DY260042

Overview
NameDY260042
Unique NameDY260042
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length972
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260042 vs. ExPASy Swiss-Prot
Match: BURP3_ORYSJ (BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.839e-29
Identity = 77/203 (37.93%), Postives = 109/203 (53.69%), Query Frame = 1
Query:  226 HMDPSTMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMPDFVHGTFRLETKFQVLSTKFLAQSPTIFQNYTILQVPKPMVA---PQMVACPIMPYPYAILHCPSPMTENKLFRVSLGGDNGKRMETVALCPLETSHWSPKSAPF 825
            H DP+  +FF  KDL  G+TM ++F     +A  + LPR EAD++PFS +++P +L  FS    S  A  M  TL  CE PP +GE K CATSLESM DF   T  L T     ++  + +  +  Q YT+  V +        Q+VAC   PY YA+  C       + + VS+ G +G  +E VA+C  +T+ W+PK   F
Sbjct:  205 HDDPNVALFFLEKDLHPGKTMAVHFTAT--TAGEKFLPRSEADAMPFSSEKVPEILSRFSVKPGSVEAAEMAQTLRDCEAPPAQGERKACATSLESMVDF--ATSSLGTSHVRAASTVVGKEGSPEQEYTVTAVKRAAAGGDQDQLVACHAEPYAYAVFACHLTRA-TRAYAVSMAGRDGTGVEAVAVCHADTAGWNPKHVAF 402          
BLAST of DY260042 vs. ExPASy Swiss-Prot
Match: BURPH_ORYSJ (BURP domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=BURP17 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.290e-27
Identity = 74/203 (36.45%), Postives = 111/203 (54.68%), Query Frame = 1
Query:  232 DPSTMVFFTLKDLKIGETM--PIYFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMPDFVHGTFRLETKFQVLSTKFLA---QSPTIFQNYTILQVPKPMVAPQMVACPIMPYPYAILHCPSPMTENKLFRVSLGGDNGKRMETVALCPLETSHWSPKSAPF 825
            DP   +FF  K+L+ G+ +   ++F     +   + LPR +ADS+PFS K+LP +L  F     S  A  M  TL  CE+P  +GE K CATSLES+ DFV  +F   +     ST  L+   +S ++ Q+YT+  V +     Q++AC    YPYA+  C       + ++ SL G +G  +E VA+C  +TS W+P+ A F
Sbjct:  357 DPDMALFFLEKNLQQGKKINNALHFANLLATTNSKFLPRGKADSIPFSSKELPEILDRFGVRPGSDDAAEMSATLQDCELPANKGEKKACATSLESIVDFVTSSFG-ASDVDAASTVVLSKAVESSSLAQDYTVSGVRRMAGTGQLIACHPESYPYAVFMCHLTEATTRAYKASLVGKDGTAVEAVAVCHTDTSDWNPEHAAF 558          
BLAST of DY260042 vs. ExPASy Swiss-Prot
Match: BURP5_ORYSJ (BURP domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=BURP5 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.883e-24
Identity = 73/201 (36.32%), Postives = 109/201 (54.23%), Query Frame = 1
Query:  232 DPSTMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMPDFVHGTFRLETKFQVLSTKFLA--QSPTIFQNYTILQVPKPMVAPQMVACPIMPYPYAILHCPSPMTE-NKLFRVSLGGDNGKRMETVALCPLETSHWSPKSAPF 825
            DP+  +FF   +L+  +++ ++F      A  + LPR EAD++PFS K L  +L  F     S  A  ++ TL  CE+P  +GE K CATSLESM DFV  +  L T+    ++ FL      T  Q YT+    +     Q++AC    YPYA+  C   +TE  + ++ SL G +G  +E VA+C  +T+ W+PK A F
Sbjct:  103 DPTMGLFFLETNLQSSKSIKLHFANM--MAGTKFLPRGEADAVPFSSKDLQEILARFGVRPGSVDASVVKNTLLECELPANKGEKKACATSLESMVDFVASS--LGTRDIKAASTFLVGKDGDTPAQEYTVTGARRMAETGQLIACHPESYPYAVFMC--HLTEATRAYKASLVGKDGAAVEAVAVCHTDTAEWNPKHAAF 297          
