DY260068

Overview
NameDY260068
Unique NameDY260068
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length949
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1408 contig Ccv1_Contig1408:1..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260068 vs. ExPASy Swiss-Prot
Match: ELP3_ARATH (Elongator complex protein 3 OS=Arabidopsis thaliana GN=HAG3 PE=1 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 2.352e-103
Identity = 180/195 (92.31%), Postives = 189/195 (96.92%), Query Frame = 3
Query:    3 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYL 587
            IL+ +PPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHH+IKPE+VELVRRDY ANEGWETFLSYEDTRQDILVGLLRLRKCG+NVTCPELMGKCS+VRELHVYGTAVPVHGR+ADKLQHQGYGTLLMEEAERIA  EHRS K+ VISGVGTRHYYRKLGYELEGPYMVK+L
Sbjct:  370 ILSMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHKIKPEQVELVRRDYTANEGWETFLSYEDTRQDILVGLLRLRKCGKNVTCPELMGKCSVVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIARREHRSNKIGVISGVGTRHYYRKLGYELEGPYMVKHL 564          
BLAST of DY260068 vs. ExPASy Swiss-Prot
Match: ELP3_ORYSJ (Elongator complex protein 3 OS=Oryza sativa subsp. japonica GN=ELP3 PE=2 SV=2)

HSP 1 Score: 370.548 bits (950), Expect = 7.568e-102
Identity = 177/195 (90.77%), Postives = 190/195 (97.44%), Query Frame = 3
Query:    3 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYL 587
            IL+ +PPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARM+DLGLKCRDVRTREAGIQDIHH+I+P+EVELVRRDY ANEGWETFLSYEDT+QDIL+GLLRLRKCGRNVTCPEL+G+CSIVRELHVYGTAVPVHGR+ADKLQHQGYGTLLMEEAERIA  EHRS+K+AVISGVGTRHYYRKLGYELEGPYMVK L
Sbjct:  378 ILSMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHKIRPDEVELVRRDYAANEGWETFLSYEDTQQDILIGLLRLRKCGRNVTCPELVGRCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIARKEHRSKKIAVISGVGTRHYYRKLGYELEGPYMVKCL 572          
BLAST of DY260068 vs. ExPASy Swiss-Prot
Match: ELP3_DICDI (Probable elongator complex protein 3 OS=Dictyostelium discoideum GN=elp3 PE=3 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.753e-82
Identity = 145/195 (74.36%), Postives = 165/195 (84.62%), Query Frame = 3
Query:    3 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYL 587
            +LA +PPWTR+YR+QRDIPMPLVTSGVE GNLREL LARM D G KCRDVRTRE GIQ++HH+IKP++VEL+RRDYVAN GWETFLS+ED +QDIL+GLLRLRKC      PEL   CSIVRELHVYG+ V +H R+  K QHQGYGTLLMEEAERIA  EH S K+AVI+GVGTRHYYRKLGYEL+G Y+ KYL
Sbjct:  364 VLALVPPWTRIYRIQRDIPMPLVTSGVEYGNLRELCLARMKDFGTKCRDVRTREVGIQEVHHKIKPDQVELIRRDYVANGGWETFLSFEDPKQDILIGLLRLRKCSETSFRPELKENCSIVRELHVYGSVVGIHNRDPTKFQHQGYGTLLMEEAERIAREEHGSIKLAVIAGVGTRHYYRKLGYELDGVYVSKYL 558          
BLAST of DY260068 vs. ExPASy Swiss-Prot
Match: ELP3_XENTR (Elongator complex protein 3 OS=Xenopus tropicalis GN=elp3 PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 5.100e-82
Identity = 149/196 (76.02%), Postives = 166/196 (84.69%), Query Frame = 3
Query:    3 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 590
            ILA +PPWTRVYRVQRDIPMPLV+SGVE GNLRELALARM DLG +CRDVRTRE GIQ+IHH+++P +VEL+RRDYVAN GWETFLSYED  QDIL+GLLRLRKC      PEL G  SIVRELHVYG+ VP+  R+  K QHQG+G LLMEEAERIA  EH S K+AVISGVGTR+YYRKLGYELEGPYMVK L+
Sbjct:  354 ILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGTECRDVRTREVGIQEIHHKVRPYQVELIRRDYVANGGWETFLSYEDPEQDILIGLLRLRKCSEQSFRPELKGGVSIVRELHVYGSVVPISSRDPSKFQHQGFGMLLMEEAERIAREEHGSCKIAVISGVGTRNYYRKLGYELEGPYMVKKLD 549          
BLAST of DY260068 vs. ExPASy Swiss-Prot
