DY260000

Overview
NameDY260000
Unique NameDY260000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1039
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260000_ssr984 microsatellite DY260000_ssr984:984..995. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DY260000 vs. ExPASy Swiss-Prot
Match: CQ061_BUFBG (UPF0451 protein C17orf61 homolog OS=Bufo bufo gargarizans PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.280e-12
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 3 
Query:   27 IWHKIXXXXXXXXXXXXTYGSHGFK--PQNPSFKEVWQTASLYHLVHTAALVAAPITKNPNIFGGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWAS 338
            +W ++             YG+HGF+   ++   KE+++T + YH +H+ AL+A P  + P + G LLT+GI+ FSGT Y  A   D   +  AP+GG   I  WA+
Sbjct:    6 VWGRLGAVSGALAVTAGAYGAHGFRRSDRDEYLKELFETGNRYHFLHSLALLAVPHCRRPLLAGSLLTSGIVLFSGTFYYQALSGDPTLTKAAPYGGTLLILGWAA 111
The following BLAST results are available for this feature:
BLAST of DY260000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CQ061_BUFBG1.280e-1234.91UPF0451 protein C17orf61 homolog OS=Bufo bufo garg... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YO12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260000 ID=DY260000; Name=DY260000; organism=Citrus clementina; type=EST; length=1039bp
GAAGAATTATTCCCTTGGATCCTGTGATCTGGCATAAAATTGCTGCTGTA
TCTGGAGTAGCTGCACTTGGTTTAGGCACCTATGGCTCCCATGGCTTCAA
GCCCCAAAACCCCTCTTTCAAAGAGGTATGGCAAACGGCTTCTCTTTACC
ATTTGGTTCACACAGCTGCTTTGGTTGCTGCCCCTATCACTAAAAATCCC
AACATTTTTGGAGGCCTTTTGACTGCCGGAATTCTAGCTTTCTCTGGGAC
GTGCTATACTGTGGCATTCCTTGAGGACAGGAAGTACTCTACTCTAGCGC
CCTTTGGTGGCTTTGCCTTCATTGGAGCTTGGGCGAGCTTGCTATTCTAA
GGATTTGGTCTTTAGCTACCTCCTGTTGCTGCTTTGGTATCAAACAGATG
CTGAAGGAATTTATTGGCATCGGTCTCTTATCACTGTTGCTTCTGGTCTA
TGATGTGTATTATTTAACTATATTTTAGTATGCTCGAATGCCCTCTTGTG
TAACTTAATGGCCCTGTTAATGTCATATTTATTCCCAATAAAGTCTGTTC
CTGAAGATGAACACAACTTATTGTCATTTTGTAAAGCCATATTCCTCTGT
GTGACAGTGTGAGCCCCGGCAAACAAAAAAAAAAAAAACAAAAACTCACC
TTTCTTCGTCAAAATTGGAAATCTTAAAAAAACCATAGCCTATCACATTG
TTCCCTAACAACACGGTCCTCTTCCAATAAAAAATCCACTCATTATTATC
TAATCCGAGCAGATTCCCCTCAGAAGCGATTCTCATCTACATAGTCCCTC
ACTACTTTCTCCGCACTCCTCGCTCCCCCTGTTCACTTCCTCCCCCTCTC
CCACTCCCTCTCACCCCCCCCCCCATCCTTTTCCTCCCTACCTTTCGCTC
TCCTCCGCAAATCCCACCACTCCAAAATCCCCCTATCTCCTCCTCACACC
ACCCTCTCACATTTTTCACACTTCTTTGACAAACTCCCTCCCTCCTACTA
CCCTCATCCAACCAACAACCCACAATTCCTCCCTTTCTA
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