DY260050

Overview
NameDY260050
Unique NameDY260050
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1080
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260050_ssr739 microsatellite DY260050_ssr739:739..748. BLAST: Citrus ESTs to Prunus persica proteins V1
DY260050_ssr109 microsatellite DY260050_ssr109:109..120. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1403 contig Ccv1_Contig1403:1..1080. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: NHP2_ARATH (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana GN=At5g08180 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.638e-58
Identity = 111/154 (72.08%), Postives = 131/154 (85.06%), Query Frame = 3
Query:   69 GSDSEAH*TPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVAEDVKELASSL 530
            GSD+EA  +  K++KK  ++LAPIAKPLAGKKL KRT KL+++AA  KCLKRGVKEVVKSIRRG KGLCVIAGNISPIDVITH+PILCEE+ +PY+YV SKEDLA AGATKRPTCCVLV+ KP KG+L  EE  KLK DY  V++D+KELA+S+
Sbjct:    2 GSDTEAEKSIQKEKKKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155          
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: NHP2_YEAST (H/ACA ribonucleoprotein complex subunit 2 OS=Saccharomyces cerevisiae GN=NHP2 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 1.396e-33
Identity = 71/161 (44.10%), Postives = 112/161 (69.57%), Query Frame = 3
Query:   36 EQXTENRKKKTGSDSEAH*TPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVAEDVKEL 518
            ++  E+++ KT  + EA          ++ ++ P AKPLA KKL+K+ LK V++A++ K +KRGVKEVVK++R+G KGL VIAG+ISP DVI+H+P+LCE+  +PYI++ SK+DL  AGATKRPT  V ++    K + G+ ++++ K  +  V ++V+ L
Sbjct:    6 KEHKESKESKTVDNYEA----------RMPAVLPFAKPLASKKLNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIVPGSNKKKDGKNKEEEYKESFNEVVKEVQAL 156          
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: NHP2_SCHPO (H/ACA ribonucleoprotein complex subunit 2 OS=Schizosaccharomyces pombe GN=nhp2 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.106e-30
Identity = 63/131 (48.09%), Postives = 97/131 (74.05%), Query Frame = 3
Query:  126 SLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVAEDVKEL 518
            +L PIAKPLA KKL+K+ +K V++A++ K + RGVKEVVK++R+G KGL ++AG+ISP+DVI+H+P+LCE++++PY+Y  SKE L  A  TKRPT CV+++    K ++ + E+   K  Y  + ++V  L
Sbjct:   24 ALMPIAKPLAPKKLNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMIVPGGKKKDMSKVEE--YKESYEEIIKEVPAL 152          
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: NHP2_XENTR (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus tropicalis GN=nhp2 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 4.350e-27
Identity = 59/123 (47.97%), Postives = 81/123 (65.85%), Query Frame = 3
Query:   57 KKKTGSDSEAH*TPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 425
            K K     E   TP K   + +  L PIAKPLAG+KL+K+  K V++A + K ++RGVKEV K I +G KG+ V+AG+  PI+V  H+P++CE+  IPY YV SK DL  A  +KRPTC +L+
Sbjct:    3 KAKKEESEEVPETPSKSYDELLAYLNPIAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILI 125          
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: NHP2_XENLA (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus laevis GN=nhp2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.820e-26
Identity = 58/123 (47.15%), Postives = 81/123 (65.85%), Query Frame = 3
Query:   57 KKKTGSDSEAH*TPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 425
            K K     E   TP K   + +  L P+AKPLAG+KL+K+  K V++A + K ++RGVKEV K I +G KG+ V+AG+  PI+V  H+P++CE+  IPY YV SK DL  A  +KRPTC +L+
Sbjct:    3 KVKKEECEEVPETPSKSYDELLSYLNPVAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILI 125          
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: NHP2_DANRE (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Danio rerio GN=nhp2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.387e-25
Identity = 64/158 (40.51%), Postives = 94/158 (59.49%), Query Frame = 3
Query:   45 TENRKKKTGSDSEAH*TPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVAEDVKEL 518
            T+ +K+K G +        K  ++ I ++ PIA PLA +KLSK+  K V++AA+ K ++RGVKEV K I +G  G+ V AG+  PIDV  H+PI+CE+  +PY YV SK DL ++  +KRPTC +++  KP          D+ K  Y    E+V  L
Sbjct:    2 TKVKKEKAGEEETGG--TEKSYQELIANINPIANPLASRKLSKKLYKCVKKAAKVKQIRRGVKEVQKFINKGETGIVVFAGDTLPIDVYCHLPIMCEDRSLPYAYVPSKVDLGSSAGSKRPTCVIMI--KP---------HDEYKEAYDECVEEVTSL 146          
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: NHP2_CAEEL (Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS=Caenorhabditis elegans GN=Y48A6B.3 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.387e-25
Identity = 59/137 (43.07%), Postives = 91/137 (66.42%), Query Frame = 3