Match: ELP3_DROME (Probable elongator complex protein 3 OS=Drosophila melanogaster GN=Elp3 PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 5.100e-82
Identity = 147/196 (75.00%), Postives = 168/196 (85.71%), Query Frame = 3
Query:    3 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 590
            ILA +PPWTRVYRVQRDIPMPLV+SGVE GNLRELALARM DLG  CRDVRTRE GIQ+IH++++P E+EL+RRDYVAN GWETFLSYED  QDILVGLLRLRKC  +   PEL G+CSIVRELHVYG+ VPV+ R+  K QHQG+G LLMEEAERIA  EH S K+AVISGVGTR+YYRK+GY+L+GPYM K +E
Sbjct:  354 ILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGTTCRDVRTREVGIQEIHNKVRPYEIELIRRDYVANGGWETFLSYEDPEQDILVGLLRLRKCSPDTFRPELKGECSIVRELHVYGSVVPVNARDPTKFQHQGFGMLLMEEAERIAREEHGSTKLAVISGVGTRNYYRKMGYQLDGPYMSKSIE 549          
BLAST of DY260068 vs. ExPASy Swiss-Prot
Match: ELP3_XENLA (Elongator complex protein 3 OS=Xenopus laevis GN=elp3 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 6.660e-82
Identity = 148/196 (75.51%), Postives = 166/196 (84.69%), Query Frame = 3
Query:    3 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 590
            ILA +PPWTRVYRVQRDIPMPLV+SGVE GNLRELALARM DLG +CRDVRTRE GIQ+IHH+++P +VEL+RRDYVAN GWETFLSYED  QDIL+GLLRLRKC      PEL G  SIVRELHVYG+ VP+  R+  K QHQG+G LLMEEAERIA  EH S K+AVISGVGTR+YYRK+GYELEGPYMVK L+
Sbjct:  354 ILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGTECRDVRTREVGIQEIHHKVRPYQVELIRRDYVANGGWETFLSYEDPEQDILIGLLRLRKCSEESFRPELKGGVSIVRELHVYGSVVPISSRDPSKFQHQGFGMLLMEEAERIARDEHGSWKIAVISGVGTRNYYRKIGYELEGPYMVKRLD 549          
BLAST of DY260068 vs. ExPASy Swiss-Prot
Match: ELP3_CHICK (Elongator complex protein 3 OS=Gallus gallus GN=ELP3 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 6.660e-82
Identity = 149/196 (76.02%), Postives = 166/196 (84.69%), Query Frame = 3
Query:    3 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 590
            ILA +PPWTRVYRVQRDIPMPLV+SGVE GNLRELALARM DLG +CRDVRTRE GIQ+IHH+++P ++EL+RRDYVAN GWETFLSYED  QDILVGLLRLRKC      PEL G  SIVRELHVYG+ VPV  R+  K QHQG+G LLMEEAERIA  EH S K+AVISGVGTR+YYRK+GYELEGPYMVK L+
Sbjct:  351 ILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGTQCRDVRTREVGIQEIHHKVRPYQIELIRRDYVANGGWETFLSYEDPEQDILVGLLRLRKCSEESFRPELKGGVSIVRELHVYGSVVPVSSRDPSKFQHQGFGMLLMEEAERIAKEEHGSWKIAVISGVGTRNYYRKIGYELEGPYMVKRLQ 546          
BLAST of DY260068 vs. ExPASy Swiss-Prot
Match: ELP3_DANRE (Elongator complex protein 3 OS=Danio rerio GN=elp3 PE=2 SV=3)

HSP 1 Score: 301.597 bits (771), Expect = 4.317e-81
Identity = 146/195 (74.87%), Postives = 165/195 (84.62%), Query Frame = 3
Query:    3 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYL 587
            ILA +PPWTRVYRVQRDIPMPLV+SGVE GNLRELALARM D+G +CRDVRTRE GIQ+IHH+++P +VEL+RRDYVAN GWETFLSYED  QDIL+GLLRLR+C      PEL G  SIVRELHVYG+ VPV  R+  K QHQG+G +LMEEAERIA  EH S K+AVISGVGTR+YYRK+GYELEGPYMVK L
Sbjct:  353 ILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDMGTECRDVRTREVGIQEIHHKVRPYQVELIRRDYVANGGWETFLSYEDPEQDILIGLLRLRRCSPQSFRPELKGGVSIVRELHVYGSVVPVSSRDPSKFQHQGFGMMLMEEAERIARDEHGSSKLAVISGVGTRNYYRKMGYELEGPYMVKNL 547          
BLAST of DY260068 vs. ExPASy Swiss-Prot
Match: ELP3_BOVIN (Elongator complex protein 3 OS=Bos taurus GN=ELP3 PE=2 SV=2)

HSP 1 Score: 298.901 bits (764), Expect = 2.798e-80
Identity = 147/196 (75.00%), Postives = 165/196 (84.18%), Query Frame = 3
Query:    3 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 590
