DY260046

Overview
NameDY260046
Unique NameDY260046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260046_ssr1 microsatellite DY260046_ssr1:1..10. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260046 vs. ExPASy Swiss-Prot
Match: TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.571e-69
Identity = 132/156 (84.62%), Postives = 134/156 (85.90%), Query Frame = 1
Query:   73 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFLVGESMHDDGCLVFAYYKEGATDPTF 540
            MLVYQDLLTGDELLSDSFPYKEI NGILWEVEGKWVVQGAVDVDIGANPS               KVVDIVDTFRLQEQPAFDKK FVTYMKRFIKLLTPKL EE+QE FKKNIEGATKFLLSKLSDLQF VGESMHDDG LVFAYY+ GATDPTF
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIHNGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLDEEKQESFKKNIEGATKFLLSKLSDLQFFVGESMHDDGSLVFAYYRGGATDPTF 156          
BLAST of DY260046 vs. ExPASy Swiss-Prot
Match: TCTP_ELAGV (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.149e-67
Identity = 126/156 (80.77%), Postives = 135/156 (86.54%), Query Frame = 1
Query:   73 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFLVGESMHDDGCLVFAYYKEGATDPTF 540
            MLVYQDLLTGDELLSDSFPYKEI NG+LWEVEGKWV+QGAV+VDIGANPS               KVVDIVDTFRLQEQPAFDKK FVT+MKR+IK LTPKL  E+QE+FKK+IEGATKFLLSKLSDLQF VGESMHDDGCLVFAYYK+GATDPTF
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIHNGMLWEVEGKWVIQGAVNVDIGANPSAEGGEEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLDAEKQELFKKHIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKDGATDPTF 156          
BLAST of DY260046 vs. ExPASy Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.189e-64
Identity = 119/156 (76.28%), Postives = 129/156 (82.69%), Query Frame = 1
Query:   73 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFLVGESMHDDGCLVFAYYKEGATDPTF 540
            MLVYQDLLTGDELLSDSFPYKE+ENG++WEVEGKWVVQGAVDVDIGANPS               KVVDIVDTFRLQEQP  DKK F+ Y+K+FIKLLTPKL  E+QE FKKNIEGATKFLL KL D +F VGESMHDD C+VFAYY+EGATDPTF
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVKVVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLKDFRFFVGESMHDDSCIVFAYYREGATDPTF 156          
BLAST of DY260046 vs. ExPASy Swiss-Prot
Match: TCTP_ORYSJ (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica GN=TCTP PE=1 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.705e-64
Identity = 121/156 (77.56%), Postives = 130/156 (83.33%), Query Frame = 1
Query:   73 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFLVGESMHDDGCLVFAYYKEGATDPTF 540
            MLVYQDLLTGDELLSDSFPY+EIENGILWEV+GKWVVQGA+DVDIGANPS               KVVDIVDTFRLQEQP FDKK FVT+MKR+IK L+ KL  E+QE FKKNIEGATK+LL KL DLQF VGESMHDDG LVFAYYK+GATDPTF
Sbjct:    1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDIGANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFVTFMKRYIKNLSAKLDAEKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYKDGATDPTF 156          
BLAST of DY260046 vs. ExPASy Swiss-Prot
Match: TCTP_SOYBN (Translationally-controlled tumor protein homolog OS=Glycine max GN=TCTP PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.006e-63
Identity = 121/156 (77.56%), Postives = 130/156 (83.33%), Query Frame = 1
