DY260056

Overview
NameDY260056
Unique NameDY260056
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length931
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1404 contig Ccv1_Contig1404:1..931. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT1_ARATH (Adenine phosphoribosyltransferase 1 OS=Arabidopsis thaliana GN=APT1 PE=2 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 1.102e-81
Identity = 153/190 (80.53%), Postives = 173/190 (91.05%), Query Frame = 3
Query:   33 SGDSTPPQQMASADVKAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 602
            S  ++   +MA+ DV  QDPRIA I+S+IRVIPDFPKPGIMFQDITTLLLDT+AF+DTI LFV+RYKDK ISVVAG+EARGFIFGPPIALAIGAKFVPMRKPKKLPG+VISEEYSLEYG D +EMHVGAV+ GERA+I+DDL+ATGGTL+AAIRLLERVGV +VECACVIELPELKG+E+LGE  LFVLV
Sbjct:   52 SAAASRDSEMATEDV--QDPRIAKIASSIRVIPDFPKPGIMFQDITTLLLDTEAFKDTIALFVDRYKDKGISVVAGVEARGFIFGPPIALAIGAKFVPMRKPKKLPGKVISEEYSLEYGTDTIEMHVGAVEPGERAIIIDDLIATGGTLAAAIRLLERVGVKIVECACVIELPELKGKEKLGETSLFVLV 239          
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT1_WHEAT (Adenine phosphoribosyltransferase 1 OS=Triticum aestivum GN=APT1 PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 5.855e-75
Identity = 138/174 (79.31%), Postives = 157/174 (90.23%), Query Frame = 3
Query:   81 AQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 602
            A D R+  I+S+IR IP+FPKPGI+FQDITTLLLD +AFRDT DLFVERYKDK+I+VVAG+EARGFIFGPPIALAIGAKFVP+RKPKKLPGEVISEEYSLEYG D +EMHVGAVQ  +R LIVDDL+ATGGTL AA +L+ERVG  VVECACVIELPELKGR++LG+ P+FVLV
Sbjct:    2 ASDGRVERIASSIRAIPNFPKPGILFQDITTLLLDPQAFRDTTDLFVERYKDKDITVVAGVEARGFIFGPPIALAIGAKFVPIRKPKKLPGEVISEEYSLEYGTDKIEMHVGAVQPNDRVLIVDDLIATGGTLCAAAKLIERVGAKVVECACVIELPELKGRDKLGDMPVFVLV 175          
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT2_ARATH (Adenine phosphoribosyltransferase 2 OS=Arabidopsis thaliana GN=APT2 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 2.230e-66
Identity = 126/172 (73.26%), Postives = 145/172 (84.30%), Query Frame = 3
Query:   87 DPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 602
            DPR+  IS AIRVIP FPK GIMFQDITTLLLD  AF+  +D+FV+RYK  NIS+VAG+EARGFIFGPPIALAIGAKFVP+RKP KLPG VISEEY LEYG+D +EM V AV++ ERALI+DDLVATGGTLSA+I LLER G  VVECACV+ LP+ KG+ +L  KPL+VLV
Sbjct:   11 DPRLKAISDAIRVIPHFPKTGIMFQDITTLLLDPVAFKHVVDIFVDRYKHMNISLVAGVEARGFIFGPPIALAIGAKFVPLRKPGKLPGRVISEEYELEYGRDCLEMSVEAVKSEERALIIDDLVATGGTLSASINLLERAGAEVVECACVVGLPKFKGQCKLKGKPLYVLV 182          
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_LEPBL (Adenine phosphoribosyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=apt PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.577e-48
Identity = 91/168 (54.17%), Postives = 126/168 (75.00%), Query Frame = 3
Query:  105 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEK---PLFVL 599
            + S IR IPD+PKPGI+F+DIT+LLLD +    TI  FV RY+DK I+ VAGIEARGF+ G P+A  +G  F+P+RK  KLP E +SEEY LEYGKDV+E+H  AVQ G++ L++DDL+ATGGT+ AA++LL+++G  + E   +I+LP+L G ++L EK   P+F +
Sbjct:    4 VKSKIRTIPDYPKPGILFRDITSLLLDPEGLALTIGTFVNRYQDKGITKVAGIEARGFLTGAPLAFQLGVGFIPIRKKGKLPAETVSEEYDLEYGKDVIEIHKDAVQPGDKILLMDDLIATGGTMIAAVKLLKKLGAQIYEAGVIIDLPDLGGSKKLQEKLEVPVFAI 171          
