DY260054

Overview
NameDY260054
Unique NameDY260054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length963
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15337 contig Ccv1_Contig15337:124..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260054 vs. ExPASy Swiss-Prot
Match: CP21C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial OS=Arabidopsis thaliana GN=CYP21-3 PE=2 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 8.142e-51
Identity = 110/231 (47.62%), Postives = 142/231 (61.47%), Query Frame = 3
Query:   42 LARMKPQALLIPSKRKKGPTTISAKTXXXXXXXXXXXXXXXXXTYRHWSHSQRSNEQIGNESSTVEDDAYVVSKKFDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTRPKHEAFMIGTVKSKDSK-GFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQP*SDVGILHVTL 731
            +A++KPQALL  SK+KKGP+ IS                     YR W+H  RS     N  S +ED A+   K  DLP  A L+T KG + +ELFKD +P  VD+F+  CQ GYFKG  F  V+K++VIQAG S +  A  +W      R  + T  KHE FM+GT K+K+ + GFE +I +A I DLN+KL VFGRV KG+DVVQEIEEV+TD+ YQP S + I+ VTL
Sbjct:    1 MAKIKPQALLQQSKKKKGPSRISITNIVIYTLAVLLLVFVLFSAYRRWTH--RSEIPTHNGRSVLEDAAFPGMKNVDLPRFATLDTGKGSVTIELFKDTAPNVVDQFMKFCQDGYFKGFLFSRVVKHFVIQAGDSAEFDAVKDWALD---RKNIDTSLKHEEFMVGTPKAKNEQGGFEFFIVSAQIKDLNEKLTVFGRVSKGQDVVQEIEEVETDDQYQPKSPIEIMSVTL 226          
BLAST of DY260054 vs. ExPASy Swiss-Prot
Match: PPIL2_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Rhizopus oryzae GN=cyp14 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.550e-17
Identity = 53/178 (29.78%), Postives = 93/178 (52.25%), Query Frame = 3
Query:  204 NEQIGNESSTVEDDAYVVSKKFDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTRPKHEAFMIGTV--KSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQP*SDVGILHVTL 731
            N    +  + +++D ++  KK     +A + T+ G I VELF D  P+T   FI+L + GY+  + FH  IK ++IQ G         E   +     +++T  KH+A  + ++  + KD+ G + +IT A  P L+    VFG+VV G DV+ ++E +  DE  +P  ++ I  + +
Sbjct:  262 NAYTASTRALIDEDEFMY-KKIKKKSYARIITNYGNINVELFSDKKPKTCHNFIELAKTGYYNDVIFHRNIKKFMIQGGDPTGTGKGGESIWKRYFPDEIKTTLKHDARGVLSMANRGKDTNGSQFFITYAAAPHLDGLHTVFGKVVGGLDVLSKLESIPVDEKDRPEREIKIKQIQM 438          
BLAST of DY260054 vs. ExPASy Swiss-Prot
Match: PPWD1_BOVIN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Bos taurus GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.923e-16
Identity = 51/156 (32.69%), Postives = 85/156 (54.49%), Query Frame = 3
Query:  285 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTRPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEV----DTDEHYQP*SDVGILHVTLK 734
            A+++TS G I ++LF    P+TV+ F    + GY+ G +FH +IK ++IQ G         E    G+   +  +  +H+  + +    +  ++ G + +IT  P P L++K  VFGRV KG +VVQ I  V     TD+ Y+   DV I+++T+K
Sbjct:  492 AIIHTSMGDIHIKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYE---DVSIINITVK 644          
BLAST of DY260054 vs. ExPASy Swiss-Prot
Match: PPWD1_PONAB (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Pongo abelii GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.511e-16
Identity = 51/156 (32.69%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  285 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTRPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEV----DTDEHYQP*SDVGILHVTLK 734
            A+++TS G I  +LF    P+TV+ F    + GY+ G +FH +IK ++IQ G         E    G+   +  +  +H+  + +    +  ++ G + +IT  P P L++K  VFGRV KG +VVQ I  V     TD+ Y+   DV I+++T+K
