIFFMCLFSVGSSLSAGCRGGSFLFAESRINLRIREQLFSSLLRQDLAFFQETKTGELNSRLSSDTSLMSQWLSLNANILLRSL 275          
BLAST of DY259957 vs. ExPASy Swiss-Prot
Match: MDL1_YEAST (ATP-dependent permease MDL1, mitochondrial OS=Saccharomyces cerevisiae GN=MDL1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 3.590e-13
Identity = 44/156 (28.21%), Postives = 79/156 (50.64%), Query Frame = 3
Query:  336 RVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFL----IVIVGSVCTALRAWLFSSASERVVAPLRKNLFSHLINQEIAFYDVTRTGDLPNQLSEDTPNIKNAATTNLSEALKNLSTAFIGLG 791
            R+  L+KP++  + +A + +LI+S  S+ +P   GK++D+ S      E+ +++      T    F     + I+G+V  A R  +     ER+VA LR       ++Q+  F D  R GDL ++LS D   +  + T N+S+  + +   F+G G
Sbjct:   91 RLFVLSKPESKYIGLALLLILISSSVSMAVPSVIGKLLDLASESDGEDEEGSKSNKLYGFTKKQFFTALGAVFIIGAVANASRIIILKVTGERLVARLRTRTMKAALDQDATFLDTNRVGDLISRLSSDASIVAKSVTQNVSDGTRAIIQGFVGFG 246          
BLAST of DY259957 vs. ExPASy Swiss-Prot
Match: TAP2_HUMAN (Antigen peptide transporter 2 OS=Homo sapiens GN=TAP2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.689e-13
Identity = 45/144 (31.25%), Postives = 75/144 (52.08%), Query Frame = 3
Query:  336 RVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVAPLRKNLFSHLINQEIAFYDVTRTGDLPNQLSEDTPNIKNAATTNLSEALKNL 767
            R+L L++PD   L+ A   L++A +   LIP + G++IDI+ GD +          A  S I  + L     S+    R   F+    R+   +R+ LFS L+ Q++ F+  T+TG+L ++LS DT  + N    N +  L++L
Sbjct:  140 RLLKLSRPDLPLLVAAFFFLVLAVLGETLIPHYSGRVIDILGGDFDPH--------AFASAIFFMCLFSFGSSLSAGCRGGCFTYTMSRINLRIREQLFSSLLRQDLGFFQETKTGELNSRLSSDTTLMSNWLPLNANVLLRSL 275          
BLAST of DY259957 vs. ExPASy Swiss-Prot
Match: TAP2_MOUSE (Antigen peptide transporter 2 OS=Mus musculus GN=Tap2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.969e-12
Identity = 48/153 (31.37%), Postives = 77/153 (50.33%), Query Frame = 3
Query:  336 RVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVAPLRKNLFSHLINQEIAFYDVTRTGDLPNQLSEDTPNIKNAATTNLSEALKNLSTAFIGLGF 794
            R+L L++PD   LI A   L++A     LIP++ G++IDI+ GD +          A  S I  + L  +  S     R   F     R+   +R+ LFS L+ Q++ F+  T+TG+L ++LS DT  +      N +  L++L    +GL F
Sbjct:  139 RLLKLSRPDLPFLIAAFFFLVVAVWGETLIPRYSGRVIDILGGDFDPD--------AFASAIFFMCLFSVGSSFSAGCRGGSFLFTMSRINLRIREQLFSSLLRQDLGFFQETKTGELNSRLSSDTSLMSRWLPFNANILLRSL-VKVVGLYF 282          
BLAST of DY259957 vs. ExPASy Swiss-Prot
Match: ABCB9_RAT (ATP-binding cassette sub-family B member 9 OS=Rattus norvegicus GN=Abcb9 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.771e-12
Identity = 46/172 (26.74%), Postives = 89/172 (51.74%), Query Frame = 3
Query:  261 DASENGNVTDLEHGD----AVPAANVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVAPLRKNLFSHLINQEIAFYDVTRTGDLPNQLSEDTPNIKNAATTNLSEALKN 764
            +A E GN  +  HG+    A  A+     ++L+  KPD   L+ A+  L++A++    +P + G+ ID +           +++    + ++ + L+ I  S+   +R  +F+    R+   LR  LF  L++QE +F+D  RTGDL ++L+ DT  + +  + N++  L+N
Sbjct:  145 EALEPGN--EGFHGEGGAPAEQASGATLQKLLSYTKPDVAFLVAASFFLIVAALGETFLPYYTGRAIDSIVIQ--------KSMDQFTTAVVVVCLLAIGSSLAAGIRGGIFTLVFARLNIRLRNCLFRSLVSQETSFFDENRTGDLISRLTSDTTMVSDLVSQNINIFLRN 306          
