DY260034

Overview
NameDY260034
Unique NameDY260034
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1063
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1397 contig Ccv1_Contig1397:1..1063. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260034 vs. ExPASy Swiss-Prot
Match: UXS1_DANRE (UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 5.718e-48
Identity = 95/135 (70.37%), Postives = 107/135 (79.26%), Query Frame = 2
Query:    2 VTGGAGFIRSPLVDQLMENEKNEVIVVDNHFPGSKDHLRKWIRPPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 406
            +TGGAGF+ S L D+LM  + +EV VVDN F G K ++  WI    FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP VHPQ+E YWG+VNPIG
Sbjct:   91 ITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQNEDYWGHVNPIG 224          
BLAST of DY260034 vs. ExPASy Swiss-Prot
Match: UXS1_XENTR (UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 7.468e-48
Identity = 95/135 (70.37%), Postives = 106/135 (78.52%), Query Frame = 2
Query:    2 VTGGAGFIRSPLVDQLMENEKNEVIVVDNHFPGSKDHLRKWIRPPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 406
            +TGGAGF+ S L D+LM  + +EV VVDN F G K ++  WI    FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP VHPQ E YWG+VNPIG
Sbjct:   94 ITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEEYWGHVNPIG 227          
BLAST of DY260034 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 7.468e-48
Identity = 95/135 (70.37%), Postives = 106/135 (78.52%), Query Frame = 2
Query:    2 VTGGAGFIRSPLVDQLMENEKNEVIVVDNHFPGSKDHLRKWIRPPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 406
            +TGGAGF+ S L D+LM  + +EV VVDN F G K ++  WI    FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP VHPQ E YWG+VNPIG
Sbjct:   93 ITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIG 226          
BLAST of DY260034 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 7.468e-48
Identity = 95/135 (70.37%), Postives = 106/135 (78.52%), Query Frame = 2
Query:    2 VTGGAGFIRSPLVDQLMENEKNEVIVVDNHFPGSKDHLRKWIRPPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 406
            +TGGAGF+ S L D+LM  + +EV VVDN F G K ++  WI    FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP VHPQ E YWG+VNPIG
Sbjct:   93 ITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIG 226          
BLAST of DY260034 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 7.468e-48
Identity = 95/135 (70.37%), Postives = 106/135 (78.52%), Query Frame = 2
Query:    2 VTGGAGFIRSPLVDQLMENEKNEVIVVDNHFPGSKDHLRKWIRPPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 406
            +TGGAGF+ S L D+LM  + +EV VVDN F G K ++  WI    FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP VHPQ E YWG+VNPIG
Sbjct:   93 ITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIG 226          
BLAST of DY260034 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 7.468e-48
Identity = 95/135 (70.37%), Postives = 106/135 (78.52%), Query Frame = 2
Query:    2 VTGGAGFIRSPLVDQLMENEKNEVIVVDNHFPGSKDHLRKWIRPPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 406
            +TGGAGF+ S L D+LM  + +EV VVDN F G K ++  WI    FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP VHPQ E YWG+VNPIG
Sbjct:   93 ITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIG 226          
BLAST of DY260034 vs. ExPASy Swiss-Prot
Match: GALE_METJA (Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii GN=MJ0211 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.509e-11
Identity = 51/159 (32.08%), Postives = 85/159 (53.46%), Query Frame = 2
Query:    2 VTGGAGFIRSPLVDQLMENEKNEVIVVDNHFPGSKDHLRKWIRPPRFELIRHDVTEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGE 454
            VTGGAGFI S +VD+L+EN   +VI++DN   G+K+++      P+ E +  D+ +  L E      V+ + H A   +      NPV     NV+GT+N+L + ++  +   +  +S   VYG+P   P DE++   +NP+  +      G+ K +GE
Sbjct:    4 VTGGAGFIGSHIVDKLIEN-NYDVIILDNLTTGNKNNIN-----PKAEFVNADIRDKDLDEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASSGGAVYGEPNYLPVDENH--PINPLSPY------GLSKYVGE 148          
The following BLAST results are available for this feature:
BLAST of DY260034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
UXS1_DANRE5.718e-4870.37UDP-glucuronic acid decarboxylase 1 OS=Danio rerio... [more]
UXS1_XENTR7.468e-4870.37UDP-glucuronic acid decarboxylase 1 OS=Xenopus tro... [more]
UXS1_RAT7.468e-4870.37UDP-glucuronic acid decarboxylase 1 OS=Rattus norv... [more]
UXS1_PONAB7.468e-4870.37UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli... [more]
UXS1_MOUSE7.468e-4870.37UDP-glucuronic acid decarboxylase 1 OS=Mus musculu... [more]
UXS1_HUMAN7.468e-4870.37UDP-glucuronic acid decarboxylase 1 OS=Homo sapien... [more]
GALE_METJA2.509e-1132.08Putative UDP-glucose 4-epimerase OS=Methanocaldoco... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YA11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260034 ID=DY260034; Name=DY260034; organism=Citrus clementina; type=EST; length=1063bp
GGTTACTGGAGGAGCCGGATTTATCCGATCCCCCCTTGTGGACCAGTTGA
TGGAAAATGAAAAGAACGAGGTGATTGTAGTTGATAACCACTTCCCTGGC
TCCAAGGACCACCTAAGGAAATGGATCCGTCCCCCCAGATTTGAGCTTAT
TCGTCATGATGTGACTGAGCCATTGTTGATCGAGGTTGATCAAATTTATC
ACCTTGCTTGTCCTGCCTCCCCAATCTTCTACAAATACAACCCTGTAAAG
ACTATAAAGACAAATGTGATTGGTACATTGAACATGCTGGGACTTGCCAA
GCGAGTCGGAGCTAGGATTTTGCTTACATCAACTTCAGAGGTTTACGGAG
ATCCTCTTGTGCATCCCCAGGATGAGAGCTATTGGGGAAATGTGAACCCA
ATTGGTATGTTTTCTTTTGTGCTGAAGGATGGCATAATGAAATTAATTGG
TGAACTTGGAGGATAACTTGTTTGCAATAATGTGACAAATTTTGGGGAAT
ATTTGAATGTTAAAGATTTATGTGAACCACTGACGATTTTTCCCATTTGC
TTCTCCTATATGTCTATATGAAACTAATTTAGAGGACGAAAATCCTTCTT
CTTCCACTGCCTTTTAAAGTAAGTATCATTTTGTATCATGTGCAAAATGT
TGCAGCCTCATTCCTTGCTTCATTACTTTTTCGAGAATCAAACTCTTTGA
AACGTGACACTTTTGCAGTTCTTGGTGGCAATATGTTCCACTTACCAATT
AAATCACCTTGTAATTTCCTATAATTATTCCCCTTTTTTTGGTCACCCCG
AATCANGAGTTGCCATGATGAGGGGAAAAGGATTTGCCGAAACTTTNGAT
GTTTGACCACCATCCGCCAGCCTGGGATTGAGAATAGGGATGCTAGGATT
TTCCCCCCCCAGGACCCCCCCCTGAATATGGATGATGGTCCCTGTGGCCC
CCATTTTATTTGCCCACCCATCCCTGGCCCAACCCTTGACCGGTCCACCC
CCCGGGAACCCAACCCCCTTATTTCCCGTTATGTCCCCCCAAACGGGGTT
GAAGGGCCCTTTT
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