DY260007

Overview
NameDY260007
Unique NameDY260007
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length976
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14872 contig Ccv1_Contig14872:6..981. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260007 vs. ExPASy Swiss-Prot
Match: HS26M_ARATH (26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.787e-53
Identity = 123/233 (52.79%), Postives = 152/233 (65.24%), Query Frame = 3
Query:   78 MALARLALRNVQQRVSTSSPSLANLHNNLGERSASTIGGVQRQKWSNELLKRFMATAAND-EKKQDREVAVTEKXXXXXXXXXXXXXXXXXNND------IPVLAEFFPSGLGNALMQATENINRIFENLNFTPSQLMGRVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKG--XXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEK 749
            MALARLALRN+QQ++S   PSL      +G+   S   G+   + +   L RFMAT+A + E K + EV+V+EK                  N        P L EFFP  +GN L+QATEN+NRIF+N N  P QLMG+VKEQDDCYKLRY+VPGL K+DVKIT++DG+LTIKG                WS++SYGYYNTSL+LPDDAK ++IKAELKNGVLN+VIPRTEK
Sbjct:    1 MALARLALRNLQQKLS---PSL------MGQ---SCERGLVGNRHNPMKLNRFMATSAGEQEDKMNTEVSVSEKKSPRQNFPRRRGRKSLWRNTDDHGYFTPTLNEFFPPTIGNTLIQATENMNRIFDNFNVNPFQLMGQVKEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKGDHKAEEEKGSPEEDEYWSSKSYGYYNTSLSLPDDAKVEDIKAELKNGVLNLVIPRTEK 221          
BLAST of DY260007 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.520e-17
Identity = 45/124 (36.29%), Postives = 76/124 (61.29%), Query Frame = 3
Query:  399 ALMQATENINRIFENLNFTPSQLMGR--------VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 746
            ++ Q  + ++R+FE+    P + +G         +K+++   ++R+D+PGL K+DVK+++ D +L IKG              WS+R+Y  Y+T L LPD+ + D++KAELKNGVL I IP+T+
Sbjct:   48 SMRQILDTMDRVFEDTMTFPGRNIGGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDS-WSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKTK 170          
BLAST of DY260007 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.892e-16
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 3
Query:  477 VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 746
            +KE++   K+R+D+PGL K+DVKI++ D VL IKG              WS RS   Y T L LPD+ + D+IKAELKNGVL I IP+T+
Sbjct:  131 IKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDS----WSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTK 216          
BLAST of DY260007 vs. ExPASy Swiss-Prot
Match: HS23M_ORYSJ (23.6 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.479e-15
Identity = 49/134 (36.57%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  366 LAEFFP----SGLGNALMQATENINRIFENLNFTPSQLMGRVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKG----XXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRT 743
            L +F P     G+G+AL Q  E + R           L G+V+E ++ Y+LR++VPGLGKDDV++ + DGVL I G                  W+A +   Y+  L LP+DA A+ I AE+++GVL++ +PR+
Sbjct:   86 LRDFVPLRLVDGIGSALSQVAETLTR----------PLTGKVREDEERYRLRFEVPGLGKDDVRVYVDDGVLAIHGEKRDVVEEDRGRDGDGECWAAAT---YHAGLLLPEDAVAEGITAEVRDGVLHVTVPRS 206          
BLAST of DY260007 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.479e-15
Identity = 43/124 (34.68%), Postives = 74/124 (59.68%), Query Frame = 3
Query:  399 ALMQATENINRIFENLNFTPSQLMG--------RVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 746
            ++ Q  + ++RIFE+    P + +G         +K+++   ++R+D+PG+ K+DVK+++ D VL IK               WS +SY  Y+T L LPD+ + +++KAELK+GVL I IP+T+
Sbjct:  101 SMRQMLDTMDRIFEDAITIPGRNIGGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGGEDC---WSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKTK 221          
BLAST of DY260007 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.136e-14
