DY260017

Overview
NameDY260017
Unique NameDY260017
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1008
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14712 contig Ccv1_Contig14712:136..1143. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260017 vs. ExPASy Swiss-Prot
Match: PCP_PYRFU (Pyrrolidone-carboxylate peptidase OS=Pyrococcus furiosus GN=pcp PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.234e-12
Identity = 55/184 (29.89%), Postives = 84/184 (45.65%), Query Frame = 3
Query:   81 VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCHYVYYHSLRFAEQNGTKSL--FVHVP 626
            VTGF+ F G   NPTE I  +L           G+ +G   +      G V P+       + EK  E       I +H G+  G +  +IE+ AVN    R PD  G K +  PI P          +++P+++I + L ++G     S+ AG ++C+YV Y SL  +   G   +  F+HVP
Sbjct:    5 VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAKEVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG---APTAYFSTLPIKKIMKKLHERGIPAYISNSAGLYLCNYVMYLSLHHSATKGYPKMSGFIHVP 168          
BLAST of DY260017 vs. ExPASy Swiss-Prot
Match: PCP_THELI (Pyrrolidone-carboxylate peptidase OS=Thermococcus litoralis GN=pcp PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.845e-11
Identity = 52/184 (28.26%), Postives = 86/184 (46.74%), Query Frame = 3
Query:   81 VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFVCHYVYYHSLRFAEQNG--TKSLFVHVP 626
            +TGF+ F G S+NPTE I     +Y  +K +   ++ G   +L  +   A   L + L+    E           I ++ G+    +   +E+ AVN    R PD  G++P    I   + +       ++PV  IT+TL   G     S  AG ++C+YV + +L F++  G   K+ F+HVP
Sbjct:    6 ITGFEPFGGDSKNPTEQIA----KYFDRKQIGNAMVYG--RVLPVSVKRATIELKRYLEEIKPE-----------IVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEKI---EEDAPLAYMATLPVRAITKTLRDNGIPATISYSAGTYLCNYVMFKTLHFSKIEGYPLKAGFIHVP 169          
The following BLAST results are available for this feature:
BLAST of DY260017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PCP_PYRFU1.234e-1229.89Pyrrolidone-carboxylate peptidase OS=Pyrococcus fu... [more]
PCP_THELI8.845e-1128.26Pyrrolidone-carboxylate peptidase OS=Thermococcus ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YP08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260017 ID=DY260017; Name=DY260017; organism=Citrus clementina; type=EST; length=1008bp
CCATTAACACATTCTTATATTTCATCTCAAGACAATTGTTTGTAATGGGG
TCTGAAGGGCCACCTGCTGTAACAATCCATGTGACTGGATTTAAGAAATT
CCATGGAGTTTCAGAGAATCCAACTGAAACAATTGTTAGCAATTTGAGAG
AGTATATGAAGAAGAAGGGTATGCCAAAAGGTCTAATTCTTGGAAGTTGC
AATATTCTTGAGACCGCCGGACATGGGGCAGTTGCTCCCCTATATCAGAC
ATTGCAATCCGCCATAAATGAGAAGGATTCTGAATCAGCAAATTCTAGGA
GAATTATTTGGGTTCACTTTGGTGTTAACAGTGGTGCAACAAGATTCGCA
ATTGAGCAACAAGCTGTCAATGAAGCTACTTTTCGATGTCCTGATGAAAT
GGGGTGGAAACCTCAGAAAGTACCCATTTTTCCTGCTGATGGTGAAATAT
CACGAGTACGAGAGACTTCAATTCCTGTTGAGGAGATTACAAGAACATTG
GCAAAGAAGGGTTATGAGGTGATTACCTCAGATGATGCAGGCCGATTTGT
TTGCCACTATGTTTACTATCACTCCCTTCGCTTTGCAGAACAAAATGGGA
CAAAGTCACTCTTCGTTCATGTGCCTCTCTTCCTAACCATAGATGAAGAG
ACCCAAATGCAATTTGCCGCTTCCTTTGTTGGAGGTACCTGCTACTTTTA
GTTAAGTGGACTGTATTGTCGTTCACCTATACTTCTTTGCTTCCGAAAGC
TTAATAATGTGTGCTTTGTCACTGGCCCCATGTGTGAACGGGGGACCCTT
GGGTGGAATTGAAAAAGCCTTAAATAAACCCCGAATCTCTTGTTTGGAAA
AACCAACCACAAAAAAAAAAACATTTTACTTTTTTTGCACACCTTTCCAC
CCCCTTCCCCCCCTCCTTTTATTTTTTTTCAAAAAACTTCCTCTCCCAAT
TTCCTTCAACCCCTTAAACGGTAAAATGTCGAAAAGGAAAACCCTCTTGT
CTTTCCCG
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