Query:   73 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFLVGESMHDDGCLVFAYYKEGATDPTF 540
            MLVYQDLLTGDELLSDSF YKEIENG+LWEVEGKWVV+GAVDVDIGANPS               KVVDIVDTFRLQEQPAFDKK FVT+MKRFIK LTPKL  E+QE+FKK+IEGATK+LLSK+ D QF VGESM DD CLVFAYYK+GA DPTF
Sbjct:    1 MLVYQDLLTGDELLSDSFRYKEIENGMLWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGVDDAAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRFIKNLTPKLDAEQQELFKKHIEGATKYLLSKIKDFQFFVGESMGDDACLVFAYYKDGAADPTF 156          
BLAST of DY260046 vs. ExPASy Swiss-Prot
Match: TCTP_SOLLC (Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.242e-63
Identity = 119/156 (76.28%), Postives = 128/156 (82.05%), Query Frame = 1
Query:   73 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFLVGESMHDDGCLVFAYYKEGATDPTF 540
            MLVYQDLLTGDELLSDSFPYKE+ENG+LWEV+GKWVVQGAVDV+IGANPS               +VVDIVDTFRLQEQPAFDKK FVT+MKR+IK LTPKL  E QE FKKNIE ATKFLL K+ DLQF VGESMHDDG LVFAYYKEG+ DP F
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEVENGVLWEVQGKWVVQGAVDVNIGANPSAEGGCEDEGVDDQAVRVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLEGETQEAFKKNIEAATKFLLQKIKDLQFFVGESMHDDGALVFAYYKEGSADPPF 156          
BLAST of DY260046 vs. ExPASy Swiss-Prot
Match: TCTP_SOLTU (Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE=2 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 1.113e-62
Identity = 119/156 (76.28%), Postives = 127/156 (81.41%), Query Frame = 1
Query:   73 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFLVGESMHDDGCLVFAYYKEGATDPTF 540
            MLVYQDLLTGDELLSDSFPYKEI+NG+LWEV+GKWVVQGAVDV+IGANPS               KVVDIVDTFRLQEQPAFDKK FVTY+KR+IK LTPKL  E QE FKKNIE ATKFLLSKL D QF VGE MHDD  LVFAYYK+G+ DPTF
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIQNGMLWEVQGKWVVQGAVDVNIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYIKRYIKNLTPKLEGEAQEAFKKNIESATKFLLSKLKDFQFFVGEGMHDDSALVFAYYKDGSADPTF 156          
BLAST of DY260046 vs. ExPASy Swiss-Prot
Match: TCTP_ARATH (Translationally-controlled tumor protein homolog OS=Arabidopsis thaliana GN=TCTP PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 5.522e-62
Identity = 117/156 (75.00%), Postives = 127/156 (81.41%), Query Frame = 1
Query:   73 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFLVGESMHDDGCLVFAYYKEGATDPTF 540
            MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWV  GAVDV+IGANPS               KVVDIVDTFRLQEQP +DKK F+ Y+K++IKLLTPKLSEE Q +FKK IEGATKFLL +LSD QF VGE MHDD  LVFAYYKEG+T+PTF
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNIGANPSAEEGGEDEGVDDSTQKVVDIVDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLSEEDQAVFKKGIEGATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYKEGSTNPTF 156          
BLAST of DY260046 vs. ExPASy Swiss-Prot
Match: TCTP_FRAAN (Translationally-controlled tumor protein homolog OS=Fragaria ananassa GN=TCTP PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 9.418e-62
Identity = 126/169 (74.56%), Postives = 135/169 (79.88%), Query Frame = 1
Query:   73 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXX--KVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFLVGESMHDDGCLVFAYYKEGATDPTFCIWLMH*GSEV 573
