DY260058

Overview
NameDY260058
Unique NameDY260058
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length967
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260058 vs. ExPASy Swiss-Prot
Match: LHY_ARATH (Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.156e-34
Identity = 94/226 (41.59%), Postives = 115/226 (50.88%), Query Frame = 1
Query:    4 QDDYRSFLHISSAFSSLIVSTLLQNPXXXXXXXXXXTFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMXXXXXXXXXXXXXXXXXHGLLPLCAPFHTPFTCPPACATAVSSMDTAQVPA-AKTDKNDNTPPNPALKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDH--EKNSEENELHDSNKTKNRKQVDRSSCGSNTPSSSEVETDAL 672
            QDDYRSFL ISS FS+LI+STLLQNP          + WPY ++  S DS T           SSPPS+                 HGLLP+CAP   P TC P    AV +      PA  + D  +NT         QP  + + ALQ QN ASKS    + DS+E+   KL  + K  D   E+      +HDSN  + +  VDRSSCGSNTPS S+ ETDAL
Sbjct:  284 QDDYRSFLQISSTFSNLIMSTLLQNPAAHAAATFAASVWPYASVGNSGDSST--------PMSSSPPSITAIAAATVAAATAWWASHGLLPVCAP--APITCVPFSTVAVPT------PAMTEMDTVENT---------QPFEKQNTALQDQNLASKSPASSSDDSDETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVDRSSCGSNTPSGSDAETDAL 484          

HSP 2 Score: 30.0314 bits (66), Expect = 1.156e-34
Identity = 19/40 (47.50%), Postives = 22/40 (55.00%), Query Frame = 3
Query:  747 RSRTSSN--ITDSWKEVSEVGAAGFSSTPPLERYCPPTFS 860
            R   S+N   TDSWKEVSE G   F +    ER  P +FS
Sbjct:  515 RDNNSNNNATTDSWKEVSEEGRIAFQALFARER-LPQSFS 553          
BLAST of DY260058 vs. ExPASy Swiss-Prot
Match: CCA1_ARATH (Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.699e-18
Identity = 69/220 (31.36%), Postives = 97/220 (44.09%), Query Frame = 1
Query:   40 AFSSLIVSTLLQNPXXXXXXXXXXTFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMXXXXXXXXXXXXXXXXXHGLLPLCAPF-------HTPFTCPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDHEKNSE--ENELHDSNKTKNRKQVDRSSCGSNTPSSS-EVETDA 669
            +F + I+STLLQ P          +FWP    ++S  SP            +SPP++                 +GLLPLCAP        H P T  P+C    +   T Q  + ++ +                 E+SEA +A++S       L S+  E+ S       K   HE+ S   E++   S+   +RKQVDRSSCGSNTPSSS +VE DA
Sbjct:  263 SFPNHIMSTLLQTPALYTAATFASSFWP---PDSSGGSPV---------PGNSPPNLAAMAAATVAAASAWWAANGLLPLCAPLSSGGFTSHPPSTFGPSCDVEYTKASTLQHGSVQSREQ----------------EHSEASKARSS-------LDSEDVENKS-------KPVCHEQPSATPESDAKGSDGAGDRKQVDRSSCGSNTPSSSDDVEADA 440          

HSP 2 Score: 36.965 bits (84), Expect = 7.699e-18
Identity = 19/37 (51.35%), Postives = 22/37 (59.46%), Query Frame = 3
Query:  714 SESPCTDPGN-RRSRTSSNITDSWKEVSEVGAAGFSS 821
            +  P T   N RRSR SSNITD WK VS+ G   F +
Sbjct:  459 TNKPQTSESNARRSRISSNITDPWKSVSDEGRIAFQA 495          
The following BLAST results are available for this feature:
BLAST of DY260058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LHY_ARATH1.156e-3441.59Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV... [more]
CCA1_ARATH7.699e-1831.36Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YC02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260058 ID=DY260058; Name=DY260058; organism=Citrus clementina; type=EST; length=967bp
GATCAAGATGACTATCGATCATTTCTACACATCTCATCCGCATTTTCAAG
TCTTATAGTGTCTACTCTGTTACAAAACCCTGCGGCCCATGCTGCAGCAA
GCTTTGCTGCTACATTTTGGCCCTATACAAATATGGAAACTTCAGCTGAT
TCTCCTACATGTCCGCAGGGTGGTTTCTTATCTAGACAAATGAGCTCCCC
GCCAAGTATGGCAGCTATTGCCGCAGCCACTGTAGCAGCTGCCACTGCAT
GGTGGGCAGCACATGGACTGCTTCCCTTGTGTGCCCCATTTCATACTCCT
TTTACCTGCCCTCCTGCTTGTGCAACTGCAGTTTCATCAATGGATACTGC
ACAAGTTCCGGCAGCCAAGACAGACAAAAATGACAATACTCCTCCAAATC
CTGCCTTAAAGGATCATCAACCAGACCTTGAATATTCTGAAGCTTTGCAA
GCTCAAAATTCAGCGTCTAAATCACTCACTGTGTTAACATCAGATTCCGA
GGAGAGTGCAAGTGCGAAGCTTAAAATGGAACTGAAAGCTACTGATCATG
AGAAGAATTCTGAAGAAAATGAGCTTCATGATTCAAACAAAACAAAAAAC
AGAAAGCAGGTAGACCGTTCATCATGCGGTTCCAATACACCTTCTAGCAG
TGAAGTTGAAACTGATGCATTAGAAAAGCAAGAGAAAGGCAAAGAGGAGT
CTAAAGAAATTGATCCGAGTCTCCCTGCACCGATCCTGGTAACCGTCGTA
GTAGAACCAGCAGTAACATTACCGATTCCTGGAAAGAAGTTTCCGAAGTG
GGGGCGGCTGGCTTTTCAAGCACTCCTCCCCTAGAGAGGTATTGCCCTCC
AACCTTTTCCCCTCCACCTGATCCTGAAGGACCAAATGCCCCAGGAACAT
GGAAAAGGAAAAGCCAAACGGCAATAAGAAAAGATGGAAAATAAATTCCT
TTTCCAACCTCAACACC
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