Sbjct:  494 AIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYE---DVSIINITVK 646          
BLAST of DY260054 vs. ExPASy Swiss-Prot
Match: PPWD1_HUMAN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Homo sapiens GN=PPWD1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.511e-16
Identity = 51/156 (32.69%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  285 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTRPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEV----DTDEHYQP*SDVGILHVTLK 734
            A+++TS G I  +LF    P+TV+ F    + GY+ G +FH +IK ++IQ G         E    G+   +  +  +H+  + +    +  ++ G + +IT  P P L++K  VFGRV KG +VVQ I  V     TD+ Y+   DV I+++T+K
Sbjct:  494 AIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYE---DVSIINITVK 646          
BLAST of DY260054 vs. ExPASy Swiss-Prot
Match: PPWD1_MOUSE (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Mus musculus GN=Ppwd1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.111e-15
Identity = 51/156 (32.69%), Postives = 85/156 (54.49%), Query Frame = 3
Query:  285 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTRPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEV----DTDEHYQP*SDVGILHVTLK 734
            A+++TS G I ++LF    P+TV+ F    + GY+ G +FH +IK ++IQ G         E    G+   +  +  +H+  + +    +  ++ G + +IT  P P L++K  VFGRV KG +VVQ I  V     TD+ Y+   DV I+++T+K
Sbjct:  494 AIVHTSMGDIHIKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVSKGMEVVQRIFNVKVNPQTDKPYE---DVSIINITVK 646          
BLAST of DY260054 vs. ExPASy Swiss-Prot
Match: CYP1_BRUMA (Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia malayi GN=CYP-1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.231e-15
Identity = 51/152 (33.55%), Postives = 82/152 (53.95%), Query Frame = 3
Query:  306 GYIIVELFKDGSPETVDKFIDLC-----------QKGYFKGMSFHHVIKNYVIQAGH-SKDLAAADEWTSRGKIRSQLRTRPKHEAFMIGTV-KSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQP*SDVGILH 722
            G I++EL+ D +P T + F+ LC           +  ++KG +FH VIKN++IQ G  +K      E    G    +       E F++    K  ++ G + +ITT P P LN+  +VFG+VV G++VV +IE + T+   +P +DV IL+
Sbjct:   21 GRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILN 172          
BLAST of DY260054 vs. ExPASy Swiss-Prot
Match: CYP15_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp15 OS=Rhizopus oryzae GN=cyp15 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.512e-15
Identity = 51/185 (27.57%), Postives = 90/185 (48.65%), Query Frame = 3
Query:  192 SQRSNEQIGNESSTVEDDAYVVS--KKFDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTRPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQP*SDVGILHVTLK 734
            +Q++   I NE  + E+     +  +K  L   A++ T+ G I + LF D +P+ V+ F    + GY+  + FH VIK ++IQ G         E         +     +H+  + +    +  ++ G + +IT AP   L++K  VFGRV  G DVV  IE    D+  +P  D+ I+++ ++
Sbjct:  446 NQKAERDIFNEKPSREEQTVAATQERKQILGTSAIIRTTSGDIHMRLFPDAAPKAVENFTTHAKNGYYDNLIFHRVIKGFMIQTGCPFGDGTGGESIWGDDFEDEFSREFRHDRPYTVSMANAGPNTNGSQFFITVAPTTWLDNKHSVFGRVTAGMDVVHSIESAKVDKTNKPLDDIKIINIDIR 630          
BLAST of DY260054 vs. ExPASy Swiss-Prot
Match: PPIG_RAT (Peptidyl-prolyl cis-trans isomerase G OS=Rattus norvegicus GN=Ppig PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.095e-14
Identity = 50/158 (31.65%), Postives = 83/158 (52.53%), Query Frame = 3
