DY259980

Overview
NameDY259980
Unique NameDY259980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length957
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1381 contig Ccv1_Contig1381:1..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259980 vs. ExPASy Swiss-Prot
Match: MUB6_ARATH (Membrane-anchored ubiquitin-fold protein 6 OS=Arabidopsis thaliana GN=MUB6 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.513e-38
Identity = 82/119 (68.91%), Postives = 100/119 (84.03%), Query Frame = 3
Query:  249 MAGE-DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGEKLLSD-SSKSRCLCSIL 599
            MAGE D IELKFRLADG DIGPSK++ + TV+SLKEK+IS+WPK+KEN PKTVN+++LI+AGKILE+N T+AESRLPV ELPG  ITMH+VLR    DKK EKL +D   K+RC+C+IL
Sbjct:    1 MAGEEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLINAGKILENNRTLAESRLPVCELPGMIITMHIVLRLPTLDKKSEKLQNDPPMKNRCVCTIL 119          
BLAST of DY259980 vs. ExPASy Swiss-Prot
Match: MUB5_ARATH (Membrane-anchored ubiquitin-fold protein 5 OS=Arabidopsis thaliana GN=MUB5 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 8.099e-35
Identity = 77/120 (64.17%), Postives = 93/120 (77.50%), Query Frame = 3
Query:  249 MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESR--LPVVELPGTAITMHVVLRPSLPDKKGEKLLSD-SSKSRCLCSIL 599
            M  EDLIELKFRLADG DIGPSK+S   TVASLKEKII++WPK+KEN PK +N V+LI+ GKILE+N T++E+R  + + ELPG   TMHVVLRP L +KK EKL +D   KS C+C IL
Sbjct:    1 MGDEDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLINGGKILENNKTLSEARSLITIGELPGIVTTMHVVLRPPLFEKKKEKLQNDPPRKSHCVCCIL 120          
BLAST of DY259980 vs. ExPASy Swiss-Prot
Match: MUB3_ORYSJ (Membrane-anchored ubiquitin-fold protein 3 OS=Oryza sativa subsp. japonica GN=MUB3 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 8.099e-35
Identity = 72/116 (62.07%), Postives = 97/116 (83.62%), Query Frame = 3
Query:  255 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGEKLLSDSSK-SRCLCSIL 599
            G++ IE+KFRL DG DIGPSK+ P+TTV++LKE I++RWP++KE  PKTVN+++LI+AG+ILE+N T+AESR+PV E+PG  ITMHVV+RP  PDK  EK L++S K +RC C+IL
Sbjct:    4 GKEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLINAGRILENNRTLAESRVPVGEVPGGVITMHVVVRPPQPDKNSEKQLANSPKQNRCGCTIL 119          
BLAST of DY259980 vs. ExPASy Swiss-Prot
Match: MUB1_ARATH (Membrane-anchored ubiquitin-fold protein 1 OS=Arabidopsis thaliana GN=MUB1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.385e-26
Identity = 55/111 (49.55%), Postives = 80/111 (72.07%), Query Frame = 3
Query:  267 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGEKLLSDSSKSRCLCSIL 599
            +E+KFRL DG+DIGP  F   TTV++LKE +IS WP+EKENGPKTV  V+LI AGK+LE++ T+ + R PV  L G   TMHV+++  + +K+ +K   D   ++C+CS++
Sbjct:    8 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEKE-KKPKGDPKMNKCVCSVM 117          
BLAST of DY259980 vs. ExPASy Swiss-Prot
Match: MUB1_ORYSJ (Membrane-anchored ubiquitin-fold protein 1 OS=Oryza sativa subsp. japonica GN=MUB1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.362e-26
