DY260036

Overview
NameDY260036
Unique NameDY260036
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1053
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260036 vs. ExPASy Swiss-Prot
Match: ICR2_ARATH (Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.540e-40
Identity = 100/280 (35.71%), Postives = 169/280 (60.36%), Query Frame = 1
Query:    1 EEARAVELQKVSQETDRSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNRSGDYDLGQKIKENQDTMXXXXXXXXXXXXXXXVGRLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEADLQKAKSDIEELKAT*WIKKLNCRV 840
            E++R  EL+K+SQE D++ QSEL+A+Q QH++DSAAL+S +NE+Q+LKAQ         ++++N E+  +EL        ET+SL+E ++ +L ++KE E QA  +   T  QLE A L++E LR++GMK  EA +S+ +ELE+S++ +  LE LV +LE +          N +GD    +++KE  +                 + +L+SA+E+ E + +E  IQST++I++A+EQ++++K     RE EL  +L+K K++ + L      K+   R+
Sbjct:  125 EDSRIDELRKLSQERDKAWQSELEAMQRQHAMDSAALSSTMNEVQKLKAQL--------SESENVENLRMELN-------ETLSLVEKLRGELFDAKEGEAQAHEIVSGTEKQLEIANLTLEMLRSDGMKMSEACNSLTTELEQSKSEVRSLEQLVRQLEEEDEARG-----NANGDSSSVEELKEEINV------------ARQEISQLKSAVEVTERRYHEEYIQSTLQIRTAYEQVDEVKSGYAQREAELGEELKKTKAERDSLHERLMDKEAKLRI 372          
BLAST of DY260036 vs. ExPASy Swiss-Prot
Match: ICR3_ARATH (Interactor of constitutive active ROPs 3 OS=Arabidopsis thaliana GN=ICR3 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.460e-35
Identity = 102/300 (34.00%), Postives = 167/300 (55.67%), Query Frame = 1
Query:   16 VELQKVSQETDRSCQSELQAIQNQ-------HSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLE---ADTSNANRNLSQNRSGDYDLGQKIKENQDTMXXXXXXXXXXXXXXXVGRLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEADLQKAKSDIEELKAT*WIKKLNCRVFQKKMRGLPMPLDKN 885
            VE   + +ETD++     Q++  +        + + A LA+  +E++QLK Q EMVA SEA   K AE  + E+Q L+GNL++T+  +EN +NQL++ + SE + +ALA ETL QLE AK +VE L+++G KA+E+Y  +A ELE+S++R+  LE LV+KL+   AD  N    L      DY+  ++ + N+                  V RLR+ALE ++ K  EG ++++ +++                + EL+++L+ AKS+I+ELKA    K+   +   ++     M L KN
Sbjct:  129 VETSALEEETDKTGSLVFQSVSQECDWEFSATAGERAGLAAVAHEIRQLKLQIEMVASSEAGHVKQAELYNSEVQLLRGNLMDTLFHVENFRNQLKDCEISEAETEALATETLRQLENAKKAVEELKSDGTKAVESYKKMAVELEQSKSRMVWLEALVNKLQNNPADLENHEILLK-----DYESLRRGESNE-------MDEEVSSLRCEVERLRAALEASDKKDQEGNVEASSRLRI---------------QAELQSELKIAKSEIDELKARLMDKETELQFISEERDNFSMKLMKN 401          
BLAST of DY260036 vs. ExPASy Swiss-Prot
Match: ICR5_ARATH (Interactor of constitutive active ROPs 5 OS=Arabidopsis thaliana GN=ICR5 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.499e-16
Identity = 81/288 (28.12%), Postives = 137/288 (47.57%), Query Frame = 1
Query:   49 RSCQSELQAIQNQHSIDSAALASALNELQQ-LKAQFEMVAESEAAQTKNAESAH-LELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNRSGDYDLGQKIKENQDTMXXXXXXXXXXXXXXXVGRLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEADLQKAKSDIEELKAT*WIKKLNCRVFQKKMRGLPMPLDKNLMVPRGS 906
