DY259975

Overview
NameDY259975
Unique NameDY259975
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1096
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14866 contig Ccv1_Contig14866:1..1091. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259975 vs. ExPASy Swiss-Prot
Match: RLA2B_MAIZE (60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.620e-19
Identity = 47/62 (75.81%), Postives = 58/62 (93.55%), Query Frame = 2
Query:   74 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 259
            MKVIAAYLLAVLGGN  P+ADD+K+IL SVGAEAD+E++EFLL+E+K KDITE+IA+GRE+L
Sbjct:    1 MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRERL 62          
BLAST of DY259975 vs. ExPASy Swiss-Prot
Match: RLA2_PARAR (60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.469e-19
Identity = 47/62 (75.81%), Postives = 57/62 (91.94%), Query Frame = 2
Query:   74 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 259
            MKVIAA+LLA+LGGN  P+ +DLK+IL SVGA+ADD++IE LLS+VKGKDITELIASGRE+L
Sbjct:    1 MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRERL 62          
BLAST of DY259975 vs. ExPASy Swiss-Prot
Match: RLA24_ARATH (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana GN=RPP2D PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.453e-18
Identity = 46/62 (74.19%), Postives = 53/62 (85.48%), Query Frame = 2
Query:   74 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 259
            MKV AA+LLAVLGGNA PSAD++K+I+G+VGA+ D E IE LL EV GKDI ELIASGREKL
Sbjct:    1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKL 62          
BLAST of DY259975 vs. ExPASy Swiss-Prot
Match: RLA2A_MAIZE (60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.101e-17
Identity = 53/111 (47.75%), Postives = 60/111 (54.05%), Query Frame = 2
Query:   74 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLF 406
            MK +AAYLLAVL GNA PSADDL  IL SVG E D+E++E LLS++ GKDITELIA+GREK                                         DDDMGFSLF
Sbjct:    1 MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGREKFASVPCGGGGVAVAAAAPAAGGAAPAAEAKKEEKVEEKEESDDDMGFSLF 111          
BLAST of DY259975 vs. ExPASy Swiss-Prot
Match: RLA22_ARATH (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.203e-17
Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = 2
Query:   74 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 259
            MKV+AAYLLAVL G A P++ D+K ILGSVGAE +D +IE LL EVKGKD+ ELIA+GREKL
Sbjct:    1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKL 62          
BLAST of DY259975 vs. ExPASy Swiss-Prot
Match: RLA21_ARATH (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 7.135e-17
Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 2
Query:   74 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 259
            MKV+AA+LLAVL G A P+  D+K+ILGSVGAE +D +IE LL EVKGKD+ ELIA+GREKL
Sbjct:    1 MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKL 62          
BLAST of DY259975 vs. ExPASy Swiss-Prot
Match: RLA2_BRAFL (60S acidic ribosomal protein P2 OS=Branchiostoma floridae PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.346e-15
Identity = 40/62 (64.52%), Postives = 52/62 (83.87%), Query Frame = 2
Query:   74 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 259
            M+ +AAYLLAVLGGNA PSA D+K ILGSVG +A+DER+  ++ E+KGKDI E++A+GR KL
Sbjct:    1 MRYVAAYLLAVLGGNANPSAGDIKKILGSVGIDAEDERLNKVIGELKGKDIEEVMAAGRGKL 62          
BLAST of DY259975 vs. ExPASy Swiss-Prot
Match: RLA23_ARATH (60S acidic ribosomal protein P2-3 OS=Arabidopsis thaliana GN=RPP2C PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.329e-14