BLAST of DY260042 vs. ExPASy Swiss-Prot
Match: RAF1B_WHEAT (Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.130e-23
Identity = 69/197 (35.03%), Postives = 101/197 (51.27%), Query Frame = 1
Query:  238 STMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMPDFVHGTFRLETKFQVLSTKFLAQSPTIFQNYTILQVPKPMVAPQMVACPIMPYPYAILHCPSPMTENKLFRVSLGGDNGKRMETV-ALCPLETSHWSPKSAPF 825
            +T VFF  + +++G  +P +F    P+A    LPR+ ADS+PF+   LP +L  F  + DS    +ME TL  CE P I GE+K CATSLE++ +   G         V ST   A +P   Q YT++ V      P  VAC    YPY +  C +    ++ + V + G  G    T+ A+C  +TS W+P+   F
Sbjct:  138 TTTVFFHEEAVRVGRRLPFHFPPATPAALG-FLPRQVADSVPFTTAALPGILATFGIASDSTTVPSMEATLRACESPTIAGESKFCATSLEALVERAMGVLGTRDIRPVTSTLPRAGAP--LQTYTVVAVQPVEGGPVFVACHDEAYPYTVYRCHT-TGPSRAYTVDMEGARGADAVTIAAVCHTDTSLWNPEHVSF 330          
BLAST of DY260042 vs. ExPASy Swiss-Prot
Match: RD22_ARATH (Dehydration-responsive protein RD22 OS=Arabidopsis thaliana GN=RD22 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.200e-22
Identity = 70/202 (34.65%), Postives = 101/202 (50.00%), Query Frame = 1
Query:  226 HMDPSTMVFFTLKDLKIGETMPIYFRKRDPSAYPQA-LPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMPDFVHGTFRLETKFQVLSTKFLAQSPTIFQNYTILQV-PKPMVAPQMVACPIMPYPYAILHCPSPMTENKLFRVSLGGDNGKRMETVALCPLETSHWSPKSAPF 825
            H DP+  +FF  KDL  G+ M + F   D      A LPR EA+++PF  ++    L+ FS    S  A+ M+ T+  CE   + GE K CATSLESM DF       +   + +ST+ +A+     Q Y I     K +   + V C    YP+A+ +C   M    ++ V L G+NG R + VA+C   TS W+P    F
Sbjct:  168 HDDPNAALFFLEKDLVRGKEMNVRFNAEDGYGGKTAFLPRGEAETVPFGSEKFSETLKRFSVEAGSEEAEMMKKTIEECEARKVSGEEKYCATSLESMVDFSVSKLG-KYHVRAVSTE-VAKKNAPMQKYKIAAAGVKKLSDDKSVVCHKQKYPFAVFYCHKAMM-TTVYAVPLEGENGMRAKAVAVCHKNTSAWNPNHLAF 366          
BLAST of DY260042 vs. ExPASy Swiss-Prot
Match: BURP6_ORYSJ (BURP domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=BURP6 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.097e-22
Identity = 71/185 (38.38%), Postives = 92/185 (49.73%), Query Frame = 1
Query:  232 DPSTMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMPDFVHGTFRLETKFQVLSTKFLAQSPTIFQNYTILQV-PKPMVAPQMVACPIMPYPYAILHCPSPMTENKLFRVSLGGDNGKRMETVALC 783
            D    VFF  KDL  G  M ++F +    A    LPR  ADS+PF+ ++LP +L   S    SP A AM  TL  CE  P  GE K CATSLESM +F   +         +ST+     PT  Q Y +  V P P+    MVAC  M Y YA+  C +  T    + V+L G +G + E +A C
Sbjct:   22 DTVNNVFFLEKDLFPGSKMTLHFTRATAGA--ALLPRGRADSVPFASEKLPEILSQLSVPAGSPAADAMRSTLAECEAAPQAGEAKRCATSLESMVEFAASSLGTR-DVHAVSTEVDRAGPTPRQAYRVEAVRPVPVSGGDMVACHGMAYAYAVFGCHT--TTAAAYTVTLAGADGTKAEALAAC 201          
BLAST of DY260042 vs. ExPASy Swiss-Prot
Match: RAF1A_WHEAT (Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.058e-21
