DY259984

Overview
NameDY259984
Unique NameDY259984
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length995
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 1.222e-97
Identity = 170/235 (72.34%), Postives = 187/235 (79.57%), Query Frame = 1
Query:  115 RGTFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVRGAGDVHSVSIKGSKT-GWQAMSRNWGPNWQSNSYLNGQSLSFQ*QPVTAGMGLTTM---LCPPIWHFGPTLEGG 807
            +GT GD  GGWQ GHATFY              YGNLY QGYGTNTAALSTALFNNGL+CG+CYEMKC +DP+WCL  +I VTATNFCPPN  LSNDNGGWCNPPLQHFD+AEPAFLQIAQYRAGIVP+SFRR+PC KKGGIRFT+NGHSYFNLVL++NV GAGDVH+VSIKGSKT  WQAMSRNWG NWQSNSY+N QSLSFQ   VT   G T +   + P  W FG T +GG
Sbjct:   21 QGTHGD-DGGWQGGHATFYGGEDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWCLGSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQ---VTTSDGRTLVSNDVAPSNWQFGQTYQGG 251          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 5.677e-95
Identity = 159/228 (69.74%), Postives = 184/228 (80.70%), Query Frame = 1
Query:  133 YGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVRGAGDVHSVSIKGSKTGWQAMSRNWGPNWQSNSYLNGQSLSFQ*QPVTAGMGLTTM---LCPPIWHFGPTLEGG 807
            YGGGW + HATFY              YGNLYSQGYGT+TAALSTALFNNGLSCGSC+E++CEND KWCLPGSI+VTATNFCPPN AL+N+NGGWCNPPL+HFD+A+P F +IAQYRAGIVP+S+RR+PC ++GGIRFT+NGHSYFNLVL+TNV GAGDVHS +IKGS+T WQAMSRNWG NWQSNSYLNGQ+LSF+   VT   G T +     P  W +G T  GG
Sbjct:   22 YGGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGSCFEIRCENDGKWCLPGSIVVTATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFK---VTTSDGRTVVSFNAAPAGWSYGQTFAGG 246          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 9.064e-93
Identity = 162/226 (71.68%), Postives = 177/226 (78.32%), Query Frame = 1
Query:  139 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVRGAGDVHSVSIKGSKTGWQAMSRNWGPNWQSNSYLNGQSLSFQ*QPVTAGMGLTTM---LCPPIWHFGPTLEGG 807
            GGWQS HATFY              YGNLYSQGYGTNTAALSTALFN+G +CGSCYE++C+N    CLPGSI VTATNFCPPN  L +D+GGWCNPP  HFDMAEPAFL IAQYRAGIVP+SFRR+PC KKGG+RFTVNGHSYFNLVLVTNV GAGDV SVSIKGS+TGWQ MSRNWG NWQSN++L+GQSLSFQ   VTA  G T     +  P W FG T EGG
Sbjct:   22 GGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQ---VTASDGRTVTSNNVAHPGWQFGQTFEGG 244          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 9.064e-93
Identity = 162/226 (71.68%), Postives = 177/226 (78.32%), Query Frame = 1
Query:  139 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVRGAGDVHSVSIKGSKTGWQAMSRNWGPNWQSNSYLNGQSLSFQ*QPVTAGMGLTTM---LCPPIWHFGPTLEGG 807
            GGWQS HATFY              YGNLYSQGYGTNTAALSTALFN+G +CGSCYE++C+N    CLPGSI VTATNFCPPN  L +D+GGWCNPP  HFDMAEPAFL IAQYRAGIVP+SFRR+PC KKGG+RFTVNGHSYFNLVLVTNV GAGDV SVSIKGS+TGWQ MSRNWG NWQSN++L+GQSLSFQ   VTA  G T     +  P W FG T EGG
Sbjct:   22 GGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQ---VTASDGRTVTSNNVAHPGWQFGQTFEGG 244          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 339.732 bits (870), Expect = 1.546e-92
Identity = 163/236 (69.07%), Postives = 180/236 (76.27%), Query Frame = 1
Query:  109 CF--RGTFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVRGAGDVHSVSIKGSKTGWQAMSRNWGPNWQSNSYLNGQSLSFQ*QPVTAGMGLTT-MLCPPIWHFGPTLEGG 807