            RS +  L  IQ + +     L S +++LQ+ LK   E +  SEA + +  E A   + Q +  N  E   + E  K      K  +++ +A+ R+  +       ++  ++    K  E+     SELE+S+  +  LE LV +LE +  N         S D     +++E ++ M               + +L+SA+E AET+  E  IQST++I+SA+EQ E +K +   RE EL  +L + K +IE L+     K+L  +V + +  G    L+ +LM  RGS
Sbjct:   56 RSARIPLNEIQKKRTGRIPELESTISQLQEELKKAKEELNRSEALKREAQEEAEDAKHQLMDINASEDSRIEELRKLSQERDKTWQSELEAMQRQHGMDSTALSSAINEVQKLKSKLFES----ESELEQSKYEVRSLEKLVRQLEEERVN---------SRDSSSSMEVEELKEAMNLSRQE---------ITQLKSAVEAAETRYQEEYIQSTLQIRSAYEQTEAVKSRYSQREAELTEELNRTKDEIEGLR-----KELMEKVKEDESTGDLKKLESDLMEVRGS 316          

HSP 2 Score: 80.1073 bits (196), Expect = 2.394e-14
Identity = 64/194 (32.99%), Postives = 111/194 (57.22%), Query Frame = 1
Query:    1 EEARAVELQKVSQETDRSCQSELQAIQNQHSIDSAALASALNELQQLKAQ-FEMVAESEAA--QTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD-TSNANRNLSQNRSGDYDLGQKIKENQDT 570
            E++R  EL+K+SQE D++ QSEL+A+Q QH +DS AL+SA+NE+Q+LK++ FE  +E E +  + ++ E    +L+  + N  ++ S ME     + E KE    A  L+R+ + QL++A  + E    E  + I++   I S  E++      ++   S+ EA+ T   NR   +      +L +K+KE++ T
Sbjct:  122 EDSRIEELRKLSQERDKTWQSELEAMQRQHGMDSTALSSAINEVQKLKSKLFESESELEQSKYEVRSLEKLVRQLEEERVNSRDSSSSME-----VEELKE----AMNLSRQEITQLKSAVEAAETRYQE--EYIQSTLQIRSAYEQTEA----VKSRYSQREAELTEELNRTKDEIEGLRKELMEKVKEDEST 300          
The following BLAST results are available for this feature:
BLAST of DY260036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ICR2_ARATH2.540e-4035.71Interactor of constitutive active ROPs 2, chloropl... [more]
ICR3_ARATH2.460e-3534.00Interactor of constitutive active ROPs 3 OS=Arabid... [more]
ICR5_ARATH1.499e-1628.13Interactor of constitutive active ROPs 5 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YA17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260036 ID=DY260036; Name=DY260036; organism=Citrus clementina; type=EST; length=1053bp
GAGGAAGCTCGCGCTGTTGAGCTTCAAAAGGTCTCCCAAGAAACAGATCG
ATCATGCCAATCTGAGCTTCAGGCTATCCAGAATCAGCATTCAATTGACT
CAGCAGCCTTGGCCTCTGCCTTGAATGAGCTCCAGCAACTTAAGGCTCAG
TTTGAAATGGTAGCTGAATCTGAGGCTGCACAGACCAAGAATGCAGAATC
AGCACATTTGGAGCTCCAAAGCTTGAAAGGAAACCTGATAGAAACTATTT
CTCTCATGGAAAACATGAAAAATCAGCTAAGAGAAAGCAAAGAATCGGAA
ACTCAGGCCCAAGCATTGGCCAGGGAAACTCTGCTTCAACTTGAAACTGC
AAAACTATCTGTAGAGGCACTCAGAGCAGAAGGCATGAAAGCCATTGAAG
CTTACAGCTCCATTGCTTCAGAGTTAGAACGGTCGAGGACGCGCATAAAC
TTGTTAGAAGGGCTTGTTAGTAAACTTGAAGCTGACACCAGTAATGCCAA
TAGAAATCTTTCACAAAATCGTTCTGGTGATTATGACCTTGGGCAAAAAA
TTAAAGAAAATCAAGACACCATGGAGTCAAAACATCTTGAAGAGGAGCTT
TCTTCTTTGAAGTCAGAAGTAGGACGGCTGAGATCTGCTTTAGAAATTGC
TGAGACTAAACTGAATGAAGGACAAATCCAGAGCACAGTGAAGATAAAAA
GTGCTTTTGAACAGTTGGAGCAGATAAAGCATCAGTCAGGCCTAAGGGAG
GTTGAACTGGAAGCAGACCTACAGAAGGCAAAATCTGACATTGAGGAGTT
GAAGGCCACCTGATGGATAAAGAAACTGAACTGCAGGGTATTTCAGAAGA
AAATGAGGGGGCTACCCATGCCACTCGACAAAAATCTAATGGTGCCGAGG
GGATCCTCAACTGAACCATGATCTGCGGAAACCTGCACAGCCTGTTTGAA
GATTTGAAAGGCAAATTTTAAGGGATAAGGGAAACAGAACTGGCAAAATA
TTTTCGAAGGGAAAAGGAAAAGGTGGAAACCTGGGAAATCACCCAAAAGG
GAA
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