Identity = 56/115 (48.70%), Postives = 84/115 (73.04%), Query Frame = 3
Query:  258 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGEKLLSDSSKS-RCLCSIL 599
            ++  E+KFRL DG DIGP ++   +TVA+LKE I+++WPK+KE GP+TVN+++LI+AGKILE+N T++E + P+ +  G   TMHVV+R    DK+  K+++   K  RC CSI+
Sbjct:    6 QEQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLINAGKILENNKTLSECKSPICDFSGLT-TMHVVVRAPTSDKQSNKIVAKKPKDFRCGCSIM 119          
BLAST of DY259980 vs. ExPASy Swiss-Prot
Match: MUB4_ARATH (Membrane-anchored ubiquitin-fold protein 4 OS=Arabidopsis thaliana GN=MUB4 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.872e-26
Identity = 60/121 (49.59%), Postives = 88/121 (72.73%), Query Frame = 3
Query:  249 MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPS----LPDKKGEKLLSDSSKSRCLCSIL 599
            M  EDL+ELKFRL DG+D+GP ++SPT TV+ LKE+I+S WPK+K+  PK+ ++++LI+AGKILE+  T+A+ + P  +LP + ITMHVV++ S     P+KK EK      +S C C+I+
Sbjct:    1 MPEEDLVELKFRLYDGSDVGPFQYSPTATVSMLKERIVSEWPKDKKIVPKSASDIKLINAGKILENGKTVAQCKAPFDDLPKSVITMHVVVQLSPTKARPEKKIEK-EEAPQRSFCSCTIM 120          
BLAST of DY259980 vs. ExPASy Swiss-Prot
Match: MUB2_ARATH (Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis thaliana GN=MUB2 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.975e-26
Identity = 54/113 (47.79%), Postives = 81/113 (71.68%), Query Frame = 3
Query:  258 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSL--PDKKGEKLLSDSSKSRCLC 590
            +D +E+KFRL DG+DIGP  F   TTVA+LKE ++++WP++KENGPKTV +V+LI AG+ILE+N T+ + R PV    G   TMHV+++  +   +KK +K   D  +++C+C
Sbjct:    5 KDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLISAGRILENNKTVGDCRSPVGNFSGAVTTMHVIIQHQVTEKEKKKKKPKGDLKQNKCVC 117          
BLAST of DY259980 vs. ExPASy Swiss-Prot
Match: MUB4_ORYSJ (Membrane-anchored ubiquitin-fold protein 4 OS=Oryza sativa subsp. japonica GN=MUB4 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.771e-24
Identity = 60/119 (50.42%), Postives = 84/119 (70.59%), Query Frame = 3
Query:  258 EDLIELKFRLADGADIGPSKFSPT-TTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRP----SLPDKKGEKLLSDSSKSRCLCSIL 599
            ++ +E+KFRL DG+DIGP + +   TTVA+LK+++++ WPK+K   PKT N+V+LI  GKILE++  IA+ R P  +LP TAITMHVV++P    S PDKK  KL      +RC C+IL
Sbjct:   20 DEEVEVKFRLFDGSDIGPLRCNAVATTVAALKDRVVADWPKDKTIVPKTANDVKLISGGKILENDKNIAQCRAPFGDLPSTAITMHVVVQPSSAKSKPDKKTNKL---PKTTRCSCTIL 135          
BLAST of DY259980 vs. ExPASy Swiss-Prot
Match: MUB3_ARATH (Membrane-anchored ubiquitin-fold protein 3 OS=Arabidopsis thaliana GN=MUB3 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.169e-23
Identity = 54/118 (45.76%), Postives = 80/118 (67.80%), Query Frame = 3
Query:  249 MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGEKLLSDSSKS-RCLCSIL 599
            M  E+ I++KFRL DG+DIGP ++S  +TV  LK++++S WPK K   PK +N V+LI +GKILE+N T+ + + P  ++ G  I MHVV++PSL   K EK +  + K+  C C+IL