            CF  R    DYG  WQS HATFY              YGNLYS GYGTNTAALST LFN+G +CGSCYE++C+ND +WCLPGS+ VTATN CPPN AL ND+GGWCNPP  HFDMAEPAFLQI  YRAGIVP+S+RR+PC KKGGIRFT+NGHSYFNLVLVTNV G GDV SVSIKGS TGWQ MSRNWG NWQSNSYL+GQSLSFQ   V+ G  +T+  + P  W FG T EGG
Sbjct:   16 CFLARRAAADYGS-WQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTVLFNDGAACGSCYELRCDNDGQWCLPGSVTVTATNLCPPNYALPNDDGGWCNPPRPHFDMAEPAFLQIGVYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQ-VAVSDGRTVTSNNVVPAGWQFGQTFEGG 249          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 4.498e-92
Identity = 155/232 (66.81%), Postives = 181/232 (78.02%), Query Frame = 1
Query:  127 GDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVRGAGDVHSVSIKGSKTGWQAMSRNWGPNWQSNSYLNGQSLSFQ*QPVTAGMGLTTM---LCPPIWHFGPTLEGGSV 813
            G  GGGW + HATFY              YGNLYSQGYGTNTAALSTALFNNGLSCG+C+E++C+ND KWCLPGSI+VTATNFCPPN AL N+ GGWCNPP QHFD+++P F +IAQYRAGIVP+++RR+PC ++GGIRFT+NGHSYFNLVL+TNV GAGDVHS  +KGS+TGWQAMSRNWG NWQSNSYLNGQSLSF+   VT   G T +   +    W FG T  G  +
Sbjct:   21 GYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFK---VTTSDGQTIVSNNVANAGWSFGQTFTGAQL 249          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 333.569 bits (854), Expect = 1.108e-90
Identity = 155/237 (65.40%), Postives = 183/237 (77.22%), Query Frame = 1
Query:  109 CFRGTFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVRGAGDVHSVSIKGSKTG-WQAMSRNWGPNWQSNSYLNGQSLSFQ*QPVTAGMGLTTM---LCPPIWHFGPTLEGG 807
            C      D  GGW+ GHATFY              YGNL+SQGYG  TAALSTALFN+G  CG+C+E++CE+DP+WC+PGSIIV+ATNFCPPN AL+NDNGGWCNPPL+HFD+AEPAFLQIAQYRAGIVP++FRR+PC K GGIRFT+NG+ YF+LVL+TNV GAGD+ +VS+KGSKT  WQ+MSRNWG NWQSN+YL GQSLSFQ   VT   G T +   + P  W FG T EGG
Sbjct:   20 CLYSINSDDNGGWERGHATFYGGADASGTMGGACGYGNLHSQGYGLQTAALSTALFNSGQKCGACFELQCEDDPEWCIPGSIIVSATNFCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKGSKTDQWQSMSRNWGQNWQSNTYLRGQSLSFQ---VTDSDGRTVVSYDVVPHDWQFGQTFEGG 253          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 329.717 bits (844), Expect = 1.600e-89
Identity = 150/227 (66.08%), Postives = 178/227 (78.41%), Query Frame = 1
Query:  133 YGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVRGAGDVHSVSIKGSKTGWQAMSRNWGPNWQSNSYLNGQSLSFQ*QPVTAGMGLTTM---LCPPIWHFGPTLEG 804
            Y  GW + HATFY              YGNLYSQGYGTNTAALSTALFNNGLSCG+C+E+KC++D  WCLPG+IIVTATNFCPPN AL N+ GGWCNPPL HFD+++P F +IAQY+AG+VP+S+RR+PC ++GGIRFT+NGHSYFNLVLVTNV GAGDVHSV++KGS+T WQ MSRNWG NWQSN+ LNGQ+LSF+   VTA  G T +   + P  W FG T  G
Sbjct:   26 YDAGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFK---VTASDGRTVVSNNIAPASWSFGQTFTG 249          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 1.402e-85
Identity = 142/225 (63.11%), Postives = 170/225 (75.56%), Query Frame = 1
Query:  136 GGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVRGAGDVHSVSIKGSKTGWQAMSRNWGPNWQSNSYLNGQSLSFQ*QPVTAGMGLTTMLCPPIWHFGPTLEG 804
            GG WQ+ HATFY              YGNLYSQGYGTNTAALSTALFNNG+SCG+C+E+KC NDP+WC  GS  I++TATNFCPPNLA  +DNGGWCNPP +HFD+A P FL+IAQYRAGIVP+S+RR+PC K+GGIRFT+NGH YFNLVL+TNV GAGD+   S+KGS+TGW ++SRNWG NWQSN+ L GQ+LSF+          +  + P  W FG T  G
