DY259982

Overview
NameDY259982
Unique NameDY259982
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1052
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY259982_ssr919 microsatellite DY259982_ssr919:919..933. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1383 contig Ccv1_Contig1383:1..1052. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY259982 vs. ExPASy Swiss-Prot
Match: PP445_ARATH (Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 7.392e-24
Identity = 63/132 (47.73%), Postives = 83/132 (62.88%), Query Frame = 3 
Query:  354 LDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVN-DSGSEFSLKLSVKGYNTLLMQLSKFPLVDQTKPVNWEMFDHTAAAQSPYLKNQ*SHGYC 746
            LDL+P+TAL+FS+WISQ P +KHSV SY+SLL LLI N +     KI  LM+KSC    + L+VLD  R++N D   E   KL +  YNTLL  L++F LVD+ K V  EM +      + Y  N+  +GYC
Sbjct:   99 LDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLE-DKVCPNIYTYNKMVNGYC 229
The following BLAST results are available for this feature:
BLAST of DY259982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP445_ARATH7.392e-2447.73Pentatricopeptide repeat-containing protein At5g65... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YN12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259982 ID=DY259982; Name=DY259982; organism=Citrus clementina; type=EST; length=1052bp
CTCTTCTTTCCTCCTTGAAACCAGTGAAGTGTGTCAGTCTCCCACGTTTC
TTTCCTTTCACATTCATGAACCGAACCGTCATTCCCGCCCCCGTCTGGAA
ATGAGTAATCGGACGCCGGCCGCCATTTTTACCGCCTTCACCAAAAGCCC
AGGTCAGTTTCTCATTAAATATTCCTTCTGCACATCATCATCAATCTCCT
CCCTCCCACTTCCCCTAGACCCGGACCCACCGGATCTCCCCTCTCAAATC
TTCACCATCCTCTCAACTCACCCCACAACGTGGCAACGACACCCCTCGAT
CACAAAATTAATCCCTCTCTTGTCCCCTTCTCACATTTCCTCTCTCTTCT
CCCCTCGACCTCAATCCCCAAACTGCCCTCGATTTCTCCTATTGGATTTC
CCAAAAACCCGGGTTCAAACACTCCGTTGAATCCTACTCCTCTTTGTTAA
ATCTCTTAATCCGTAACAATTTCACCAAGGCGAGTGAAAAAATTGTCTTT
TTGATGCTTAAATCTTGTAGTTTGGATAAAGAAATTCTTTTCGTGTTAGA
TTTTCTGAGGAGAGTGAATGACAGTGGTAGTGAGTTTAGTTTGAAGCTTA
GTGTTAAGGGTTATAACACATTGTTAATGCAACTGTCGAAATTTCCTTTG
GTTGACCAGACGAAGCCCGTGAATTGGGAAATGTTCGATCATACGGCTGC
TGCCCAAAGTCCCTACCTTAAAAACCAATGATCACACGGGTATTGTACCG
GAAGGCCATAGCCATCCACACCTATCCTCTCCTACACCCCAAACCGGCCC
CTCCCCCCCTCTCAGCCCCCGCCCACCTCACCCCACCCCACCACTATTTC
TCACACCCTCGTCACCTCACACTCCAGGCAAGAACACCACCACGACGACA
TATCACACACCAAGCACACCACCCCACCCCACCACGACAAAACAAACTCC
CACACGCACTCTGGTCACCACCACACTATATACCCATCCCCTTCTTCGCC
ATTTCACCCCTCCCTTCCCCCACCCCATCCCCAACAACCACCACACCCTT
CA
back to top