Query:   36 EQXTENRKKKTGSDSEAH*TPHKDEKKKIVSLA-PIAKPLAGKKLSKRTLKLVRRA-AEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 440
            E   E+   +   D+ A  T  KDE + +  L  PIA+PLA +KL+K+  KL+++A A  K L+ G+K+V K +RR  KG+C++AGN+SPIDV +H+P +CEE +IPY+Y+ S+E L  A   +RP+  +L+  KP+
Sbjct:    8 ETMNESTVSEANGDATAP-TTEKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKASAGDKTLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPS--ILIFVKPS 141          
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: NHP2_CAEBR (Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS=Caenorhabditis briggsae GN=CBG18231 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.118e-25
Identity = 54/118 (45.76%), Postives = 84/118 (71.19%), Query Frame = 3
Query:   93 TPHKDEKKKIVSLA-PIAKPLAGKKLSKRTLKLVRRAAE-HKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 440
            T  KDE + +  L  PIA+PLA +KL+K+  KL+++AA   K L+ G+K+V K +R+  KG+C++AGN+SPIDV +H+P +CEE +IPY+Y+ S+E L  A   +RP+  +L+  KP+
Sbjct:   26 TTEKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKAAAGEKTLREGIKDVQKELRKNEKGICILAGNVSPIDVYSHIPAICEEKEIPYVYIPSREQLGLAVGHRRPS--ILIFVKPS 141          
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: NHP2_BRABE (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 4.072e-25
Identity = 62/167 (37.13%), Postives = 104/167 (62.28%), Query Frame = 3
Query:   24 TPRXEQXTENRK-KKTGSDSEAH*TPHKDEKKKIVSLA----PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVAEDV 509
            TP+ ++  E  + +++G + E       D ++    LA    PIA PLA +KL+KR  K V++A++ K +++G+++V K I++G +G+ +IAG+ +PI+V  H+P++CE++ IPY YV +K+DL  A  +KRPTCCVL+  KP   E  Q   D+   D T +   +
Sbjct:    4 TPKKDKTEEKEEHEESGGNKE-------DRERAYEVLATRVNPIASPLAARKLTKRLYKTVKKASKEKNIRKGIRDVQKFIKKGERGIVLIAGDTTPIEVYCHLPVVCEDAKIPYCYVPAKQDLGEAAGSKRPTCCVLL--KP--NESYQSSYDECLTDVTTLPRPI 159          
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: NHP2_MOUSE (H/ACA ribonucleoprotein complex subunit 2 OS=Mus musculus GN=Nhp2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.945e-25
Identity = 55/121 (45.45%), Postives = 86/121 (71.07%), Query Frame = 3
Query:  111 KKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDK 473
            K+ +V+L PIA+PLA ++L+++  K +++A + K ++RGVKEV K + +G KG+ V+AG+  PI+V  H+P+LCE+ ++PY+Y+ SK DL  A  +KRPTC ++V  KP   E  QE  DK
Sbjct:   25 KELLVNLNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVLCEDQNLPYVYIPSKTDLGAATGSKRPTCVIMV--KP--HEEYQETYDK 141          
The following BLAST results are available for this feature:
BLAST of DY260050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
NHP2_ARATH1.638e-5872.08H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_YEAST1.396e-3344.10H/ACA ribonucleoprotein complex subunit 2 OS=Sacch... [more]
NHP2_SCHPO1.106e-3048.09H/ACA ribonucleoprotein complex subunit 2 OS=Schiz... [more]
NHP2_XENTR4.350e-2747.97H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_XENLA2.820e-2647.15H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_DANRE2.387e-2540.51H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_CAEEL2.387e-2543.07Putative H/ACA ribonucleoprotein complex subunit 2... [more]
NHP2_CAEBR3.118e-2545.76Putative H/ACA ribonucleoprotein complex subunit 2... [more]
NHP2_BRABE4.072e-2537.13H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_MOUSE6.945e-2545.45H/ACA ribonucleoprotein complex subunit 2 OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YB11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260050 ID=DY260050; Name=DY260050; organism=Citrus clementina; type=EST; length=1080bp
CATAACTGAAACCCTAAAAGCCCACCCCCCGGCNCGAGCAANNCACCGAG
AACCGAAAAAAGAAAACGGGAAGCGACAGCGAAGCACACTGAACCCCCCA
TAAAGATGAGAAGAAGAAGATTGTTAGTCTTGCTCCCATTGCTAAACCTC
TAGCTGGCAAGAAGCTCTCCAAAAGAACCCTCAAGCTTGTCCGTCGAGCT
GCTGAACACAAATGCTTGAAGAGAGGAGTGAAGGAAGTGGTCAAAAGTAT
CCGCCGTGGTCATAAAGGATTATGTGTTATAGCTGGGAACATTAGTCCAA
TTGATGTCATCACTCACGTTCCTATCTTATGTGAAGAGTCTGATATTCCC
TACATTTATGTTGCTTCAAAAGAGGATCTTGCAAATGCCGGTGCCACAAA
GAGGCCAACATGCTGTGTTTTGGTGCTAACTAAGCCAACTAAGGGAGAAC
TAGGACAAGAGGAACAAGATAAGTTGAAAGCTGATTATACCCTCGTTGCA
GAGGATGTGAAGGAACTGGCATCCTCTCTTTTCTGACGAACTACACTTAA
AGCCAACAAAGATGATTGTGCTTACAGATATGTTTGATTTCGAACCTTCC
CTTTCTAGCTGAGAAATGCACTCCTCTTTTGTCCAAGGTAACATGCACTT
TTGTCTCCGTTGGCCGAAAACGGTTGCGCTTCCTAGTCCCAAAAAACTAA
AAACACACCACAAAACACACCACCAGCAACAACCACCCCACACACACATC
ACCCTAAAACATCATCACCACCCTACCCTCCCCCCTTTCCTCCCACACGT
TCCGAGATCAAGACACCCCGCCACTCCCCCCCCCGCCCGCCCCCCGCACG
CCCCCCATCTTACAAAAAACTACTCATTTCCCCCCCCCCAAAAAAACCCC
CCAACTGCAACGAAACAACAACGCCCAACGTCGCTTCCCGCCCCATTCGC
CGCCCCCCGCCACAATTCCCCTCGTTCTTACATATCTCCCATCGAACTAC
CTTTTGCCTCCTGGTTTACCAACACCTCCCCCCCCCCCGACCTACGGCCC
ACCTGCTTTTCTCCTTCATAGCCGCGCACA
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