Identity = 39/62 (62.90%), Postives = 50/62 (80.65%), Query Frame = 2
Query:   74 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 259
            MKVIAA+LLA LGGN  P+++DLK IL SVGAE D+ +I+ L S +K  D+TELIA+GREK+
Sbjct:    1 MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGREKM 62          
BLAST of DY259975 vs. ExPASy Swiss-Prot
Match: RLA2_ALTAL (60S acidic ribosomal protein P2 OS=Alternaria alternata GN=ALTA5 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.383e-14
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 2
Query:   74 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 259
            MK +AAYLL  LGGN  PSA D+K +L SVG EAD +R++ L+SE++GKDI ELIASG EKL
Sbjct:    1 MKHLAAYLLLGLGGNTSPSAADVKAVLESVGIEADSDRLDKLISELEGKDINELIASGSEKL 62          
BLAST of DY259975 vs. ExPASy Swiss-Prot
Match: RLA2_CLAHE (60S acidic ribosomal protein P2 OS=Cladosporium herbarum GN=CLAH5 PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 1.259e-13
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 2
Query:   74 MKVIAAYLLAVLGGNAKPSADDLKNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 259
            MK +AA+LL  L GN+ PSA+D+K +L SVG +AD+ER+  LL E++GKDI ELI+SG EKL
Sbjct:    1 MKYLAAFLLLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSEKL 62          
The following BLAST results are available for this feature:
BLAST of DY259975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RLA2B_MAIZE2.620e-1975.8160S acidic ribosomal protein P2B OS=Zea mays GN=RP... [more]
RLA2_PARAR4.469e-1975.8160S acidic ribosomal protein P2 OS=Parthenium arge... [more]
RLA24_ARATH6.453e-1874.1960S acidic ribosomal protein P2-4 OS=Arabidopsis t... [more]
RLA2A_MAIZE1.101e-1747.7560S acidic ribosomal protein P2A OS=Zea mays GN=RP... [more]
RLA22_ARATH3.203e-1770.9760S acidic ribosomal protein P2-2 OS=Arabidopsis t... [more]
RLA21_ARATH7.135e-1769.3560S acidic ribosomal protein P2-1 OS=Arabidopsis t... [more]
RLA2_BRAFL1.346e-1564.5260S acidic ribosomal protein P2 OS=Branchiostoma f... [more]
RLA23_ARATH4.329e-1462.9060S acidic ribosomal protein P2-3 OS=Arabidopsis t... [more]
RLA2_ALTAL7.383e-1464.5260S acidic ribosomal protein P2 OS=Alternaria alte... [more]
RLA2_CLAHE1.259e-1359.6860S acidic ribosomal protein P2 OS=Cladosporium he... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259975 ID=DY259975; Name=DY259975; organism=Citrus clementina; type=EST; length=1096bp
GTAACTCTCACACTTTCTTGTTGTTGAAAAAGTCGATCTTTATCGTCTCA
CCTCTCTGCTATAAGCAACAGAAATGAAGGTGATCGCTGCTTACTTGCTC
GCCGTTTTGGGTGGCAACGCCAAACCATCGGCCGATGACTTGAAGAACAT
TCTTGGATCAGTTGGAGCTGAAGCTGATGATGAGAGAATAGAGTTTCTCT
TGTCAGAAGTCAAGGGCAAGGATATTACCGAGCTAATTGCATCCGGAAGG
GAGAAGTTGGCATCAGTGCCATCAGGTGGTGGTGTTGCTGTTGCTGCATC
AGCACCTGCTGCAGGTGGTGCTGCTGCTCCTGCCGCTGAGGCTAAGAAAG
AGGAGAAGGTCGAGGAGAAGGAAGAATCTGATGATGACATGGGTTTCAGC
CTTTTCCACTAAGCTCTCAATGTTGCTTTTTCCGTATGAAGGATTATTAT
ATTTGGTCATTAGTGTTTTTATTTGAATGTTACAAGTTTTTGGTTTGTAG
TTGGATATGGTTTTCCCCATTTTTAGAGATTGTTTGAACTCCCGCAAATT
TTGTTTACTTAAATGAGGTGGAAAATCTCATTTTCGCTCCAGATTCATTT
TTATTAATCCTAAAATCCTCAGGTCCCATCCCCTGTCCGTCACCCTCACC
CAAAACCACAACAGCCAAACTTTTCTCGCCCAAGCTCAGCACCCCAAACA
AAACTTGGTTATCTTTTTCCTCCTCCTGCACACGGTCATCTCCACCAAAT
AACAACACCTCACCCCCCCACCTCCGCGCATCCCTCCCTTGTGCCTGGTA
CAACACGCCTCTCCGCATTGTCCGTGCCACTATGGGTGCCCTTTTACGCC
CTTTTCATCTCTTCTACCCCACTCTCTTCAGAACTTTAACATTCTCCCTC
TTCTCTCTACTCTCCACTCCATTCTTCTATTCTCTATCCTCCACCCCCCC
TCTAACGCTTCTTCAACGACTCCTCTACCTCGACCACACTCCAGTCACCC
CTTCCCCCCCCCCGTGTCCCTCATGCCTCACCTCCTCAGGTCCCTCCCTG
CCCCCGCCCCCCCCCACATGCCCCCACCAAGTCCCCTCCCCACCTC
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