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_LEPBJ (Adenine phosphoribosyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=apt PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.577e-48
Identity = 91/168 (54.17%), Postives = 126/168 (75.00%), Query Frame = 3
Query:  105 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEK---PLFVL 599
            + S IR IPD+PKPGI+F+DIT+LLLD +    TI  FV RY+DK I+ VAGIEARGF+ G P+A  +G  F+P+RK  KLP E +SEEY LEYGKDV+E+H  AVQ G++ L++DDL+ATGGT+ AA++LL+++G  + E   +I+LP+L G ++L EK   P+F +
Sbjct:    4 VKSKIRTIPDYPKPGILFRDITSLLLDPEGLALTIGTFVNRYQDKGITKVAGIEARGFLTGAPLAFQLGVGFIPIRKKGKLPAETVSEEYDLEYGKDVIEIHKDAVQPGDKILLMDDLIATGGTMIAAVKLLKKLGAQIYEAGVIIDLPDLGGSKKLQEKLEVPVFAI 171          
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_SHELP (Adenine phosphoribosyltransferase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=apt PE=3 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 1.041e-47
Identity = 90/169 (53.25%), Postives = 124/169 (73.37%), Query Frame = 3
Query:   93 RIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVL 599
            ++A I  +I+ IPD+PKPGIMF+D+T+L+ D  A++ TI LFVERYKD  ++ V G EARGF+FG P+AL +G  FVP+RKP KLP E ISE Y LEYG D++E+H  A++ G++ L+VDDL+ATGGT+ A ++L+ ++G  V   A VI LPEL G  RL E  L ++
Sbjct:    5 KLALIKQSIKTIPDYPKPGIMFRDVTSLMEDPAAYQATIALFVERYKDLGVTKVVGTEARGFLFGAPLALELGVGFVPVRKPGKLPRETISESYELEYGHDMLEIHTDAIKPGDKVLVVDDLLATGGTIEATVKLIRQLGGEVEHAAFVISLPELGGEHRLAEMGLSLM 173          
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_LEPIN (Adenine phosphoribosyltransferase OS=Leptospira interrogans GN=apt PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.746e-47
Identity = 86/160 (53.75%), Postives = 122/160 (76.25%), Query Frame = 3
Query:  105 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEK 584
            + S IR IPD+PKPGI+F+DIT+LLLD +    TI  FV RY+ K I+ VAGIEARGF+ G P+A  +G  F+P+RK  KLP E +SEEY LEYGKDV+E+H  ++Q G++ L++DDL+ATGGT+ AA++LL+++G  + E   +I+LP+L GR++L E+
Sbjct:    4 VKSKIRTIPDYPKPGILFRDITSLLLDPEGLALTIGTFVNRYQGKGITKVAGIEARGFLTGAPLAFQLGVGFIPIRKKGKLPSETVSEEYDLEYGKDVIEVHKDSIQPGDKILLMDDLIATGGTMIAAVKLLKKLGAEIYEAGVIIDLPDLGGRKKLQEE 163          
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_LEPIC (Adenine phosphoribosyltransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=apt PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.746e-47
Identity = 86/160 (53.75%), Postives = 122/160 (76.25%), Query Frame = 3
Query:  105 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEK 584
            + S IR IPD+PKPGI+F+DIT+LLLD +    TI  FV RY+ K I+ VAGIEARGF+ G P+A  +G  F+P+RK  KLP E +SEEY LEYGKDV+E+H  ++Q G++ L++DDL+ATGGT+ AA++LL+++G  + E   +I+LP+L GR++L E+
Sbjct:    4 VKSKIRTIPDYPKPGILFRDITSLLLDPEGLALTIGTFVNRYQGKGITKVAGIEARGFLTGAPLAFQLGVGFIPIRKKGKLPSETVSEEYDLEYGKDVIEVHKDSIQPGDKILLMDDLIATGGTMIAAVKLLKKLGAEIYEAGVIIDLPDLGGRKKLQEE 163          
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_PSYIN (Adenine phosphoribosyltransferase OS=Psychromonas ingrahamii (strain 37) GN=apt PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.711e-46
Identity = 93/162 (57.41%), Postives = 118/162 (72.84%), Query Frame = 3
Query:   90 PRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 575