Query:  285 AVLNTSKGYIIVELFKDGSPETVDKFIDLC--QKG---------YFKGMSFHHVIKNYVIQAGH-SKDLAAADEWTSRGKIRSQLRTRPKHEAFMIGTV-KSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQP*SDVGIL 719
            A+ N   G ++ ELF D  P+T + F  LC  +KG         ++K   FH V+K++++Q G  S+      E    G    +      ++ F++    + KD+ G + +ITT P P L+   +VFG+V+ G++VV+EIE   TD   +P ++V IL
Sbjct:   15 AINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRIL 172          
BLAST of DY260054 vs. ExPASy Swiss-Prot
Match: PPIG_MOUSE (Peptidyl-prolyl cis-trans isomerase G OS=Mus musculus GN=Ppig PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.095e-14
Identity = 50/158 (31.65%), Postives = 83/158 (52.53%), Query Frame = 3
Query:  285 AVLNTSKGYIIVELFKDGSPETVDKFIDLC--QKG---------YFKGMSFHHVIKNYVIQAGH-SKDLAAADEWTSRGKIRSQLRTRPKHEAFMIGTV-KSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQP*SDVGIL 719
            A+ N   G ++ ELF D  P+T + F  LC  +KG         ++K   FH V+K++++Q G  S+      E    G    +      ++ F++    + KD+ G + +ITT P P L+   +VFG+V+ G++VV+EIE   TD   +P ++V IL
Sbjct:   15 AINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRIL 172          
The following BLAST results are available for this feature:
BLAST of DY260054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CP21C_ARATH8.142e-5147.62Peptidyl-prolyl cis-trans isomerase CYP21-3, mitoc... [more]
PPIL2_RHIOR1.550e-1729.78Peptidyl-prolyl cis-trans isomerase-like 2 OS=Rhiz... [more]
PPWD1_BOVIN2.923e-1632.69Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_PONAB6.511e-1632.69Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_HUMAN6.511e-1632.69Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_MOUSE1.111e-1532.69Peptidylprolyl isomerase domain and WD repeat-cont... [more]
CYP1_BRUMA3.231e-1533.55Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia ma... [more]
CYP15_RHIOR5.512e-1527.57Peptidyl-prolyl cis-trans isomerase cyp15 OS=Rhizo... [more]
PPIG_RAT2.095e-1431.65Peptidyl-prolyl cis-trans isomerase G OS=Rattus no... [more]
PPIG_MOUSE2.095e-1431.65Peptidyl-prolyl cis-trans isomerase G OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YB16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260054 ID=DY260054; Name=DY260054; organism=Citrus clementina; type=EST; length=963bp
CTTGATCAGTTCCTGATTTTCCCAAATAAAGTTTCCGCATCCTGGCGAGG
ATGAAACCGCAGGCTTTGTTAATTCCAAGCAAAAGGAAGAAGGGGCCTAC
CACAATCAGTGCCAAGACCATCCTCATTTGCAATTTAATTGTCGTGTTGA
TAGTGTTGTGCTTAGTTGTCACATATAGACATTGGTCGCATTCCCAAAGG
TCAAATGAACAAATAGGGAATGAATCGTCAACCGTTGAGGATGATGCCTA
TGTGGTTTCAAAGAAGTTTGATCTTCCTGGCCATGCTGTTTTAAATACAT
CTAAAGGTTATATAATAGTGGAACTCTTCAAAGATGGTTCACCTGAAACC
GTGGATAAATTTATTGACTTGTGTCAAAAGGGGTACTTCAAAGGTATGTC
TTTCCATCATGTGATCAAAAACTATGTCATTCAAGCTGGGCATTCCAAGG
ATCTTGCAGCTGCTGATGAATGGACATCAAGAGGGAAGATCCGCAGTCAG
CTGAGGACCCGTCCGAAGCATGAGGCGTTTATGATTGGAACTGTAAAATC
TAAAGACAGCAAAGGATTTGAGCTATACATTACAACTGCACCCATACCAG
ATTTAAATGATAAGCTTATTGTGTTTGGACGAGTAGTGAAGGGTGAGGAT
GTGGTGCAGGAAATTGAAGAGGTGGATACCGATGAGCACTATCAGCCCTA
GTCAGATGTAGGGATCCTCCATGTGACCCTAAAGCATGCGATATGAGGAT
GTATGCCAAGCCACCCAAAAGATTTTACACCTAGCCCAAGTTTCTTGTTG
TGCCATTGATTTTCCTATTAATCTTGTATTGCTGCCGCCAAAACGCCTGG
TTTCCGGTTTCCCTTTCCTGCCCCCCCCCCGTTTAATGGACCCCCAGGAA
AAAAAGGGTTCCAAAAAAATGGTGTTGCCTTGGTCCCAAAAAAGTAAAAG
GTTTGGACCCTCT
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