Sbjct:    1 MPEEESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISSGKILENNKTVGQCKTPFGDIAGGVIVMHVVVQPSLAKSKTEKKVDKAPKAVICTCTIL 118          
BLAST of DY259980 vs. ExPASy Swiss-Prot
Match: MUB2_ORYSJ (Membrane-anchored ubiquitin-fold protein 2 OS=Oryza sativa subsp. japonica GN=MUB2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.213e-22
Identity = 55/117 (47.01%), Postives = 80/117 (68.38%), Query Frame = 3
Query:  255 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGEKLLSDSSKSR--CLCSIL 599
            G + +E++FRL DG+DIGPS     TTV +LKE +++RWP+ KE  P+TVN+V +I+AG++LE+N T+AESR    E P   ITMHVV+R S P+++ ++        R  C C+IL
Sbjct:   10 GMEAVEVRFRLDDGSDIGPSMHDQATTVTALKEFVLARWPQGKEIAPRTVNDVTIINAGQVLENNRTLAESRNLAAESPEGPITMHVVVRRSRPERRVKQPPKARPPERIGCGCTIL 126          
The following BLAST results are available for this feature:
BLAST of DY259980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
MUB6_ARATH3.513e-3868.91Membrane-anchored ubiquitin-fold protein 6 OS=Arab... [more]
MUB5_ARATH8.099e-3564.17Membrane-anchored ubiquitin-fold protein 5 OS=Arab... [more]
MUB3_ORYSJ8.099e-3562.07Membrane-anchored ubiquitin-fold protein 3 OS=Oryz... [more]
MUB1_ARATH1.385e-2649.55Membrane-anchored ubiquitin-fold protein 1 OS=Arab... [more]
MUB1_ORYSJ2.362e-2648.70Membrane-anchored ubiquitin-fold protein 1 OS=Oryz... [more]
MUB4_ARATH6.872e-2649.59Membrane-anchored ubiquitin-fold protein 4 OS=Arab... [more]
MUB2_ARATH8.975e-2647.79Membrane-anchored ubiquitin-fold protein 2 OS=Arab... [more]
MUB4_ORYSJ3.771e-2450.42Membrane-anchored ubiquitin-fold protein 4 OS=Oryz... [more]
MUB3_ARATH4.169e-2345.76Membrane-anchored ubiquitin-fold protein 3 OS=Arab... [more]
MUB2_ORYSJ1.213e-2247.01Membrane-anchored ubiquitin-fold protein 2 OS=Oryz... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YN09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259980 ID=DY259980; Name=DY259980; organism=Citrus clementina; type=EST; length=957bp
CGTCCAGCTTAGCTGATTCTTGAATGAGCATAGCGTCTCTTTCATGCTCT
GTTATCGTCTTCAATCAACGGTTAATACACTTCTTTTTCTTTTTTCCTGG
TAAATATTAATGAAATCTGATCTGGGTTCTTGATATTTTCTAGTTTAGTA
CTGTTTTTCATTGATGAAAGTGAATCTTGATTCTCTGAAGAATTTACTGT
CTGTTATGAGAAGTTGAGGTGGGGTTCTGATAAGGGATTGAATCATCAAT
GGCTGGAGAAGATTTGATAGAGCTGAAGTTCAGGCTTGCTGACGGCGCAG
ACATAGGTCCAAGCAAGTTTAGTCCAACGACCACTGTTGCATCTTTGAAA
GAGAAAATAATCTCACGATGGCCAAAAGAAAAAGAAAATGGTCCCAAGAC
GGTAAACAATGTGCAACTCATTCACGCTGGAAAGATACTAGAGGACAACA
TGACAATTGCAGAGTCTAGACTCCCAGTTGTTGAACTTCCAGGAACTGCC
ATCACTATGCATGTTGTTCTGCGTCCTTCTTTACCTGACAAAAAAGGCGA
AAAACTGCTGAGTGATTCTTCCAAGTCCAGGTGTTTGTGCTCAATCTTGT
AGCTGCCAGTGACATGATTGTTCAAGCTTTCCGGTTGGTGTTGGCGTTCT
TCCATATTCATTTAAATTGGCCCCAAAATGGCGTTCCTAAATGTTGTAAT
TGAGGAAATCTTTCTTTCAAGAAACTCCGAAACAAAAACCTTGAAGGTCC
CTGCCAAGATGTTACCCTGGCCTAATCCCCGGGCCTGCCCCGTTGAAACA
ACTAATTGCCTTGGGAAAAAGGGGAAAGGAAAAGCAAGGAACCTATTGCC
GTTTAATGCTCCAAAAGGAATTTCTCCAGCCCCCAAAAATTCCATTTAAA
AAATAAAACAGGAATATATAAAACATTCCAACCTTCAATACCTTCTCCTC
GACTACA
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