DY260055

Overview
NameDY260055
Unique NameDY260055
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length959
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260055_ssr197 microsatellite DY260055_ssr197:197..208. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260055 vs. ExPASy Swiss-Prot
Match: PR1A1_ARATH (PRA1 family protein A1 OS=Arabidopsis thaliana GN=PRA1A1 PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 1.372e-78
Identity = 136/190 (71.58%), Postives = 152/190 (80.00%), Query Frame = 1
Query:  229 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSRLKCNLYYYRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRSSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVPWALAVGLLATILSASFRTPHLES 798
            MDWGNVT +DL DALREVDWSSPPRP SEFFSRFTVP+S  KW+SRLKCNLYYYRTNYFIMI VILGLG L RP+             FLNDSFAG+F+EK TRTVR+FSP LAAKMRPPLTPV RGR S+KRAI++CG+PRWVFVL  S VSF LWY+S GLL V  AL +  LATIL AS RTP+L++
Sbjct:    1 MDWGNVTVDDLFDALREVDWSSPPRPPSEFFSRFTVPKSVPKWDSRLKCNLYYYRTNYFIMIVVILGLGVLTRPLAIFAALLTALSLAFLNDSFAGSFSEKATRTVRRFSPQLAAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSFALWYISSGLLRVSVALLIAHLATILHASLRTPNLKA 190          

HSP 2 Score: 38.1206 bits (87), Expect = 1.372e-78
Identity = 17/20 (85.00%), Postives = 17/20 (85.00%), Query Frame = 2
Query:  785 PTLKARPNTFREEFPAVWRN 844
            P LKAR NTFREEF AVWRN
Sbjct:  186 PNLKARFNTFREEFRAVWRN 205          
BLAST of DY260055 vs. ExPASy Swiss-Prot
Match: PR1A2_ARATH (PRA1 family protein A2 OS=Arabidopsis thaliana GN=PRA1A2 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.777e-69
Identity = 112/190 (58.95%), Postives = 140/190 (73.68%), Query Frame = 1
Query:  229 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSRLKCNLYYYRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRSSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVPWALAVGLLATILSASFRTPHLES 798
            MDW NV AED+I+ALREV+WS+PPR   EFFSRF  PRS +KW SRLKCNLYYYRTNYFI++  +LGL  + RP+             FLNDSFA +FNEK  RT+R FSPH+AAKMRPP  PVIRGRS+A++ +Y+CG+PRWVFV+ F   S ++W+ SCGLL V +AL   L   I+ AS RTP+L++
Sbjct:    1 MDWDNVAAEDVIEALREVEWSTPPRSFGEFFSRFAFPRSFSKWKSRLKCNLYYYRTNYFILVIFVLGLALVTRPLALVGAALTALSIAFLNDSFAASFNEKFIRTIRHFSPHMAAKMRPPHMPVIRGRSTARKTVYVCGKPRWVFVITFLTASLVMWFSSCGLLWVLYALLTSLAVIIVHASIRTPNLKA 190          

HSP 2 Score: 38.5058 bits (88), Expect = 1.777e-69
Identity = 17/20 (85.00%), Postives = 17/20 (85.00%), Query Frame = 2
Query:  785 PTLKARPNTFREEFPAVWRN 844
            P LKAR NTFREEF AVWRN
Sbjct:  186 PNLKARLNTFREEFRAVWRN 205          
BLAST of DY260055 vs. ExPASy Swiss-Prot
Match: PR1A3_ARATH (PRA1 family protein A3 OS=Arabidopsis thaliana GN=PRA1A3 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.487e-68
Identity = 115/190 (60.53%), Postives = 141/190 (74.21%), Query Frame = 1
Query:  229 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSRLKCNLYYYRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRSSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVPWALAVGLLATILSASFRTPHLES 798
            MDW +V AED+I+ALREV+WS+ PR L+EFFSRF  PRS +KW SRLKCNLYYYRTNYFI+   +LGL  + RP+             FLNDSFA TFNEK+ RT+R FSPHLAAKMRPP  PVIRGRS+ ++ +YICG+PR VFVL+    SF+LW+ SCGLL V +AL   LL  +L AS RTP+L++
Sbjct:    1 MDWDSVAAEDVIEALREVEWSASPRSLAEFFSRFAFPRSFSKWMSRLKCNLYYYRTNYFILFVFVLGLALITRPLAILGAALTALSLAFLNDSFAATFNEKMIRTIRHFSPHLAAKMRPPHMPVIRGRSATRKTVYICGQPRLVFVLLGLTASFVLWFTSCGLLWVLYALTTALLMILLHASLRTPNLKA 190          

