DY260020

Overview
NameDY260020
Unique NameDY260020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1058
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 5.840e-61
Identity = 122/226 (53.98%), Postives = 142/226 (62.83%), Query Frame = 3
Query:   84 GGPARNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWRDAPGGEYAWGYCFISEISPPSPHC--NLNYPC-RGKYY-GRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWMTAQPPKPSCHEVLTDEWKPSANDLNPGRLPGYRPTHNIIH 749
            GG   + G     G  D G   D G L  II +  F+ LL +RND RCPA GFYTY+AFI AAK FP FGN+G++ MR REIAAF   T HETTGGW DAP G YAWGYC++ EI+   P+C  + NY C  GK Y GRGPIQL+WNYNY  C                  TDPV+SF++AIWFWM  Q PKPSCH V+T  W PSA DL  GR+PGY    NII+
Sbjct:   63 GGGGGDGGDDGCDGGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLC--GDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIIN 285          
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.000e-60
Identity = 111/198 (56.06%), Postives = 137/198 (69.19%), Query Frame = 3
Query:  168 KIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWRDAPGGEYAWGYCFISEISPPSPHC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWMTAQPPKPSCHEVLTDEWKPSANDLNPGRLPGYRPTHNIIH 749
            KIISR MF+ +L +RN+  CPA+GFYTYDAF+ AAK+FP+FG +G+  +R RE+AAF   T HETTGGW  AP G YAWGYCF+ E +P S +C  +  YPC  GK YYGRGP+QL+WNYNY  C                 ATD VLSF++A+WFWMT Q PKPSCH+VLT  W+PSA D   GRLPGY    N+++
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPC--GEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLN 199          

HSP 2 Score: 23.8682 bits (50), Expect = 1.000e-60
Identity = 10/25 (40.00%), Postives = 14/25 (56.00%), Query Frame = 1
Query:  751 GGIECGPRWNDPVPNRIGSLTTFRG 825
            GG+ECG   N  V +R+G    + G
Sbjct:  200 GGLECGKGPNPQVADRLGFFRRYCG 224          
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 1.415e-59
Identity = 108/202 (53.47%), Postives = 134/202 (66.34%), Query Frame = 3
Query:  156 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWRDAPGGEYAWGYCFISEISPPSPHC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWMTAQPPKPSCHEVLTDEWKPSANDLNPGRLPGYRPTHNIIH 749
            G+L  IIS   F+D+L +RND  CPARGFYTY+AFI AAK+FP FG +G+   R +E+AAFF  T HETTGGW  AP G Y+WGYCF  E +P S +C  +  +PC    +YYGRGP+QL+WNYNY  C                 A D V++F++AIWFWMTAQPPKPSCH V+  +W+PS  D   GRLPGY    NII+
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLC--GRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIIN 283          

HSP 2 Score: 21.9422 bits (45), Expect = 1.415e-59
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 1
Query:  751 GGIECGPRWNDPVPNRIG 804
            GG+ECG   +  V +RIG
Sbjct:  284 GGLECGRGQDGRVADRIG 301          
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.416e-59
Identity = 115/226 (50.88%), Postives = 143/226 (63.27%), Query Frame = 3
Query:   84 GGPARNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWRDAPGGEYAWGYCFISEISPPSPHCNL--NYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWMTAQPPKPSCHEVLTDEWKPSANDLNPGRLPGYRPTHNIIH 749
            G     CG G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   R REIAAF   T HETTGGW  AP G YAWGYCF+ E + PS +C+    +PC    +YYGRGPIQ++WNYNY +C                 ATD V+SF+SA+WFWMTAQ PKPS H+V+T  W PS+ D+   RLPGY    NII+
Sbjct:   52 GSTTDYCGPG--CQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERN-PSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQC--GRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIIN 272          