            ILA +PPWTRVYRVQRDIPMPLV+SGVE GNLRELA ARM DLG++CRDVRTRE GIQ+IHH+++P +VELVRRDYVAN GWETFLSYED  QDIL+GLLRLRKC       EL+G  SIVRELHVYG+ VPV  R+  K QHQG+G LLMEEAERIA  EH S K+AVISGVGTR+YYRK+GY L+GPYMVK LE
Sbjct:  352 ILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELAFARMKDLGIQCRDVRTREVGIQEIHHKVRPYQVELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELVGGVSIVRELHVYGSVVPVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGPYMVKTLE 547          
BLAST of DY260068 vs. ExPASy Swiss-Prot
Match: ELP3_MOUSE (Elongator complex protein 3 OS=Mus musculus GN=Elp3 PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 6.234e-80
Identity = 147/196 (75.00%), Postives = 164/196 (83.67%), Query Frame = 3
Query:    3 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 590
            ILA +PPWTRVYRVQRDIPMPLV+SGVE GNLRELA ARM DLG++CRDVRTRE GIQ+IHH+++P +VELVRRDYVAN GWETFLSYED  QDIL+GLLRLRKC       EL G  SIVRELHVYG+ VPV  R+  K QHQG+G LLMEEAERIA  EH S KMAVISGVGTR+YYRK+GY L+GPYMVK L+
Sbjct:  352 ILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELAFARMKDLGIQCRDVRTREVGIQEIHHRVRPYQVELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGSVVPVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKMAVISGVGTRNYYRKIGYRLQGPYMVKMLK 547          
The following BLAST results are available for this feature:
BLAST of DY260068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ELP3_ARATH2.352e-10392.31Elongator complex protein 3 OS=Arabidopsis thalian... [more]
ELP3_ORYSJ7.568e-10290.77Elongator complex protein 3 OS=Oryza sativa subsp.... [more]
ELP3_DICDI1.753e-8274.36Probable elongator complex protein 3 OS=Dictyostel... [more]
ELP3_XENTR5.100e-8276.02Elongator complex protein 3 OS=Xenopus tropicalis ... [more]
ELP3_DROME5.100e-8275.00Probable elongator complex protein 3 OS=Drosophila... [more]
ELP3_XENLA6.660e-8275.51Elongator complex protein 3 OS=Xenopus laevis GN=e... [more]
ELP3_CHICK6.660e-8276.02Elongator complex protein 3 OS=Gallus gallus GN=EL... [more]
ELP3_DANRE4.317e-8174.87Elongator complex protein 3 OS=Danio rerio GN=elp3... [more]
ELP3_BOVIN2.798e-8075.00Elongator complex protein 3 OS=Bos taurus GN=ELP3 ... [more]
ELP3_MOUSE6.234e-8075.00Elongator complex protein 3 OS=Mus musculus GN=Elp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YC20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260068 ID=DY260068; Name=DY260068; organism=Citrus clementina; type=EST; length=949bp
GGATTCTAGCCCCTTTACCCCCTTGGACTCGTGTTTATAGAGTTCAGCGT
GATATTCCCATGCCTTTGGTTACTTCCGGGGTTGAGAAAGGGAACCTTCG
GGAGCTAGCTTTAGCTCGGATGGATGACTTGGGCTTGAAATGCCGTGATG
TTCGGACACGCGAAGCTGGAATTCAGGACATCCATCATCAAATAAAGCCA
GAAGAAGTAGAGCTTGTCCGTCGTGATTATGTGGCAAATGAAGGTTGGGA
AACATTTCTTTCGTACGAAGACACACGCCAGGATATTCTTGTTGGCTTGT
TGCGCTTGAGGAAGTGTGGGCGGAATGTTACTTGTCCAGAGCTCATGGGC
AAGTGTTCTATTGTTCGTGAACTCCATGTGTATGGAACCGCTGTTCCTGT
GCACGGTCGGGAAGCTGACAAGCTGCAACACCAGGGTTACGGTACACTCT
TAATGGAAGAGGCAGAGCGGATTGCACTTGGAGAGCACAGATCAAGAAAG
ATGGCCGTCATTTCAGGTGTAGGAACTCGACATTACTATAGAAAATTGGG
ATACGAACTTGAAGGTCCTTACATGGTGAAATATCTTGAGTGACCAGACA
ATAGAATTCAACGCCATTCTTTACCGGCACTCACACAAATTTCGTAATTC
TATCACATTGAGTTGTACAACTTGAGTGAACTTGCCCATGTACTACAAAG
GGCTTCCCTTCGCGACAACCCTCTCTTGTATGCCCCCCCACGCGCAACCC
CCGCCTGCCCCCCGATTCCCCCCAAAATCAGTGGTTTCCACTCCTCTCTA
AACTAAACACACCACCCCCCCCCCCCCCCCTCCGCTCCCCGATCTCCCTT
TCACCCCCGCCCTCTCTCCTCCCTCTCTCCTGCCTCTCCCCCCCTCCCAA
TCCCTCCCACCCCCCTCTCTCACCCTCCACTCCCGAATAATTCTTCCAC
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