DY259971

Overview
NameDY259971
Unique NameDY259971
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length920
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1377 contig Ccv1_Contig1377:1..920. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 8.593e-79
Identity = 142/182 (78.02%), Postives = 151/182 (82.97%), Query Frame = 2 
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQKD+NWPL                   ADKA GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+GD+LW+ARYILERITEIAGVVLSFDPKPIKGDWNGAGAH NYSTK+MRNDGG +VI  AIEKLGKR  EHIAAYGEGNERRLTGRHE ADINTF WGV+
Sbjct:  128 IEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMRNDGGYEVIKSAIEKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVA 309
[Close]
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA1_MEDSA (Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.500e-78
Identity = 142/182 (78.02%), Postives = 151/182 (82.97%), Query Frame = 2 
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQKDINWPL                   ADKA GRDIV+SHYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+GD++W+ARYILERITE+AGVVLSFDPKPIKGDWNGAGAH NYSTKSMR DGG +VI KAIEKLGK+  EHIAAYGEGNERRLTGRHE ADINTF WGV+
Sbjct:  128 IEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEVAGVVLSFDPKPIKGDWNGAGAHTNYSTKSMREDGGYEVILKAIEKLGKKHKEHIAAYGEGNERRLTGRHETADINTFLWGVA 309
[Close]
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA1_PEA (Glutamine synthetase nodule isozyme OS=Pisum sativum GN=GS1 PE=2 SV=2)

HSP 1 Score: 289.271 bits (739), Expect = 2.116e-77
Identity = 137/182 (75.27%), Postives = 151/182 (82.97%), Query Frame = 2 
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQKDINWPL                   ADKA GRD+V +HYKACL+AGINISGINGEVMPGQWEFQVGP VGIS+GD++W+ARYILERITE+AGVVL+FDPKPIKGDWNGAGAH NYSTKSMR DGG ++I KAIEKLGKR  EHI+AYGEGNERRLTG+HE ADINTFSWGV+
Sbjct:  127 IEQEYTLLQKDINWPLGWPAGGYPGPQGPYYCSVGADKAFGRDVVEAHYKACLFAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEVAGVVLTFDPKPIKGDWNGAGAHTNYSTKSMREDGGYEIIKKAIEKLGKRLPEHISAYGEGNERRLTGKHETADINTFSWGVA 308
[Close]
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLN11_ORYSJ (Glutamine synthetase cytosolic isozyme 1-1 OS=Oryza sativa subsp. japonica GN=GLN1-1 PE=1 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.372e-76
Identity = 139/182 (76.37%), Postives = 149/182 (81.87%), Query Frame = 2 
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQKDINWPL                   ADK+ GRDIV+SHYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+GDQ+W+ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMRNDGG ++I  AIEKL  R  EHI+AYGEGNERRLTGRHE ADINTFSWGV+
Sbjct:  128 IEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGIGADKSFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDQVWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMRNDGGYEIIKSAIEKLKLRHKEHISAYGEGNERRLTGRHETADINTFSWGVA 309
[Close]
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA1_PHAVU (Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.792e-76
Identity = 136/182 (74.73%), Postives = 150/182 (82.42%), Query Frame = 2 
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQK++NWP+                   ADKA GRDIV++HYKAC+YAGINISGINGEVMPGQWEFQVGP VGIS+GD+LW+ARYILERITE+AGVVLSFDPKPIKGDWNGAGAH NYSTK+MRNDGG + I  AI+KLGKR  EHIAAYGEGNERRLTGRHE ADINTF WGV+
Sbjct:  128 IEQEYTLLQKEVNWPVGWPVGGFPGPQGPYYCGVGADKAFGRDIVDAHYKACVYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEVAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMRNDGGYEEIKSAIQKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVA 309
[Close]
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA_LUPLU (Glutamine synthetase nodule isozyme OS=Lupinus luteus PE=3 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 2.340e-76
Identity = 139/182 (76.37%), Postives = 149/182 (81.87%), Query Frame = 2 
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQKDI+WP+                   A+KA GRDIV+SHYKACLYAGINISGIN EVMPGQWEFQVGP VGIS+GD+LW+ARYILERITEIAGVVLS DPKPI GDWNGAGAH NYSTKSMRNDGG +VI KAIEKLGKR  EHIAAYGEGNERRLTGRHE ADI+TF WGV+
Sbjct:  128 IEQEYTLLQKDIHWPIGWPLGGFPGPQGPYYCGTGAEKAFGRDIVDSHYKACLYAGINISGINAEVMPGQWEFQVGPSVGISAGDELWVARYILERITEIAGVVLSLDPKPIPGDWNGAGAHTNYSTKSMRNDGGYEVIKKAIEKLGKRHNEHIAAYGEGNERRLTGRHETADISTFFWGVA 309
[Close]
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 3.991e-76
Identity = 137/182 (75.27%), Postives = 148/182 (81.32%), Query Frame = 2 
