DY260012

Overview
NameDY260012
Unique NameDY260012
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length996
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1390 contig Ccv1_Contig1390:1..996. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_ERWCT (Bifunctional polymyxin resistance protein arnA OS=Erwinia carotovora subsp. atroseptica GN=arnA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.399e-23
Identity = 64/178 (35.96%), Postives = 89/178 (50.00%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENP-ARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAHKAGRGQTQ 526
            FNW+GPR+D +   D    G  R +     NL+   P+KLVDGG  +R F  I D IEA+  +IEN   + +G I N+GNPHNE ++R+L EM+   +    +          +DV S  +YG+GY D   R P +    + L W P   +   +  TL Y  RT    H A    TQ
Sbjct:  498 FNWMGPRLDTL---DAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRVIENRNGQCDGQIINIGNPHNEASIRELGEMLLTSFNAHPLRDRFPPFAGFIDVESSSYYGKGYQDVAHRTPSIRNAKRLLEWEPTVKMEQTVAETLDYFLRTVDVPHTADATDTQ 672          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP3 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae (strain 342) GN=arnA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.758e-22
Identity = 57/165 (34.55%), Postives = 91/165 (55.15%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENP-ARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 487
            FNW+GPR+D    ++    G  R +     NL+   P+KL++GG+ +R F  I D IEA+  +IEN   R +G I N+GNP NE ++++LAEM+   + +  +           +V S ++YG+GY D + R P +    + L W PK  + + +E TL +  RT
Sbjct:  491 FNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKRCFTDISDGIEALFRIIENKDGRCDGQIINIGNPENEASIKELAEMLLACFERHPLRDRFPPFAGFREVESSDYYGKGYQDVEHRKPSIRNAKRCLNWEPKVEMEETVEHTLDFFLRT 652          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP7 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=arnA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.908e-22
Identity = 57/165 (34.55%), Postives = 91/165 (55.15%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENP-ARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 487
            FNW+GPR+D    ++    G  R +     NL+   P+KL++GG+ +R F  I D IEA+  +IEN   R +G I N+GNP NE ++++LAEM+   + +  +           +V S ++YG+GY D + R P +    + L W PK  + + +E TL +  RT
Sbjct:  491 FNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKRCFTDISDGIEALFRIIENKDGRCDGQIINIGNPDNEASIKELAEMLLACFERHPLRDRFPPFAGFREVESSDYYGKGYQDVEHRKPSIRNAKRCLNWEPKVEMEETVEHTLDFFLRT 652          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_YERE8 (Bifunctional polymyxin resistance protein arnA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=arnA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.409e-22
Identity = 60/163 (36.81%), Postives = 87/163 (53.37%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTV----DVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475
            FNW+GPR+D    +D    G  R +     NL+   P+KLVDGG+ +R F  I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+   + K   E     P      D+ S  +YG+GY D + R P +    + L W P+ +L   +  TL +
Sbjct:  491 FNWMGPRLD---NLDAARIGSSRAITQLILNLVEGSPIKLVDGGEQKRCFTDIHDGIEALFRIIENRDGACDGQIINIGNPTNEASIRELAEMLLRCFEK--HELRHNFPPFAGFKDIESSAYYGKGYQDVEYRTPSIRNARRILDWQPEIALEQTVMETLDF 648          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_SERP5 (Bifunctional polymyxin resistance protein arnA OS=Serratia proteamaculans (strain 568) GN=arnA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.371e-22
Identity = 60/165 (36.36%), Postives = 86/165 (52.12%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 487
            FNW+GPR+D    +D    G  R +     NL+   P+KL+DGG  +R F  I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+ E +    +           DV S  +YG+GY D + R P +    + L W P  ++   +  TL Y  RT
Sbjct:  491 FNWMGPRLD---NLDAARIGSSRAITQLILNLVEGSPIKLMDGGAQKRCFTDINDGIEALFRIIENRDGLCDGQIVNIGNPTNEASIRELAEMLLESFNNHPLRDRFPPFAGFKDVESSSYYGKGYQDVEHRTPSIKNARRLLDWQPTIAMQQTVADTLDYFLRT 652          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_PECCP (Bifunctional polymyxin resistance protein arnA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.093e-21
Identity = 61/178 (34.27%), Postives = 88/178 (49.44%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY--AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAHKAGRGQTQ 526
            FNW+GPR+D +   D    G  R +     NL+   P+KLVDGG  +R F  I D IEA+  +IEN   + +G I N+GNPHNE ++R+L +M+   +    +          ++V S  +YG+GY D   R P +    + L W P   +   +  TL Y  RT    H      TQ