Identity = 68/197 (34.52%), Postives = 99/197 (50.25%), Query Frame = 1
Query:  238 STMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMPDFVHGTFRLETKFQVLSTKFLAQSPTIFQNYTILQVPKPMVAPQMVACPIMPYPYAILHCPSPMTENKLFRVSLGGDNGKRMETVA-LCPLETSHWSPKSAPF 825
            +T VFF  + +++G+ +P  F    P+A    LPR+ ADS+PF+   LP +L  F  + DS    +ME TL  CE P I GE+K CATSLE++ +             V ST   A +P   Q YT+  V      P  VAC    YPY +  C +    ++ + V + G  G    T+A +C  +TS W+P+   F
Sbjct:  165 TTTVFFHEEAVRVGKRLPFRFPPATPAALG-FLPRQVADSVPFTTAALPGVLATFGVASDSATVASMEATLRACESPTIAGESKFCATSLEALVERAMEVLGTRDIRPVTSTLPRAGAP--LQTYTVRSVRPVEGGPVFVACHDEAYPYTVYRCHT-TGPSRAYMVDMEGARGGDAVTIATVCHTDTSLWNPEHVSF 357          
BLAST of DY260042 vs. ExPASy Swiss-Prot
Match: BURPD_ORYSJ (BURP domain-containing protein 13 OS=Oryza sativa subsp. japonica GN=BURP13 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.605e-20
Identity = 67/201 (33.33%), Postives = 96/201 (47.76%), Query Frame = 1
Query:  238 STMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGETKICATSLESMPDFVHGTF-RLETKFQVLSTKFLAQSPTIFQNYTILQVPKPMVAPQMVACPIMPYPYAILHCPSPMTENKLFRVSL----GGDNGKRMETVALCPLETSHWSPKSAPF 825
            +T VFF  + +++GE +P YF     SA    LPR  ADS+PF+   LP +L  F  + D+  A  M  TL  CE P + GE+K CATSLE++   V G    L T+        L +     Q Y +  V  P+     VAC    YPY +  C +     + + V +    GGD G+ +    +C   TS W+P+   F
Sbjct:  186 TTTVFFHEEAVRVGERLPFYFPAATTSALG-FLPRRVADSIPFTAAALPAVLALFGVAPDTAEAAGMRETLRTCEWPTLAGESKFCATSLEAL---VEGAMAALGTRDIAALASTLPRGGAPLQAYAVRAV-LPVEGAGFVACHDQAYPYTVYRCHT-TGPARAYMVEMEGDGGGDGGEAVTVATVCHTNTSRWNPEHVSF 380          
BLAST of DY260042 vs. ExPASy Swiss-Prot
Match: BURP2_ORYSJ (BURP domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=BURP2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.431e-18
Identity = 68/185 (36.76%), Postives = 86/185 (46.49%), Query Frame = 1
Query:  247 VFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGET-----KICATSLESMPDFVHGTFRLETKFQVLSTKFLAQSPTIFQNYTILQV-PKPMVAPQMVACPIMPYPYAILHCPSPMTENKLFRVSLGGDNGKRMETVALC 783
            VFF  KDL  G  M ++F +    A    LPR  ADS+PF+ ++LP +L   S    SP A AM  TL  CE   I  ET       CATSLESM + V  +        V +       PT  Q Y +  V P P+    MVAC  MPY YA+        +   + V+L G +G   E VA C
Sbjct:   66 VFFLEKDLFPGSKMTLHFTRATAGA--ALLPRGRADSVPFASEKLPEILSQLSIPAGSPTADAMRSTLAVCEAARIASETAPKHKHYCATSLESMVELVASSLGTRDVHAVSTEVVNRAGPTPRQAYRVEAVRPVPVPGGDMVACHRMPYAYAVFGVHG--IKGAAYTVTLAGADGTMAEAVAAC 246          
BLAST of DY260042 vs. ExPASy Swiss-Prot
Match: BURP1_ORYSJ (BURP domain-containing protein 1 OS=Oryza sativa subsp. japonica GN=BURP1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.639e-16
Identity = 59/154 (38.31%), Postives = 78/154 (50.65%), Query Frame = 1