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQ  + WP+                   ADKA GRDIV+SHYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+GD+LW+ARYILERITEIAGVV+SFDPKPI+GDWNGAGAH NYSTKSMRNDGG ++I KAIEKLG R  EHIAAYGEGNERRLTGRHE ADINTF WGV+
Sbjct:  128 IEQEYTLLQNSVKWPIGWPVGGYPGPQGPYYCGIGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVVSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVA 309
[Close]
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 3.991e-76
Identity = 137/182 (75.27%), Postives = 150/182 (82.42%), Query Frame = 2 
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQK++ WP+                   ADKA GRDIV++HYKACLYAGINISGINGEVMPGQWE+QVGP VGIS+GD+LW++RYILERITEIAGVVLSFDPKPI+GDWNGAGAH NYSTKSMRNDGG +VI KAIEKLG R  EHIAAYGEGNERRLTGRHE ADINTF WGV+
Sbjct:  128 IEQEYTLLQKEVKWPIGWPVGGFPGPQGPYYCGIGADKAWGRDIVDAHYKACLYAGINISGINGEVMPGQWEYQVGPSVGISAGDELWVSRYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGFEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVA 309
[Close]
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 285.034 bits (728), Expect = 3.991e-76
Identity = 136/182 (74.73%), Postives = 150/182 (82.42%), Query Frame = 2 
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQK++NWP+                   ADKA GRDIV++HYKACLYAG+NISGINGEVMPGQWEFQVGP VGIS+GD++W+ARYILERITEIAGVVLSFDPKPIKGDWNGAGAH NYSTK+MR DGG +VI KAI+KLG R  EHIAAYGEGNERRLTGRHE ADINTF WGV+
Sbjct:  128 IEQEYTLLQKEVNWPVGWPIGGFPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGVNISGINGEVMPGQWEFQVGPSVGISAGDEVWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMREDGGYEVIKKAIDKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVA 309
[Close]
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 8.892e-76
Identity = 137/182 (75.27%), Postives = 147/182 (80.77%), Query Frame = 2 
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQKD NWPL                   ADKA GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+GD++W ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR DGG ++I KAIEKLG R  EHIAAYGEGNERRLTG+HE  DINTFSWGV+
Sbjct:  128 IEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGADKAYGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETTDINTFSWGVA 309
The following BLAST results are available for this feature:
BLAST of DY259971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA_VIGAC8.593e-7978.02Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA1_MEDSA2.500e-7878.02Glutamine synthetase cytosolic isozyme OS=Medicago... [more]
GLNA1_PEA2.116e-7775.27Glutamine synthetase nodule isozyme OS=Pisum sativ... [more]
GLN11_ORYSJ1.372e-7676.37Glutamine synthetase cytosolic isozyme 1-1 OS=Oryz... [more]
GLNA1_PHAVU1.792e-7674.73Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE... [more]
GLNA_LUPLU2.340e-7676.37Glutamine synthetase nodule isozyme OS=Lupinus lut... [more]
GLNA2_VITVI3.991e-7675.27Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLNA1_VITVI3.991e-7675.27Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLNA1_LOTJA3.991e-7674.73Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA3_MEDSA8.892e-7675.27Glutamine synthetase nodule isozyme OS=Medicago sa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YM23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259971 ID=DY259971; Name=DY259971; organism=Citrus clementina; type=EST; length=920bp
CATTGAGCCCCTCTACACTCTTCTTCAAAAAGACATAAACTGGCCCTTGG
GGTGGCCAGTTGGCGGCTATCCTGGCCCTCAGGGACCTTACTACTGCGGT
GTTGGCGCTGATAAGGCTTTAGGCCGAGACATTGTGAATTCTCACTACAA
AGCTTGCCTTTACGCTGGAATTAACATCAGTGGCATTAACGGTGAAGTTA
TGCCGGGTCAGTGGGAATTCCAAGTGGGTCCCTGTGTGGGTATCTCTTCT
GGTGATCAGTTATGGATGGCTCGGTACATACTCGAGAGGATTACTGAAAT
TGCCGGAGTTGTTCTTTCATTTGATCCAAAACCAATCAAGGGTGACTGGA
ATGGTGCTGGTGCACACGCCAACTACAGCACCAAGTCTATGAGGAATGAT
GGTGGAATTGATGTGATCAACAAGGCAATTGAAAAGTTGGGGAAACGCCC
CGGGGAACACATTGCTGCTTATGGAGAGGGCAACGAAAGAAGACTGACTG
GTCGACATGAAATTGCAGATATCAACACTTTCTCTTGGGGTGTTTCCTAA
TAAAGGTGCCTCCATTCACGTTTGGCCTTGACACCGCCAAAGATGGAAAA
GGAATACTCTTTAAGAACAACGGCCCCCCTTATACACAAACCCATTTGCT
GTGAATTTCTATAATCCTTAACACCTTCTTACTGCGGTACCCATTACATA
AAACGGTGATCTGTTACAAAGATACAAAAACACAGTAAATGGTAACTCTC
TATATCACCCCACTCACTAACAGATCCCACGTCTCCAACTATAACCGAAT
CCTTACGCAAATGCTACAATTAAATTCACTACGTTTAATTTTATATCTCC
TATCTTATCACTATTACCTAACTTACCCCTCCTCGTCCTCCAATCCCCAA
ACCTATTTACCCCTTCCCGG
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