DY260028

Overview
NameDY260028
Unique NameDY260028
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1099
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1396 contig Ccv1_Contig1396:1..1099. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260028 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 8.979e-44
Identity = 85/102 (83.33%), Postives = 94/102 (92.16%), Query Frame = 2
Query:    2 AWNPYLQKSNETKQLVVVDFTASWCGPCPFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELPQTIAKHLATAS 307
            AWN  LQK N+TK L+VVDFTASWCGPC FIAPFLAELAKKLPNV FLKVDVDELK+VA +WAVE+MPTFMFLKEGKI+DKVVG+KK+EL QTIAKH+ATAS
Sbjct:   16 AWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMATAS 117          
BLAST of DY260028 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 4.927e-42
Identity = 81/98 (82.65%), Postives = 90/98 (91.84%), Query Frame = 2
Query:    5 WNPYLQKSNETKQLVVVDFTASWCGPCPFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELPQTIAKHLA 298
            WN  LQK+NE+K LVVVDFTASWCGPC FIAPF A+LAKKLPNVLFLKVD DELKSVA+DWA++AMPTFMFLKEGKI+DKVVG+KK+EL  TIAKHLA
Sbjct:   17 WNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114          
BLAST of DY260028 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.872e-41
Identity = 81/102 (79.41%), Postives = 91/102 (89.22%), Query Frame = 2
Query:    2 AWNPYLQKSNETKQLVVVDFTASWCGPCPFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELPQTIAKHLATAS 307
            AWN +LQK  + K+L+VVDFTASWCGPC FIA F AELAKK+P V FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG+KK+EL QTIAKH+++ S
Sbjct:   15 AWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISSTS 116          
BLAST of DY260028 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 7.362e-38
Identity = 72/101 (71.29%), Postives = 89/101 (88.12%), Query Frame = 2
Query:    5 WNPYLQKSNETKQLVVVDFTASWCGPCPFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELPQTIAKHLATAS 307
            WN Y +K  ETK+LVVVDFTASWCGPC FIAP LA++AKK+P+V+FLKVDVDELK+V+ +W+VEAMPTF+F+K+GK VD+VVG+KKEEL QTI KH A A+
Sbjct:   23 WNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAAPAT 123          
BLAST of DY260028 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.259e-29
Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 2
Query:    5 WNPYLQKSNETKQLVVVDFTASWCGPCPFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELPQTIAKHLATASAQ*VITIP 331
            W   LQ++ +TK+LV VDFTA+WCGPC  I P   EL+KK P + FLKVDVDEL+ VA +W VEAMPTF+F+K+GK VDKVVG+KK++L + +A  LA A+     T+P
Sbjct:   15 WRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVAA-LAAAATTTEATLP 122          
BLAST of DY260028 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.644e-29
Identity = 56/96 (58.33%), Postives = 79/96 (82.29%), Query Frame = 2
Query:    5 WNPYLQKSNETKQLVVVDFTASWCGPCPFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELPQTIAKH 292
            WN  ++ +NE+K+L+V+DFTASWC PC FIAP  AE+AKK  NV+F K+DVDEL++VA ++ VEAMPTF+F+KEG I+D+VVG+ K+E+ + + KH
Sbjct:   16 WNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of DY260028 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.049e-28
Identity = 57/98 (58.16%), Postives = 74/98 (75.51%), Query Frame = 2
Query:   17 LQKSNETKQLVVVDFTASWCGPCPFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELPQTIAKHLATASA 310
            + K+ E  ++V++DFTASWCGPC FIAP  AE AKK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVG++K++L  TI KH+   +A
Sbjct:   21 MTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of DY260028 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.049e-28