HSP 2 Score: 22.3274 bits (46), Expect = 1.416e-59
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 1
Query:  751 GGIECGPRWNDPVPNRIG 804
            GG+ECG   +  V +RIG
Sbjct:  273 GGLECGRGQDSRVQDRIG 290          
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.416e-59
Identity = 112/211 (53.08%), Postives = 139/211 (65.88%), Query Frame = 3
Query:  135 TGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTG--GWRDAPGGEYAWGYCFISEISPPSPHC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWMTAQPPKPSCHEVLTDEWKPSANDLNPGRLPGYRPTHNIIH 749
            +G     G L  +ISRE F  +L +RND  CPARGFYTYDAFI AA++FPAF  +G++  R REIAAF A T HETTG  GW  AP G YAWGYC+  E++PPS +C  + NYPC  GK Y+GRGP+QL+WNYNY +C                 ++DP +SF+SA WFWMT Q PKPSCH V+   W PS++D   GR+PGY    NII+
Sbjct:   65 SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQC--GRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIIN 272          

HSP 2 Score: 29.261 bits (64), Expect = 1.416e-59
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  751 GGIECGPRWNDPVPNRIG 804
            GG+ECG  WN  V +RIG
Sbjct:  273 GGLECGKGWNAQVEDRIG 290          
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.416e-59
Identity = 113/216 (52.31%), Postives = 142/216 (65.74%), Query Frame = 3
Query:  120 CGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTG--GWRDAPGGEYAWGYCFISEISPPSPHC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWMTAQPPKPSCHEVLTDEWKPSANDLNPGRLPGYRPTHNIIH 749
            C  + +G G D G L  +I+RE F+ +L +RND  CPARGFYTYDAFI AAK+FPAF  +G++  R RE+AAF A T HETTG  GW  AP G Y WGYC+  E++ P+ +C  + NYPC  GK Y+GRGP+QLTWNYNY +C                 ATDP +SF+SA WFWMT Q PKPSCH+V+   W PS +D   GR+PG+    NII+
Sbjct:   58 CQSQCSGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELN-PADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQC--GRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIIN 269          

HSP 2 Score: 29.261 bits (64), Expect = 1.416e-59
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  751 GGIECGPRWNDPVPNRIG 804
            GG+ECG  WN  V +RIG
Sbjct:  270 GGLECGQGWNAKVEDRIG 287          
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.438e-59
Identity = 114/226 (50.44%), Postives = 141/226 (62.39%), Query Frame = 3
Query:   84 GGPARNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWRDAPGGEYAWGYCFISEISPPSPHC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWMTAQPPKPSCHEVLTDEWKPSANDLNPGRLPGYRPTHNIIH 749
            G  A  CGSG       TG      ++G++I+R MF D+L +RN+  CP +GFYTYDAFI AAKAFP FG +G+ T R REIAAF A T HETTGGW  AP G YAWGYC++ E   P  +C  +  +PC    KYYGRGPIQ+++NYNY +                  ATD V+SF++A WFWMT Q PKPSCH V+T  W PS  D + GRLPG+    NII+
Sbjct:   45 GNTADYCGSGCQSQCSSTG------DIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQA--GKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIIN 262          
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.879e-59
Identity = 108/202 (53.47%), Postives = 134/202 (66.34%), Query Frame = 3
Query:  156 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWRDAPGGEYAWGYCFISEISPPSPHC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWMTAQPPKPSCHEVLTDEWKPSANDLNPGRLPGYRPTHNIIH 749
            G+L  IISR  F+D+L +RND  CPARGFYTYDAFI AAK+FP FG +G+   R +EIAAFF  T HETTGGW  AP G Y+WGYCF  E +P S +C  +  +PC     YYGRGP+QL+WNYNY +C                 + DPV++F++AIWFWMT Q PKPSCH V+  +W+PS  D   GR+PGY    NII+
Sbjct:   69 GDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQC--GRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIIN 268          
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.334e-59
Identity = 115/225 (51.11%), Postives = 143/225 (63.56%), Query Frame = 3
Query:  102 CGS-----GVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWRDAPGGEYAWGYCFISEISPPSPHCNL--NYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWMTAQPPKPSCHEVLTDEWKPSANDLNPGRLPGYRPTHNIIH 749
            CGS     G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   R REIAAF   T HETTGGW  AP G YAWGYCF+ E + PS +C+    +PC    +YYGRGPIQ++WNYNY +C                 ATD V+SF+SA+WFWMTAQ PKPS H+V+T  W PS+ D+   RLPGY    NII+
Sbjct:   50 CGSTTDYCGKDCQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERN-PSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQC--GRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIIN 271          