Sbjct:  497 FNWMGPRLDTL---DAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRNGQCDGQIINIGNPHNEASIRELGDMLLTSFNAHPLRDRFPPFAGFIEVESSSYYGKGYQDVAHRTPSIRNAKRLLEWEPTVKMEQTVAETLDYFLRTVDPQHADNVTDTQ 671          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_PROMH (Bifunctional polymyxin resistance protein arnA OS=Proteus mirabilis (strain HI4320) GN=arnA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.428e-21
Identity = 57/161 (35.40%), Postives = 86/161 (53.42%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475
            FNW+GPR+D    ++    G  R +     NL+   P+KLVDGG+ +R F  I D IEA+  +IEN   + +G I N+GNP NE ++R+LAEM+ + + K  + G          + S  +YG+GY D + R P +    + L W P       +E TL +
Sbjct:  491 FNWMGPRLD---NLNSARIGSSRAITQLILNLVEGSPIKLVDGGEQKRCFTDINDGIEALFRIIENRDNKCDGQIINIGNPTNEASIRELAEMLLDCFEKHELRGHFPPFAGFKKIESSSYYGKGYQDVEHRKPSIKNAERLLDWKPTIETRQTVEETLDF 648          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_ERWT9 (Bifunctional polymyxin resistance protein arnA OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=arnA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.428e-21
Identity = 56/161 (34.78%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPAR-ANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 475
            FNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I D IEA+ L+IEN  +  +G I N+GNP NE +++QLAE + E + +  +           +V S  +YG+GY D + R P +    Q L W P  ++   ++ TL +
Sbjct:  491 FNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGRQKRCFTDIHDGIEALFLIIENKQKNCDGQIINIGNPENEASIKQLAEQLLESFERHPLRDRFPPFAGFREVESSTYYGKGYQDVEHRKPSIRNAKQLLNWQPTIAMDKTIDDTLDF 648          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_SHIDS (Bifunctional polymyxin resistance protein arnA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=arnA PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.436e-21
Identity = 58/172 (33.72%), Postives = 91/172 (52.91%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 487
            FNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  491 FNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652          
BLAST of DY260012 vs. ExPASy Swiss-Prot
Match: ARNA_SHIBS (Bifunctional polymyxin resistance protein arnA OS=Shigella boydii serotype 4 (strain Sb227) GN=arnA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.436e-21
Identity = 58/172 (33.72%), Postives = 91/172 (52.91%), Query Frame = 2
Query:    2 FNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 487
            FNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  491 FNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652          
The following BLAST results are available for this feature:
BLAST of DY260012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_ERWCT3.399e-2335.96Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_KLEP33.758e-2234.55Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_KLEP74.908e-2234.55Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERE86.409e-2236.81Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SERP58.371e-2236.36Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PECCP1.093e-2134.27Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PROMH1.428e-2135.40Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ERWT91.428e-2134.78Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHIDS2.436e-2133.72Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHIBS2.436e-2133.72Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YP02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260012 ID=DY260012; Name=DY260012; organism=Citrus clementina; type=EST; length=996bp
CTTTAACTGGATTGGTCCGAGGATGGACTTCATTCCCGGCATTGATGGTC
CAAGTGAGGGTGTTCCAAGGGTTCTGGCATGCTTTAGTAACAATCTCCTT
CGCCGTCAACCACTCAAGCTTGTCGACGGTGGCCAATCTCAGAGGACTTT
TATTTACATAAAGGATGCTATTGAAGCTGTTCTATTAATGATTGAAAATC
CAGCAAGGGCCAATGGTCATATTTTCAATGTGGGCAACCCCCACAATGAA
GTTACAGTTCGACAGCTTGCTGAGATGATGACTGAGGTGTATGCAAAGGT
GAGTGGAGAGGCTGCTTTGGAGGAGCCAACAGTTGATGTCAGCTCCAAAG
AATTTTATGGTGAAGGATATGATGATAGTGACAAGAGAATTCCAGACATG
ACCATTATAAATCAACAGCTTGGTTGGAACCCGAAGACATCACTTTGGGA
CTTGCTTGAATCAACCCTTACCTATCAGCACAGGACATATGCGGAGGCCC
ATAAAGCAGGCCGTGGCCAAACCCAGTTGCATCCAGCTGAGGAGATATAC
TGTTCCGATGCTTGTGGCAAACATTTAAATTCCTTTTTCCAGTTAGTCTT
GAATAAATTCGAACGGTTGTTTCAAATACACTCCAACTTCTTTTTTTCCC
CCTCCCCAGTGGTGAGTCATCATACAAAACTACACGTACCTCCAAGAACC
CTCACATCAATGCTTTGAATACCTACCAACACCCTCCACTATACCTTCCT
AACCCCCCTCCCTCACACCCTCCCCCCTCCTACCCAAAACTCTATCGCCC
ACGCCCTGCACCACCTCCCCCTCCCGCGTCGACCCAACTACTCCAGAACA
CACAGCCTCTCTAATCCACAGACCCACACCCCCCCCTCGCGCTTTACCAT
TCCGCCTGCGACACACTAAGCCCCTCTTCACCACCCCCACGTCACCATCC
ACCTCCCCCCTCTCCTACCCCCCACCTTCCGCTACTATCACCTCCC
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