HSP 2 Score: 38.5058 bits (88), Expect = 1.487e-68
Identity = 17/20 (85.00%), Postives = 17/20 (85.00%), Query Frame = 2
Query:  785 PTLKARPNTFREEFPAVWRN 844
            P LKAR NTFREEF AVWRN
Sbjct:  186 PNLKARLNTFREEFRAVWRN 205          
The following BLAST results are available for this feature:
BLAST of DY260055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PR1A1_ARATH1.372e-7871.58PRA1 family protein A1 OS=Arabidopsis thaliana GN=... [more]
PR1A2_ARATH1.777e-6958.95PRA1 family protein A2 OS=Arabidopsis thaliana GN=... [more]
PR1A3_ARATH1.487e-6860.53PRA1 family protein A3 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YB19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260055 ID=DY260055; Name=DY260055; organism=Citrus clementina; type=EST; length=959bp
TTTCACAACTGTCCCTTGCCGTTAAGTCATTCCCTGGCTCACTGCACAAG
TCCCATTCAATTTAATTCTCTTCATCACATCGCAGGAAACCCACAGCCAC
AGCCTCCACTCTTTCTTAATCTGCCTAGGGTTTCGCGGATCATTTTATTT
TGCACAAAATAAATCGTTTTCTAGGGTTTCGGAAGAGCGGAATATTATAA
TAATAATAACAATAGTAGTAATCAAGCGATGGATTGGGGAAACGTAACAG
CAGAAGATCTTATCGACGCGCTTCGTGAAGTTGACTGGTCGTCTCCACCG
CGTCCTCTCTCCGAGTTCTTCTCCAGGTTCACCGTTCCGAGATCCTCCGC
CAAATGGAACAGCCGATTGAAATGCAATCTTTACTACTACCGAACAAACT
ACTTTATCATGATTACTGTCATTCTTGGGTTGGGTTTCCTAAGGAGACCT
GTTGCTATTATTGCTGCTCTTTTGACAGCCCTTAGTATTGCATTTCTCAA
TGACAGCTTTGCAGGTACTTTCAATGAGAAGGTGACAAGAACTGTGAGGC
AATTTTCTCCACATCTAGCTGCAAAGATGAGGCCTCCTCTTACACCTGTT
ATTCGTGGGCGCTCATCAGCGAAAAGAGCAATCTATATATGTGGTCGGCC
TCGTTGGGTGTTTGTCTTAATATTTTCTTGCGTAAGTTTCATCCTTTGGT
ATGTTTCCTGTGGTCTTTTGACTGTTCCATGGGCACTTGCTGTTGGACTT
CTTGCCACTATCCTTTCTGCAAGTTTTCGAACTCCCCACCTTGAAAGCCC
GTCCGAATACCTTCAGAGAGGAATTCCCTGCTGTTTGGCGCAATTAAAGT
GAACTGTAACCGAATACCCCCCCGTAAGAAGAACCTGCCCTTTTCCCGTT
GCCAAGGTTCATACCCCCCGTTGGTCCTGGATTTGCCCTTAATTGCCTCC
TCCCGTTTG
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