DY260045

Overview
NameDY260045
Unique NameDY260045
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig876 contig Ccv1_Contig876:115..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260045 vs. ExPASy Swiss-Prot
Match: AAP7_ARATH (Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.921e-28
Identity = 52/93 (55.91%), Postives = 70/93 (75.27%), Query Frame = 1
Query:   16 RWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYLKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAK 294
            R NP+R+C RT+YV+  T +A+ FPYFN+VLGV+G + FWPL +YFPVEM + Q  I +WTR W++LR FS+VC +V    LVGSI G++ AK
Sbjct:  373 RLNPMRMCLRTMYVLITTGVAVMFPYFNEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGSIYGLVGAK 465          
BLAST of DY260045 vs. ExPASy Swiss-Prot
Match: AAP1_ARATH (Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.035e-22
Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 1
Query:   13 FRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYLKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 291
            F  +  RL +RT YVV  T +AM FP+FN +LG+IG   FWPLT+YFPVEM++ Q  I+ ++ +W+ L+   YVC IVS     GSI G+IS+
Sbjct:  381 FNISLFRLVWRTAYVVITTVVAMIFPFFNAILGLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWIALKTMCYVCLIVSLLAAAGSIAGLISS 473          
BLAST of DY260045 vs. ExPASy Swiss-Prot
Match: AAP5_ARATH (Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.174e-21
Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = 1
Query:   13 FRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYLKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIIS 288
            F  N  RL +RT +V++ T I+M  P+FN V+G++G + FWPLT+YFPVEMY+ Q N+  W  KWV L+V S  C  VS     GS+ GI+S
Sbjct:  377 FNLNLFRLVWRTFFVMTTTLISMLMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPRWGTKWVCLQVLSVTCLFVSVAAAAGSVIGIVS 468          
BLAST of DY260045 vs. ExPASy Swiss-Prot
Match: AAP3_ARATH (Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.174e-21
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 1
Query:   16 RWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYLKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 285
            R N  RL +RTV+V+  T I+M  P+FN V+G++G + FWPLT+YFPVEMY+ Q  I  W+ +WV L+VFS  C +VS     GSI G++
Sbjct:  374 RLNVFRLIWRTVFVIITTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWVCLQVFSLGCLVVSIAAAAGSIAGVL 463          
BLAST of DY260045 vs. ExPASy Swiss-Prot
Match: AAP2_ARATH (Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.174e-21
Identity = 41/91 (45.05%), Postives = 65/91 (71.43%), Query Frame = 1
Query:   13 FRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYLKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 285
            ++ N  R+ +R+ +VV+ T I+M  P+FN V+G++G + FWPLT+YFPVEMY+KQ  +E W+ +WV L++ S  C ++S    VGSI G++
Sbjct:  390 YKVNVFRMVYRSGFVVTTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRWVCLQMLSVACLVISVVAGVGSIAGVM 480          
BLAST of DY260045 vs. ExPASy Swiss-Prot
Match: AAP6_ARATH (Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.826e-21
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 1
Query:   13 FRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYLKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 291
            F  N LRL +RT YVV    +AM FP+FN  LG+IG   FWPLT+YFP+EM++ Q  I  ++  W  L++ S+ CFIVS     GS+QG+I +
Sbjct:  379 FSINFLRLVWRTSYVVVTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPIEMHIAQKKIPKFSFTWTWLKILSWTCFIVSLVAAAGSVQGLIQS 471          
BLAST of DY260045 vs. ExPASy Swiss-Prot
Match: AAP8_ARATH (Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.298e-20
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    1 LMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYLKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 291
            L+   R N  RL +RT YVV  T +AM FP+FN +LG++G   FWPLT+YFPV M++ Q  ++ ++R+W+ L +   VC IVS    VGSI G+I++
Sbjct:  368 LLGKCRVNLFRLVWRTCYVVLTTFVAMIFPFFNAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALAAVGSIIGLINS 464          
BLAST of DY260045 vs. ExPASy Swiss-Prot
Match: AAP4_ARATH (Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.413e-20
Identity = 40/91 (43.96%), Postives = 63/91 (69.23%), Query Frame = 1
Query:   13 FRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYLKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 285
            ++ N  R  +R+ +VV  T I+M  P+FN V+G++G + FWPLT+YFPVEMY++Q  +E W+ KWV L++ S  C +++    VGSI G++
Sbjct:  363 YKVNVFRAVYRSGFVVLTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIRQRKVERWSMKWVCLQMLSCGCLMITLVAGVGSIAGVM 453          
The following BLAST results are available for this feature:
BLAST of DY260045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
AAP7_ARATH4.921e-2855.91Probable amino acid permease 7 OS=Arabidopsis thal... [more]
AAP1_ARATH4.035e-2249.46Amino acid permease 1 OS=Arabidopsis thaliana GN=A... [more]
AAP5_ARATH1.174e-2148.91Amino acid permease 5 OS=Arabidopsis thaliana GN=A... [more]
AAP3_ARATH1.174e-2150.00Amino acid permease 3 OS=Arabidopsis thaliana GN=A... [more]
AAP2_ARATH1.174e-2145.05Amino acid permease 2 OS=Arabidopsis thaliana GN=A... [more]
AAP6_ARATH5.826e-2148.39Amino acid permease 6 OS=Arabidopsis thaliana GN=A... [more]
AAP8_ARATH1.298e-2046.39Amino acid permease 8 OS=Arabidopsis thaliana GN=A... [more]
AAP4_ARATH8.413e-2043.96Amino acid permease 4 OS=Arabidopsis thaliana GN=A... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YB05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260045 ID=DY260045; Name=DY260045; organism=Citrus clementina; type=EST; length=639bp
CTGATGCCAGCTTTTAGATGGAACCCTCTGAGACTGTGTTTCCGAACTGT
TTATGTTGTGTCTGTGACGGCAATTGCAATGAGCTTCCCTTACTTCAATC
AGGTTCTAGGAGTGATAGGAGGAGTGATATTTTGGCCCTTAACGATATAC
TTCCCTGTGGAGATGTACTTGAAGCAGATGAACATTGAAGCTTGGACAAG
AAAGTGGGTAATGCTTCGAGTTTTTAGCTACGTGTGCTTCATTGTGTCAA
CTTTTGGGTTGGTCGGATCAATCCAAGGAATTATAAGTGCAAAATTAAGC
TAAGAAAAGGTACGGTTCATATAGGCTTATGTAATATAAGATGAATAATA
GCTGAAGATTTAGTGATGATGGATCAGATTTTATTGGTCATGATGCAGGC
ATCTCTAAATTTTAATGGAGAAGCCATGTAATATATCAGTGTCTTTTCAA
GTCTTAAGAGTCGGGATGTCTTTTCAGAGGTGGCGATTGTTGTATTGCAT
TGTGTCAAGTGTCGGCCAATGGCTTGTTGGTCGGCTTGTAGTCTTCCCCT
CATTCTGTTTCAAAGAGTGCTATTTGTTTATTCAAAACCAAAACTCGATC
AAAATAATGAGTTAGATCCAGTGCCCCATTTGTTGAAGT
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