HSP 2 Score: 22.3274 bits (46), Expect = 5.334e-59
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 1
Query:  751 GGIECGPRWNDPVPNRIG 804
            GG+ECG   +  V +RIG
Sbjct:  272 GGLECGRGQDSRVQDRIG 289          
BLAST of DY260020 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.541e-58
Identity = 108/219 (49.32%), Postives = 139/219 (63.47%), Query Frame = 3
Query:  105 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAPTGHETTGGWRDAPGGEYAWGYCFISEISPPSPHC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFQSAIWFWMTAQPPKPSCHEVLTDEWKPSANDLNPGRLPGYRPTHNIIH 749
            G G   G    G G  GG +  ++S+E+FE LL +RND  CPARGFYTYDA + AA AFP F  +G++  R RE+AAF   T HETTGGW  AP G Y+WGYCF  EI   + +C  +  +PC    KY+GRGPIQL++NYNY                    A+DPV+SF++A+WFWMT Q PKPSCH+V+T +W PS+ D+  GR+PGY    NII+
Sbjct:   67 GGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNY--GPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIIN 283          

HSP 2 Score: 25.0238 bits (53), Expect = 1.541e-58
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  751 GGIECGPRWNDPVPNRIG 804
            GG+ECG   +D V NRIG
Sbjct:  284 GGLECGFGPDDRVANRIG 301          
The following BLAST results are available for this feature:
BLAST of DY260020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI6_POPTR5.840e-6153.98Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIT_CARPA1.000e-6056.06Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIB_ARATH1.415e-5953.47Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIT_PHAVU1.416e-5950.88Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI1_GOSHI1.416e-5953.08Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI1_THECC1.416e-5952.31Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIB_VITVI1.438e-5950.44Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI2_BRANA1.879e-5953.47Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI5_PHAVU5.334e-5951.11Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI9_ORYSJ1.541e-5849.32Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YP18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260020 ID=DY260020; Name=DY260020; organism=Citrus clementina; type=EST; length=1058bp
ATTGATATCCTACATCTGTTGCTTTCCAAATGAGGCTTATTGCCTCCTTA
CTAGTTTTCTCCCCAGTTTTATCTTTCCTACTAGGAGGCCCCGCCCGGAA
TTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACCGGCCACGGGACGG
ATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTG
CTTCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCTACACTTA
TGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTG
GAAATGAAACCATGCGTACAAGAGAAATTGCTGCCTTTTTTGCCCCAACT
GGCCATGAAACTACTGGGGGATGGCGCGATGCACCTGGTGGAGAATATGC
TTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCCGTCCCCCCACTGTA
ATCTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAA
CTCACTTGGAATTACAATTACTTACGGTGCGGAGAAGACCTAGGGCTAGG
AGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTACTAT
CATTCCAGTCAGCCATCTGGTTCTGGATGACCGCACAGCCCCCAAAGCCA
TCCTGCCACGAAGTCCTTACCGACGAATGGAAACCATCAGCCAATGACCT
AAACCCCGGCCGGCTTCCGGGATACCGTCCAACCCACAATATAATCCACC
GGTGGAATTGAATGTGGCCCAAGGTGGAATGACCCTGTACCTAACCGTAT
TGGGTCCTTAACCACTTTCCGGGGGCAAGTTTGGGATTCACCCCGGTTAC
CACCTGAATTGCACCCCCCACCCCCCCTTCGCCCCTATTCCAGGGCCCCA
ACCCATGTGACCCCCCCCCGACCAACCCTTTAATCAAACTACACCCTAAT
AAAAACCCCCCCCTAAAAAAACCTTTCCCTCCTCCCCCCGCGCCGGCGCA
CCCACCCAATTCGTCCCCCCCCTCTTTTGCAAACACACTAAAAAACACCC
GCGGCCCC
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