DY260049

Overview
NameDY260049
Unique NameDY260049
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1402 contig Ccv1_Contig1402:1..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260049 vs. ExPASy Swiss-Prot
Match: Y205_BACP2 (UPF0176 protein BPUM_0205 OS=Bacillus pumilus (strain SAFR-032) GN=BPUM_0205 PE=3 SV=1)

HSP 1 Score: 45.4394 bits (106), Expect = 1.723e-13
Identity = 36/124 (29.03%), Postives = 56/124 (45.16%), Query Frame = 2
Query:  269 VGGKLSSLESHIDAVKSISLFEGTDFKLASSDYPLSDKVAHECGFTSLSIRIVKELVTFSSHPLLNPPDVSNAGRHLSAVEFHSILQSTGQVLDKENATDDKKLVLLDARNLYETRIGKFRTPV 640
            V G +   + +++A+K    F     K+  +D        H   F  + +R   ELV  S    +NP +++  G+HLS VEF+  +QS                V++DARN YE  +G FR  V
Sbjct:   50 VSGTIEQTDKYMEALKEDPRFASMPIKIDEAD-------GH--AFKKMHVRHRNELVNLSLEDDVNPLELT--GKHLSPVEFYEQMQS-------------PDTVVIDARNDYEFDVGHFRGAV 149          

HSP 2 Score: 42.3578 bits (98), Expect = 1.723e-13
Identity = 20/50 (40.00%), Postives = 31/50 (62.00%), Query Frame = 3
Query:   24 QEQYGVLLYYKYSTIPDLNSLFPFYESNCSSLGLLGRVRLPPHGVHVTVT 173
            ++QY VLLYY+Y  I D  +    + + C  LGLLGR+ +   G++ TV+
Sbjct:    2 EKQYRVLLYYQYVPIEDPETFTAEHLAFCKELGLLGRILISSEGINGTVS 51          

HSP 3 Score: 28.4906 bits (62), Expect = 1.723e-13
Identity = 11/26 (42.31%), Postives = 16/26 (61.54%), Query Frame = 1
Query:  655 PEIRPFSDLPHWIDKYAEPMQGKPVL 732
            P+I  F +LP WI    E ++GK +L
Sbjct:  151 PDIETFRELPEWIRDNKEILEGKKIL 176          
BLAST of DY260049 vs. ExPASy Swiss-Prot
Match: Y085_ONYPE (UPF0176 protein PAM_085 OS=Onion yellows phytoplasma GN=PAM_085 PE=3 SV=2)

HSP 1 Score: 42.3578 bits (98), Expect = 8.144e-11
Identity = 20/53 (37.74%), Postives = 32/53 (60.38%), Query Frame = 3
Query:   21 SQEQYGVLLYYKYSTIPDLNSLFPFYESNCSSLGLLGRVRLPPHGVHVTVTYP 179
            S  QY V+LYY+Y+ I D  +    +   C S+GLLGR+ +   G++ T++ P
Sbjct:    5 SNSQYLVILYYQYAPIKDPQTFRDQHFKYCESIGLLGRIIVAQEGINGTLSGP 57          

HSP 2 Score: 37.7354 bits (86), Expect = 8.144e-11
Identity = 36/124 (29.03%), Postives = 53/124 (42.74%), Query Frame = 2
Query:  269 VGGKLSSLESHIDAVKSISLFEGTDFKLASSDYPLSDKVAHECGFTSLSIRIVKELVTFSSHPLLNPPDVSNAGRHLSAVEFHSILQSTGQVLDKENATDDKKLVLLDARNLYETRIGKFRTPV 640
            + G    +  ++D +K    F  T FK+ + +       AH   F  LSI++  ELV  S     N     + G +L+  EF   LQ             +K  ++LDARN YE  +G FR  V
Sbjct:   54 LSGPEEQIHKYMDQLKQDPRFCNTVFKMETVE-------AHV--FPRLSIKVKPELVNLSLQE--NVDLTKDKGAYLAPQEFLQALQ-------------EKDTLILDARNDYEYDLGHFRNAV 153          

HSP 3 Score: 26.9498 bits (58), Expect = 8.144e-11
Identity = 9/28 (32.14%), Postives = 18/28 (64.29%), Query Frame = 1
Query:  649 LDPEIRPFSDLPHWIDKYAEPMQGKPVL 732
            ++P IR F DLP+W+ +    ++ K ++
Sbjct:  153 VNPNIRHFRDLPNWVKQNTHLLKDKKIV 180          
The following BLAST results are available for this feature:
BLAST of DY260049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y205_BACP21.723e-1329.03UPF0176 protein BPUM_0205 OS=Bacillus pumilus (str... [more]
Y085_ONYPE8.144e-1137.74UPF0176 protein PAM_085 OS=Onion yellows phytoplas... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YB10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260049 ID=DY260049; Name=DY260049; organism=Citrus clementina; type=EST; length=732bp
CAATGTCTGGTGCTTACCAGAGTCAAGAACAATACGGTGTATTACTTTAC
TACAAATACTCCACGATTCCCGATCTCAACTCACTCTTCCCCTTCTATGA
GTCCAACTGCAGCTCACTCGGTCTCCTCGGTCGAGTCCGACTCCCTCCCC
ACGGCGTCCACGTCACTGTAACATACCCTTTTCACCGTTTCAGTAATTCA
TGATAAAAATCATTGCTTTATTGTTTCTGGGCATGTGGGTTGCGTTTTGA
TTTCTGGGTTTTGACCAGGTTGGTGGAAAGTTGTCATCCTTGGAGTCCCA
CATTGATGCAGTCAAGTCCATTAGTTTGTTTGAAGGAACCGACTTTAAGC
TTGCTTCTTCTGACTATCCTTTGAGTGACAAGGTTGCTCATGAATGTGGC
TTCACTTCTCTCTCTATTCGGATTGTCAAGGAATTGGTTACTTTTAGTTC
TCATCCTTTGTTGAACCCACCTGATGTTTCAAATGCTGGGAGGCATTTAT
CTGCAGTTGAGTTCCATTCCATTCTTCAGAGTACTGGGCAAGTTCTAGAC
AAAGAAAATGCAACTGATGATAAGAAACTTGTTCTGTTGGATGCAAGGAA
CTTATACGAGACTAGAATAGGGAAGTTCCGCACCCCAGTGTGGAAACTTT
AGACCCAGAAATCAGGCCGTTTAGTGATCTGCCCCACTGGATAGATAAAT
ATGCTGAGCCAATGCAAGGAAAACCTGTTCTC
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