DY260037

Overview
NameDY260037
Unique NameDY260037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1033
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260037_ssr218 microsatellite DY260037_ssr218:218..227. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260037 vs. ExPASy Swiss-Prot
Match: SERC3_PONAB (Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.567e-13
Identity = 53/187 (28.34%), Postives = 85/187 (45.45%), Query Frame = 1
Query:  193 RIAYCGLFALSLIVSWIL-REVAAPLMEKLPWINH----FHKTPSREWFETD------AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP-NEIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNETWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLF 705
            R+ Y  +  LS +VS+I+ R+     ++K+P         H+       + D      AV R+S    +FF + S+LM  VK  KDPR ++H+G W  KI     +++  F++P     S +  +   G+               H WNE+WV   E+     WY ALL  +   Y+L+    GLL+
Sbjct:   39 RLIYAFILLLSTVVSYIMQRKEMETYLKKIPGFCEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDPRAAVHNGFWFFKIAALIGIMVGSFYIPGGYFSSVWFVVGMIGAALFILIQLVLLVDFAHSWNESWVNRMEEGNPRLWYAALLSFTSAFYILSIICVGLLY 225          
BLAST of DY260037 vs. ExPASy Swiss-Prot
Match: SERC3_BOVIN (Serine incorporator 3 OS=Bos taurus GN=SERINC3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.353e-13
Identity = 43/129 (33.33%), Postives = 66/129 (51.16%), Query Frame = 1
Query:  334 AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP-NEIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNETWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLF 705
            AV R+S    +FF   S+LM+ VK  KDPR ++H+G W  KI     +++  F++P     + +  I   G+               H WNE+WV   E+     WY ALL V+ + Y+L+  F+GLL+
Sbjct:   96 AVYRISFALAVFFFAFSLLMLNVKTSKDPRAAIHNGFWFFKIAAIVGVMVGSFYIPGGHFNTAWFVIGMVGAAFFILIQLVLLVDFAHSWNESWVNRMEEGNPKCWYAALLSVTSLFYILSIIFAGLLY 224          
BLAST of DY260037 vs. ExPASy Swiss-Prot
Match: SERC3_HUMAN (Serine incorporator 3 OS=Homo sapiens GN=SERINC3 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.707e-12
Identity = 52/187 (27.81%), Postives = 84/187 (44.92%), Query Frame = 1
Query:  193 RIAYCGLFALSLIVSWIL-REVAAPLMEKLPWINH----FHKTPSREWFETD------AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP-NEIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNETWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLF 705
            R+ Y  +  LS +VS+I+ R+     ++K+P         H+       + D      AV R+S    +FF + S+LM  VK  KD R ++H+G W  KI     +++  F++P     S +  +   G+               H WNE+WV   E+     WY ALL  +   Y+L+    GLL+
Sbjct:   39 RLIYAFILLLSTVVSYIMQRKEMETYLKKIPGFCEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDLRAAVHNGFWFFKIAALIGIMVGSFYIPGGYFSSVWFVVGMIGAALFILIQLVLLVDFAHSWNESWVNRMEEGNPRLWYAALLSFTSAFYILSIICVGLLY 225          
BLAST of DY260037 vs. ExPASy Swiss-Prot
Match: SERC3_MOUSE (Serine incorporator 3 OS=Mus musculus GN=Serinc3 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.991e-11
Identity = 39/129 (30.23%), Postives = 60/129 (46.51%), Query Frame = 1
Query:  334 AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP-NEIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNETWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLF 705
            AV R++    +FF    +LM+ VK  KDPR ++H+G W  KI     ++I  F++P       +      G+               H WNE WV   E+     WY ALL  + + Y+L+  F+ LL+
Sbjct:   97 AVYRINFAVAIFFFAFFLLMLKVKTSKDPRAAVHNGFWFFKIAAIIGIMIGSFYIPGGSFTEVWFVAGMLGASFFIIIQLVLLVDMAHSWNELWVNRMEEGNPRLWYAALLSFTSLFYILSIVFAALLY 225          
The following BLAST results are available for this feature:
BLAST of DY260037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SERC3_PONAB2.567e-1328.34Serine incorporator 3 OS=Pongo abelii GN=SERINC3 P... [more]
SERC3_BOVIN3.353e-1333.33Serine incorporator 3 OS=Bos taurus GN=SERINC3 PE=... [more]
SERC3_HUMAN3.707e-1227.81Serine incorporator 3 OS=Homo sapiens GN=SERINC3 P... [more]
SERC3_MOUSE6.991e-1130.23Serine incorporator 3 OS=Mus musculus GN=Serinc3 P... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YA18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260037 ID=DY260037; Name=DY260037; organism=Citrus clementina; type=EST; length=1033bp
TATTCTTCGCTTATCGCTTGCGATCATCGCCTTTTCTATTTCACTTTCCC
TTTCTCCTTCAAATTCAATCAAATATCCCAGTTTGTGAGAGAAGAGAAGA
TGTGGGCGGCGTCTTGTCTTGCGTCGTGCTGTGCGGCGTGCGCGTGTGAC
GCGTGCCGCTCGGCTGTGTCGGGGATCAGCAGGAGGTCAGCTAGGATTGC
TTACTGCGGGCTGTTTGCTCTCTCTCTGATCGTTTCGTGGATTCTTCGTG
AAGTCGCCGCTCCGCTCATGGAGAAGCTCCCTTGGATTAATCATTTTCAT
AAGACACCTAGCAGGGAGTGGTTTGAAACTGATGCTGTGCTGCGAGTTAG
CTTGGGAAATTTTCTCTTTTTCACTATTTTGTCAATTTTAATGGTTGGTG
TGAAAAATCAGAAAGATCCCCGTGATAGCTTGCACCATGGTGGATGGATG
ATGAAAATTATTTGTTGGTGCCTTCTGGTGATCTTTATGTTTTTCCTTCC
AAATGAGATTGTCAGCTTCTATGAGTCAATATCAAAGTTTGGCTCGGGTT
TGTTTCTTCTTGTTCAAGTTGTCCTTTTATTGGACTTTGTTCACAGATGG
AATGAGACGTGGGTTGGATATGATGAGCAGTTCTGGTATGTTGCCCTATT
GGTTGTTTCTCTTGTTTGTTACGTGCTGACATTTGGCTTCTCGGGACTTC
TTTTCCCTTTGGTTCACCCCATCAGGGCAGGAATGGGGGGCCCAATACAT
TCCTTCCTGTTATGAAACCTGAATCCTTGCTATTAACCTCCCCCGTATCT
GCCCAACCCCCCGCCTGGGGGGGGGCAACCGTTTTTGCCTGGCGTCATAA
TAACCCCTTACCTGGCGGTACCTCCCGTTACGCGGACCTTACACTGCAAC
CAAAAAACTATGAATGGTATGGCCTCCTCCAACGGATTCCATACCTTCGT
CTAACGTGGAAGCCACCCGTTGGACACAAATTCCCACTGATCTCATATAA
AAACATACCTTCGCCGACTCTGCTCCGACTACC
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