Identity = 57/98 (58.16%), Postives = 74/98 (75.51%), Query Frame = 2
Query:   17 LQKSNETKQLVVVDFTASWCGPCPFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELPQTIAKHLATASA 310
            + K+ E  ++V++DFTASWCGPC FIAP  AE AKK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVG++K++L  TI KH+   +A
Sbjct:   21 MTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of DY260028 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 6.907e-28
Identity = 56/98 (57.14%), Postives = 74/98 (75.51%), Query Frame = 2
Query:    5 WNPYLQKSNETKQLVVVDFTASWCGPCPFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELPQTIAKHLA 298
            W   ++++N  K+LVV+DFTASWCGPC  +AP  A+LAKK P  +FLKVDVDELK +A  ++VEAMPTF+F+KEG + D+VVG+ KEEL   +  H A
Sbjct:   29 WTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLHAA 126          
BLAST of DY260028 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.625e-27
Identity = 54/96 (56.25%), Postives = 76/96 (79.17%), Query Frame = 2
Query:    5 WNPYLQKSNETKQLVVVDFTASWCGPCPFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELPQTIAKH 292
            WN   QK+ ++ +L+V+DFTASWCGPC  I P+++ELAKK P+V F KVDVD+LK VA ++ VEAMP+F+ LKEG+ V+++VG++K+EL   IA H
Sbjct:   16 WNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111          
The following BLAST results are available for this feature:
BLAST of DY260028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
TRXH_RICCO8.979e-4483.33Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH4.927e-4282.65Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC1.872e-4179.41Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_TOBAC7.362e-3871.29Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH_PICMA1.259e-2956.88Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH5_ARATH1.644e-2958.33Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_ORYSJ4.049e-2858.16Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI4.049e-2858.16Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH_WHEAT6.907e-2857.14Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH_FAGES2.625e-2756.25Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YA04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260028 ID=DY260028; Name=DY260028; organism=Citrus clementina; type=EST; length=1099bp
GGCCTGGAACCCTTATCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTG
TTGTTGATTTCACTGCTTCGTGGTGCGGACCATGCCCTTTCATTGCTCCT
TTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGT
TGATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCA
TGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTT
GGATCAAAGAAAGAGGAACTGCCGCAGACTATTGCCAAGCATCTGGCAAC
TGCCTCTGCCCAATAAGTTATAACTATCCCTCCTGCCCTTTGGCTTTAGA
GGCTATAGACCCTCCAATATATGCTATCAGTCCGTAATTTACTTATTAAA
GTGGTTATGGGATTGGGTTTGCTTGTGTGGTTGAATATTCCGCAATTTAC
CGGTCCAAGAAACCCCCACCGGGGTCCTTACAAAAAATTTAATTTCAAAT
TTTTGGGTAAAAAAAAAAAAAAAACAAAACCCCCACCTTCCTTCGCCAAA
TCCGGCCTTATAAAAAACCCTCGCTTATCCATTTTGTTCCCCCCAGCAGG
GCCCCCCTCCCCCCACAACAACTCCCTCTTTTCTCACCCCGCTAAAAACC
CCCCAAAAAGAGCCCCAACAACACGGCCCCAAACCCTTTCTCCCGCCACC
CCCGGTGCCCGGCCTCCCAAACTTCCAATTCTACCTGCCAAAAAAAAAAA
ATATATCATTTAGTTACAAAAACCCCCCCGACGCCCTCAAACAACCCTGC
CTTTTTTCCATCCCCGATTTCACACTACCCCCTTTCTTTGAAACCCCCTT
CTCCTGCCCCCGGCGCCAACACCCCCCCCCCGGCCCCCCCCCCGGAGGGC
ACGGCCCCCGGGTTCGCCCCCCCATTCCCCCCCCCCTCCCCCACCCACAA
ACCCTCCTTAAATCCCCCCCCCCCCCACATACGGGCGGCTCCTGCGCCAC
ACCCACCCCCATCCCTCCCCCTCCCACCGGCTCCACGCGTCCACTACACT
CTCTCCTTCTCTTTCCTCACTCATTCTCATCACCACTCCACCTATTCCC
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