            P +  I + I+ IPD+P PGIMF+DIT+L+ +  AF  TI+L VERYKD+NIS V G EARGFIFG P+A AIGA FVP+RKP KLP   + E Y LEYG D + +H  A++  ER L+VDDL+ATGGT  A+I+L+ R G  V+E A VIELP LKG ++L
Sbjct:    4 PTLEEIKNCIKSIPDYPIPGIMFRDITSLIENGAAFSATINLLVERYKDQNISKVVGTEARGFIFGAPLAAAIGAGFVPVRKPGKLPRTTVHENYELEYGTDSLHIHSDAIKKNERVLLVDDLLATGGTAEASIKLIHRSGGIVIESAFVIELPALKGAQKL 165          
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_HAEIN (Adenine phosphoribosyltransferase OS=Haemophilus influenzae GN=apt PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.170e-45
Identity = 90/157 (57.32%), Postives = 118/157 (75.16%), Query Frame = 3
Query:  105 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 575
            I S+I+ IP++PK GI+F+DITTLL    AF+ TIDL VE+Y+DK I+ V G E+RGFIFG P+ALA+G  F  +RKPKKLP E IS+ Y LEYG+D +EMHV A+  G+  LI+DDL+ATGGT+ A ++L++R+G  V   A VI LPEL G +RL
Sbjct:    8 IKSSIKSIPNYPKEGIIFRDITTLLEVPAAFKATIDLIVEQYRDKGITKVLGTESRGFIFGAPVALALGLPFELVRKPKKLPRETISQSYQLEYGQDTLEMHVDAISEGDNVLIIDDLLATGGTVEATVKLVQRLGGAVKHAAFVINLPELGGEKRL 164          
The following BLAST results are available for this feature:
BLAST of DY260056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT1_ARATH1.102e-8180.53Adenine phosphoribosyltransferase 1 OS=Arabidopsis... [more]
APT1_WHEAT5.855e-7579.31Adenine phosphoribosyltransferase 1 OS=Triticum ae... [more]
APT2_ARATH2.230e-6673.26Adenine phosphoribosyltransferase 2 OS=Arabidopsis... [more]
APT_LEPBL3.577e-4854.17Adenine phosphoribosyltransferase OS=Leptospira bo... [more]
APT_LEPBJ3.577e-4854.17Adenine phosphoribosyltransferase OS=Leptospira bo... [more]
APT_SHELP1.041e-4753.25Adenine phosphoribosyltransferase OS=Shewanella lo... [more]
APT_LEPIN6.746e-4753.75Adenine phosphoribosyltransferase OS=Leptospira in... [more]
APT_LEPIC6.746e-4753.75Adenine phosphoribosyltransferase OS=Leptospira in... [more]
APT_PSYIN5.711e-4657.41Adenine phosphoribosyltransferase OS=Psychromonas ... [more]
APT_HAEIN2.170e-4557.32Adenine phosphoribosyltransferase OS=Haemophilus i... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YB20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260056 ID=DY260056; Name=DY260056; organism=Citrus clementina; type=EST; length=931bp
CTCACTGACTATTTTCGGCGTTTTGAGTAGTGAGTGGTGACTCCACCCCA
CCTCAACAAATGGCTTCAGCTGACGTAAAAGCACAAGACCCTCGAATCGC
TGGGATTTCCTCAGCAATTCGTGTCATCCCAGACTTCCCTAAACCAGGGA
TTATGTTTCAAGATATCACAACATTGCTTCTTGATACCAAGGCTTTTAGA
GATACTATTGATCTGTTCGTTGAGAGGTACAAGGACAAAAACATCTCTGT
TGTTGCAGGTATTGAAGCTAGGGGTTTTATATTTGGGCCTCCTATTGCAT
TGGCTATTGGGGCAAAGTTTGTTCCTATGAGGAAACCTAAGAAGCTTCCT
GGGGAGGTTATTTCCGAAGAGTATTCCTTGGAATATGGAAAAGATGTAAT
GGAGATGCATGTAGGTGCTGTACAAGCAGGGGAGCGTGCTTTAATAGTAG
ACGATCTAGTTGCAACTGGTGGGACCTTGTCTGCTGCAATCAGGCTACTT
GAGCGAGTTGGGGTGCATGTGGTTGAGTGTGCATGCGTGATTGAACTGCC
AGAGCTAAAGGGTCGGGAACGGCTGGGAGAGAAACCACTATTTGTTCTTG
TAAGCTAAACTTGACCTCCGGTTATGGTTTAAATGCAATGTTTGTGGACC
ATATGGGTTTCTAGTCGCTCGGGCCTCGCCCCAAGCCTTGAGAACCTTCT
AAAACCATCCGGTAATATAAAAGCAATTTCATTGGCTTTCTATTTTATTT
AACACCTTGGGGAAAGAGTGGTGGGGAAGCCGGGTTCCGTCCGCTATTGT
TGGGTTAAAAAATGAAAGGCCTATGAAAAAATTCCCTCCTCCCCTAAACC
CCCGTATTTGAAGCCTTTTCCAATTACCCGGAAATTCCAACCCAAGGGTT
TGTTGAAGGTTCCCTGGGGTGAATTTAAACC
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