BLAST of DY259957 vs. ExPASy Swiss-Prot
Match: ABCB9_MOUSE (ATP-binding cassette sub-family B member 9 OS=Mus musculus GN=Abcb9 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.771e-12
Identity = 46/172 (26.74%), Postives = 89/172 (51.74%), Query Frame = 3
Query:  261 DASENGNVTDLEHGD----AVPAANVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVAPLRKNLFSHLINQEIAFYDVTRTGDLPNQLSEDTPNIKNAATTNLSEALKN 764
            +A E GN  +  HG+    A  A+     ++L+  KPD   L+ A+  L++A++    +P + G+ ID +           +++    + ++ + L+ I  S+   +R  +F+    R+   LR  LF  L++QE +F+D  RTGDL ++L+ DT  + +  + N++  L+N
Sbjct:  145 EALEPGN--EGFHGEGGAPAEQASGATLQKLLSYTKPDVAFLVAASFFLIVAALGETFLPYYTGRAIDSIVIQ--------KSMDQFTTAVVVVCLLAIGSSLAAGIRGGIFTLVFARLNIRLRNCLFRSLVSQETSFFDENRTGDLISRLTSDTTMVSDLVSQNINIFLRN 306          
The following BLAST results are available for this feature:
BLAST of DY259957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
AB27B_ARATH1.814e-6567.19ABC transporter B family member 27 OS=Arabidopsis ... [more]
ABCB1_DICDI7.980e-2135.51ABC transporter B family member 1 OS=Dictyostelium... [more]
ABCBA_MOUSE4.379e-1934.87ATP-binding cassette sub-family B member 10, mitoc... [more]
ABCBA_HUMAN1.078e-1735.76ATP-binding cassette sub-family B member 10, mitoc... [more]
TAP2_RAT2.105e-1332.64Antigen peptide transporter 2 OS=Rattus norvegicus... [more]
MDL1_YEAST3.590e-1328.21ATP-dependent permease MDL1, mitochondrial OS=Sacc... [more]
TAP2_HUMAN4.689e-1331.25Antigen peptide transporter 2 OS=Homo sapiens GN=T... [more]
TAP2_MOUSE3.969e-1231.37Antigen peptide transporter 2 OS=Mus musculus GN=T... [more]
ABCB9_RAT6.771e-1226.74ATP-binding cassette sub-family B member 9 OS=Ratt... [more]
ABCB9_MOUSE6.771e-1226.74ATP-binding cassette sub-family B member 9 OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YM08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259957 ID=DY259957; Name=DY259957; organism=Citrus clementina; type=EST; length=1082bp
CACACACACACGCACGCACACGTTCTCTTGGAACTTATTGAAACTAAACA
TTGTACAAAAACATTACATCTTCCAATAAGTACTCATTTGAGCCGTGAAC
TTGTATAGTTTAGTGTTTTTACTTTGGTAGGAGGATTCACAAGTGAAATA
AGCTTTTGATGGGCAAGTTTTCAGGGATGCATGGCTTTGGTGGCGGCGGT
GGTGGCGGTGGCGGTGAAAGAGCCCCTTTGTTAGATCACGGTGGGAGGAG
GAAGAGAAATGATGCATCAGAAAATGGTAACGTGACCGACCTTGAGCATG
GGGATGCAGTTCCGGCTGCGAACGTGGGGTTTGGTAGAGTACTGGCACTT
GCAAAGCCTGATGCAGGGAAACTGATAATTGCTACAGTTGCTCTCTTGAT
TGCATCTGTGTCAAGTATATTGATTCCAAAATTTGGTGGGAAAATAATAG
ACATTGTGTCAGGAGATACTGAAACGCCTGAACAGAAGGCTGAAGCTTTA
GCTGCAGTCAGGAGCACCATCCTCAGTATCTTTCTGATTGTTATAGTCGG
TTCAGTTTGTACCGCACTACGAGCATGGTTATTTTCTTCTGCAAGTGAAA
GGGTTGTTGCTCCATTGAGAAAGAATTTGTTTAGTCACCTTATTAACCAA
GAAATAGCTTTCTATGATGTTACACGAACAGGGGACCTTCCTAACCAGCT
ATCTGAAGATACCCCGAATATAAAAAATGCTGCCACCACCAATCTCTCAG
AGGCACTTAAAAACCTATCAACTGCTTTTATTGGCCTTGGCTTTCCTGGT
TGCCACCTTCATGGAAGTTAACTTTGCCTGGCCCCTGGTTGGTTGGGGCC
GGCCCTTTCTCCTCCCGGACACTAATTTTTGGTCCTTTCCTTCCTGGAAC
TTTTCCCCCCCAAACCTCTGCCCGCCGCCTCGCACATTCTCTTCTCATTG
CCTGAAGGGAACCCTTTTGGCCCCCTCTACACACCTGCGCAATCTCTTCT
TCCTAAGGCAAACAAAGCAACATTCCCCGGCACGATCGCGCAAAAGGTGA
TAAGACAAATTCTAACACCCTTCGCCCCTCCC
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