Identity = 46/124 (37.10%), Postives = 74/124 (59.68%), Query Frame = 3
Query:  402 LMQATENINRIFEN-LNFTPSQLMGR--------VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 746
            + Q  + ++R+FE+ + F  S+  G         +K+ ++  K+R+D+PGL K++VK+++ D VL IKG              W  R+Y  Y+T L+LPD+   D++KAELKNGVL I IP+T+
Sbjct:  110 MRQMMDTMDRLFEDTMTFPGSRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDS--WG-RNYSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKTK 230          
BLAST of DY260007 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.084e-13
Identity = 46/141 (32.62%), Postives = 73/141 (51.77%), Query Frame = 3
Query:  354 DIPVLAEFFPSGLGNALMQATENINRIFENLNFTPSQLMGR----------VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 746
            D+       P      + Q  + ++R+FE+    P +              + + ++  K+R+D+PGL K+DVK+++ + +L IKG              W  R+Y  Y+T L+LPD+   D+IKAELKNGVL I IP+TE
Sbjct:   86 DVSPFGVLDPMSPMRTMRQMIDTMDRLFEDTMTFPGRNRASGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHS-WG-RNYSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTE 224          
BLAST of DY260007 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.296e-11
Identity = 40/130 (30.77%), Postives = 67/130 (51.54%), Query Frame = 3
Query:  402 LMQATENINRIFENLNF----TPSQLMGR--------VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXX---WSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 746
            + Q  + ++RIF+++      TP + +          V E D   ++R+D+PGL +++VK+ + D  L I+G                 W  RS   Y+  LALPD+    +++AELKNGVL + +P+TE
Sbjct:  100 MRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPKTE 229          
The following BLAST results are available for this feature:
BLAST of DY260007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
HS26M_ARATH1.787e-5352.7926.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22C_SOYBN3.520e-1736.29Small heat shock protein, chloroplastic (Fragment)... [more]
HS25P_ARATH3.892e-1648.8925.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS23M_ORYSJ1.479e-1536.5723.6 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS21C_PEA1.479e-1534.68Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS22C_PETHY2.136e-1437.10Small heat shock protein, chloroplastic OS=Petunia... [more]
HS21C_SOLLC3.084e-1332.62Small heat shock protein, chloroplastic OS=Solanum... [more]
HS26P_ORYSJ1.296e-1130.7726.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YO20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260007 ID=DY260007; Name=DY260007; organism=Citrus clementina; type=EST; length=976bp
TAAGAGGCAAAAAAGACAAGAGGACTAAAGACGAACAACCCAATTTCTCA
AAAAACTCCCCTAGTTACCGAAAAAAAATGGCTTTGGCTCGTTTGGCTTT
GAGGAACGTGCAGCAAAGGGTGTCAACTTCTTCCCCTTCTCTGGCAAATT
TGCATAATAATCTTGGTGAGAGAAGTGCTAGTACCATCGGTGGTGTACAA
AGGCAAAAGTGGAGTAATGAGTTGTTGAAGAGGTTCATGGCAACAGCTGC
CAATGATGAGAAAAAACAAGACAGAGAAGTCGCCGTGACTGAAAAAAGAT
CAAGGCTCTTTCCAAGGAGAAGAGGCAGGAGGGGGAGTCTTTGGAGGAAC
AATGACATTCCCGTACTTGCTGAGTTCTTTCCTTCAGGGCTTGGAAATGC
ACTCATGCAAGCAACCGAAAACATTAACAGGATATTCGAAAACTTGAACT
TCACACCATCACAACTCATGGGGCGGGTGAAAGAGCAAGACGACTGCTAC
AAGCTGCGGTATGACGTTCCGGGCCTAGGCAAAGATGATGTGAAGATCAC
CATTCATGATGGGGTTCTGACAATAAAGGGTGAGCACAAGGAAGAGGAAG
AGGAAAGCTCTGACGACGAACACTGGTCAGCAAGGAGCTATGGTTACTAC
AACACAAGCCTCGCGCTGCCTGATGATGCGAAGGCTGACGAGATTAAGGC
CGAGTTGAAAAACGGGGTTCTTAATATTGTAATTCCTAGGACCGAAAAAG
CCTAACCAGGAGGTGAAGGAATTGAGAATCCATTAATGGAATTGGCGTTT
ATGCCTGGTTCCGTGATGTTTTTTGGGGAGGGTTTTGGGGTGGGTTTTGA
AATGGAAAATCAATTTTATTAACCTTTGCTTTAGGAATTAAAAAAAAAAA
TAACTTTGGGGTTTTATTTCCGGAAAGAACCCAGCTGGAATTTCAAAAGC
CCCCTTTTGTTTCCTAGTCTTGTAAA
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