            MLVYQDLL+GDELLSDSFPYKEI+NG+LWEV+GKWVVQGAVDVDIGANPS                 KVVDIVDTFRLQEQP FDKK FVT++KR+IKLLTPKL  E+QE FKKNIEGATKFLLSKLSDLQF VGESM DD  LVFA YKEGATDP F I+  H   EV
Sbjct:    1 MLVYQDLLSGDELLSDSFPYKEIQNGVLWEVDGKWVVQGAVDVDIGANPSAEGADADADEGVDDQTVKVVDIVDTFRLQEQPPFDKKQFVTWVKRYIKLLTPKLEGEQQETFKKNIEGATKFLLSKLSDLQFFVGESMGDDTSLVFASYKEGATDPIF-IYFAHGLKEV 168          
BLAST of DY260046 vs. ExPASy Swiss-Prot
Match: TCTP_PEA (Translationally-controlled tumor protein homolog OS=Pisum sativum GN=TCTP PE=2 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 6.105e-61
Identity = 117/156 (75.00%), Postives = 129/156 (82.69%), Query Frame = 1
Query:   73 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFLVGESMHDDGCLVFAYYKEGATDPTF 540
            MLVYQDLLTGDELLSDS+PYKEIENG+LWEVEGKWVV+GAVDV+IGANPS               KVVDIVD FRLQEQP FDKK F+ ++K++IKLLTPKL  E+QE FKKNIEGATK+LL KL DLQF VGESMHDDG LVFAYYK+GA DPTF
Sbjct:    1 MLVYQDLLTGDELLSDSYPYKEIENGMLWEVEGKWVVKGAVDVNIGANPSAEGGEDEGVDDTAV-KVVDIVDVFRLQEQPPFDKKQFLGFVKKYIKLLTPKLEAEKQEHFKKNIEGATKYLLGKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTF 155          
The following BLAST results are available for this feature:
BLAST of DY260046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
TCTP_HEVBR3.571e-6984.62Translationally-controlled tumor protein homolog O... [more]
TCTP_ELAGV1.149e-6780.77Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCMA1.189e-6476.28Translationally-controlled tumor protein homolog O... [more]
TCTP_ORYSJ7.705e-6477.56Translationally-controlled tumor protein homolog O... [more]
TCTP_SOYBN1.006e-6377.56Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLLC2.242e-6376.28Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLTU1.113e-6276.28Translationally-controlled tumor protein homolog O... [more]
TCTP_ARATH5.522e-6275.00Translationally-controlled tumor protein homolog O... [more]
TCTP_FRAAN9.418e-6274.56Translationally-controlled tumor protein homolog O... [more]
TCTP_PEA6.105e-6175.00Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YB07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260046 ID=DY260046; Name=DY260046; organism=Citrus clementina; type=EST; length=767bp
CTCTCTCTCTCCCTCTCCAGTTTTCTCCGTTGATTGTTTTTCTTTTTTGT
GTTCCCGAGAGAGACTGCAATCATGTTGGTCTATCAAGATCTCCTCACCG
GTGATGAGCTTCTCTCCGACTCTTTTCCCTACAAGGAAATTGAGAATGGG
ATTCTGTGGGAAGTTGAGGGAAAGTGGGTTGTACAAGGAGCCGTTGATGT
TGACATTGGTGCAAATCCTTCTGCCGAAGGAGCTGATGAGGATGAGGGTG
TTGATGACCAAGCCGTGAAGGTGGTCGACATTGTCGACACATTCAGGCTA
CAGGAGCAACCCGCTTTTGACAAGAAGCCGTTTGTAACATACATGAAGAG
ATTCATCAAGTTGCTGACGCCCAAGCTGAGTGAGGAGAGGCAGGAGATAT
TTAAGAAGAATATTGAGGGAGCGACCAAGTTCTTGCTCTCCAAGCTCAGT
GACCTTCAATTCCTTGTTGGGGAGAGCATGCATGATGATGGCTGTCTTGT
CTTTGCTTACTACAAGGAGGGTGCGACCGACCCAACTTTTTGTATATGGC
TGATGCATTGAGGAAGTGAAGTGCTAAGCTGGCTTCAAGAAGAAGTGCCG
CCTGAATTCCAATTTAATTATTGGCCCCGTTATTTTAAGTATCTTTGTGG
CGGTTTACCCCGGACTTGGGCCTGCCGTTTTTATTTTTATTTTGAACAAA
CAAAAGGTTTCCGCCCCTAATTATGGGTTTTAGGTTTGAAATTAATTCCA
AAAAATTAATATTTTTT
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