Query:  247 VFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSLPFSLKQLPYLLQFFSFSDDSPLAKAMEGTLNHCEVPPIEGET----KICATSLESMPDFVHGTFRLETKFQVLSTKFLAQSPTIFQNYTILQVPKPMVAP--QMVACPIMPYPYAI 690
            VFF  KDL  G  M ++F +    A    LPR  A+S+PF+ ++LP +L   S    SP A AM  TL  CE   + GET      CATSLESM +FV  +        V +      +PT  Q Y + +  +P+  P   MVAC  MPY YA+
Sbjct:   64 VFFLEKDLFPGSKMTLHFTRATAGA--ALLPRGRAESVPFASERLPEILSQLSIPAVSPTADAMWSTLAECEAARLAGETTKHKHYCATSLESMVEFVASSLGTRDVHAVSTEVISTLTPTPRQAYRV-EAVRPVAVPGGDMVACHGMPYAYAV 214          
The following BLAST results are available for this feature:
BLAST of DY260042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
BURP3_ORYSJ6.839e-2937.93BURP domain-containing protein 3 OS=Oryza sativa s... [more]
BURPH_ORYSJ1.290e-2736.45BURP domain-containing protein 17 OS=Oryza sativa ... [more]
BURP5_ORYSJ3.883e-2436.32BURP domain-containing protein 5 OS=Oryza sativa s... [more]
RAF1B_WHEAT1.130e-2335.03Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B... [more]
RD22_ARATH6.200e-2234.65Dehydration-responsive protein RD22 OS=Arabidopsis... [more]
BURP6_ORYSJ8.097e-2238.38BURP domain-containing protein 6 OS=Oryza sativa s... [more]
RAF1A_WHEAT1.058e-2134.52Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A... [more]
BURPD_ORYSJ2.605e-2033.33BURP domain-containing protein 13 OS=Oryza sativa ... [more]
BURP2_ORYSJ5.431e-1836.76BURP domain-containing protein 2 OS=Oryza sativa s... [more]
BURP1_ORYSJ6.639e-1638.31BURP domain-containing protein 1 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YB02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260042 ID=DY260042; Name=DY260042; organism=Citrus clementina; type=EST; length=972bp
CATATACAGTCCCCTAATCCCCTCCCCTTCTGCTTCACTTGTTATCTGTG
TTTCCTCCCCCTGAAAAAAAAAAGATTACTAAAATACCTAACAAACTTCC
ATAATAGAAAAGAGATGGGGTTACGATTTTCAGCTTGGAACCCCCTTCTT
TCCCTACTCCTTCTGTGTGCTCCGGTGCTTTCGGAGAATCTTCATGATTC
TCATTCCATACCATCCCACATGAATCACATGGACCCTTCAACGATGGTGT
TCTTCACCTTGAAGGATCTAAAGATTGGCGAAACGATGCCGATTTATTTT
CGCAAGAGAGATCCTTCAGCTTATCCTCAGGCTTTGCCTAGAGAAGAAGC
AGATTCCCTTCCATTTTCATTGAAACAACTGCCTTACCTTCTTCAATTCT
TCTCGTTCTCAGATGACTCACCCCTAGCCAAAGCCATGGAAGGGACCCTG
AATCATTGCGAAGTTCCCCCCATCGAAGGAGAAACCAAAATTTGTGCTAC
CTCTTTGGAATCCATGCCTGATTTTGTACACGGAACTTTCCGATTGGAGA
CCAAATTCCAAGTTCTAAGCACAAAATTTCTCGCACAATCACCTACCATT
TTCCAAAATTACACTATTTTACAAGTGCCCAAACCAATGGTTGCCCCCCA
GATGGTGGCATGTCCTATCATGCCCTACCCCTATGCAATCCTCCACTGCC
CCAGCCCAATGACCGAAAACAAATTATTCCGTGTTTCATTAGGTGGTGAT
AATGGAAAAAGAATGGAAACCGTAGCCCTTTGCCCCCTGGAAACCTCCCA
TTGGAGTCCAAAATCTGCCCCCTTTTCCTGTGCCTTGGAACCCAACCAGG
GACCCCCCCCGGTCCCCCCTTTCCTTCCCGGCCGAAAAAATTTGAAACCC
TTCCCCCCCCCCCCCCCCCCTAATTAAAAAAAGTATTGGTAATGGGCCCG
TTACAACCCCAATGGTCAACCC
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