Sbjct:   28 GGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNWQFGQTFVG 252          
BLAST of DY259984 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 3.452e-84
Identity = 142/225 (63.11%), Postives = 166/225 (73.78%), Query Frame = 1
Query:  136 GGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPG--SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVRGAGDVHSVSIKGSKTGWQAMSRNWGPNWQSNSYLNGQSLSFQ*QPVTAGMGLTTMLCPPIWHFGPTLEG 804
            GG WQ+ HATFY              YGNLYSQGYGTNTAALST+LFN+G SCG+C+E+KC NDPKWC PG  S+ VTATNFCPPNLA  +DNGGWCNPP  HFD+A P FL+IA+YRAGIVPIS+RR+ C K GGIRFT+NGH YFNLVL+TNV GAGD+   S+KGSKTGW +++RNWG NWQSN+ L GQSLSF+          +  + P  W FG T  G
Sbjct:   31 GGSWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGTNTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRRVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNWQFGQTFVG 255          
The following BLAST results are available for this feature:
BLAST of DY259984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
EXPA8_ARATH1.222e-9772.34Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXP10_ARATH5.677e-9569.74Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA4_ORYSJ9.064e-9371.68Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI9.064e-9371.68Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA2_ORYSJ1.546e-9269.07Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA1_ARATH4.498e-9266.81Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXPA2_ARATH1.108e-9065.40Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXP15_ARATH1.600e-8966.08Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA4_ARATH1.402e-8563.11Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXP16_ARATH3.452e-8463.11Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YN14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259984 ID=DY259984; Name=DY259984; organism=Citrus clementina; type=EST; length=995bp
CTTTTTCTTAACAAATAAACACATAAACATAAGCAGCCAGCAGTAGCAGC
CATGGCCAATATTGCAGCATCATCTAGCGTTGCTCTCCTTTTGTTTGTGC
TCAATTTTTGCTTTCGTGGCACATTTGGAGACTATGGTGGTGGGTGGCAA
AGTGGCCATGCAACTTTCTATGGCGGGGGTGATGCTTCCGGCACAATGGG
TGGTGCTTGTGGGTATGGCAATTTGTACAGCCAAGGCTATGGGACTAACA
CTGCAGCACTTAGTACCGCTCTATTCAACAATGGCCTAAGCTGTGGTTCA
TGCTATGAAATGAAATGTGAAAATGACCCCAAGTGGTGCCTCCCCGGCTC
CATCATTGTCACCGCCACCAACTTCTGCCCACCTAACCTTGCCCTGTCTA
ACGACAACGGCGGTTGGTGCAATCCTCCCCTCCAGCACTTTGACATGGCT
GAGCCCGCTTTCTTGCAAATTGCCCAATACCGCGCCGGCATCGTCCCAAT
TTCCTTCAGAAGGATCCCGTGTGCGAAGAAAGGAGGAATAAGGTTTACCG
TCAATGGACACTCATACTTCAACCTGGTTTTGGTCACAAATGTCCGAGGA
GCAGGAGATGTACATTCAGTATCAATCAAGGGTTCAAAGACTGGATGGCA
AGCAATGTCAAGGAACTGGGGCCCAAATTGGCAGAGCAATTCTTATCTTA
ACGGCCAAAGTCTTTCTTTCCAGTGACAGCCAGTGACGGCAGGAATGGGA
CTCACCACCATGTTGTGCCCGCCAATTTGGCATTTTGGGCCAACCCTTGA
GGGTGGGTCCGTTTTAAATTTTAAAAATTTAAAAAAGTGGAACCAAAATT
GGAAATTTAATTGAAATTTGGCCTTTGGGTTTGGGAAAGGAAAAAGGGTG
AAAAAAGGGGGTAAGGGAAAGCCGAAAGGCCGGCCCCAAGTTGGCTCGGC
TTTGGTACCGGGGGGGGCCCCGTTGCGCCCCCCCCCCAAGCCCTC
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