DY260069

Overview
NameDY260069
Unique NameDY260069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length968
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260069_ssr889 microsatellite DY260069_ssr889:889..900. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1409 contig Ccv1_Contig1409:1..968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY260069 vs. ExPASy Swiss-Prot
Match: DRP2B_ARATH (Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2)

HSP 1 Score: 283.878 bits (725), Expect = 9.645e-76
Identity = 153/208 (73.56%), Postives = 169/208 (81.25%), Query Frame = 1 
Query:    1 VIPAMGGPVRVAESGHTMRQSLSDGSLDTMARRPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYISVSAQSTARIEELLQEDQNVKHRRDRYQKQSELLSKLTRQLSIHDNRAAAASNWSDGGGGAESSPRTS-AASGDDWRSAFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDVRSGSNSGSR 621
            VI A GG V  A    +MRQSLS+GSLD M R+P DPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEK+KEDMLNQLY S+SA    RIE L+QEDQNVK RRDRYQKQS LLSKLTRQLSIHDNRAAAAS+WSD   G ESSPRT+  +SG+DW +AF+AAA+GP SL+ Y    S GHSRRYSDPA+NG+  SGS   SR
Sbjct:  701 VIQARGGQVGSA----SMRQSLSEGSLDKMVRKPVDPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKSKEDMLNQLYSSISAIGNERIESLIQEDQNVKRRRDRYQKQSSLLSKLTRQLSIHDNRAAAASSWSD-NSGTESSPRTNGGSSGEDWMNAFNAAASGPDSLKRY---GSGGHSRRYSDPAQNGEDSSGSGGSSR 900
[Close]
BLAST of DY260069 vs. ExPASy Swiss-Prot
Match: DRP2A_ARATH (Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 4.480e-73
Identity = 152/209 (72.73%), Postives = 166/209 (79.43%), Query Frame = 1 
Query:    1 VIPAMGGPVRVAESGHTMRQSLSDGSLDTMARRPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYISVSAQSTARIEELLQEDQNVKHRRDRYQKQSELLSKLTRQLSIHDNRAAAASNWSDGGGGAESSPRTS-AASGDDWRSAFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDVRS-GSNSGSR 621
            VI A GG V       +MRQSLS+GSLD M R+P DPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLY S+SA    RIE L+QEDQNVK RR+RYQKQS LLSKLTRQLSIHDNRAAAAS++SD   G ESSPR S  +SGDDW +AF++AANGP    S S+  S GHSRRYSDPA+NGD  S GS S  R
Sbjct:  694 VIQARGGQV----GSVSMRQSLSEGSLDKMVRKPIDPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAIGNERIESLIQEDQNVKRRRERYQKQSSLLSKLTRQLSIHDNRAAAASSYSD-NSGTESSPRASGGSSGDDWMNAFNSAANGPSD--SLSKYGSGGHSRRYSDPAQNGDAASPGSGSNRR 895
The following BLAST results are available for this feature:
BLAST of DY260069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DRP2B_ARATH9.645e-7673.56Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 S... [more]
DRP2A_ARATH4.480e-7372.73Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YC24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260069 ID=DY260069; Name=DY260069; organism=Citrus clementina; type=EST; length=968bp
GTTATTCCAGCCATGGGAGGACCTGTTAGAGTTGCTGAAAGTGGTCATAC
GATGCGTCAGAGTCTTTCTGATGGTTCTCTTGATACCATGGCTCGAAGAC
CTGCTGACCCTGAGGAAGAACTTCGATGGATGTCTCAAGAAGTACGTGGT
TACGTTGAAGCAGTTTTGAATAGTTTAGCTGCTAATGTGCCCAAAGCAGT
TGTACTTTGCCAAGTCGAGAAAGCGAAGGAAGACATGTTGAATCAGTTAT
ATATCTCCGTCAGTGCACAAAGCACGGCAAGGATTGAAGAGCTGCTTCAG
GAGGACCAGAATGTGAAGCATAGGAGGGATCGCTATCAGAAACAGTCTGA
ACTCCTGTCTAAACTAACCCGCCAACTTAGCATTCATGACAACCGAGCGG
CTGCTGCCTCTAACTGGTCGGACGGTGGTGGTGGAGCAGAAAGCAGCCCT
AGAACAAGTGCCGCATCAGGTGATGACTGGAGATCCGCTTTTGATGCTGC
TGCCAATGGACCTGTAAGCCTTCGCAGCTACTCTCGGTCTGCATCCAATG
GTCACAGCCGGCGTTACAGTGATCCAGCCGAGAATGGTGATGTGAGATCT
GGTTCAAACTCGGGCAGTCGTCCTACTCCTAATCCGGTGCCGCCGCCTCC
CCCCCCCCACACAGTCAGGCTCCAAGTTACTTTTAAGTGGCTTACAAATT
TTGGTTGACAACTTCCATTTTCCTCCGCTTTTCTTTAGTGATTGAAGGCC
TGCTTAACCACTCCGGAACCCCGCCCGCTGGCCTTTCACTTCCTTTCAAT
TCCTCCAAATGAGGGTGCTCTTGGCCCATTTACCAACTCCATCTCCCCCC
AACCTGAACCCCACGGAACCCACCGCCTCCCCCTCCGGCCTCCCTCCCTC
CAACCACAAACTCCCCCCTCATTCCCGTTTTCCCTTCTCCGTGCTTTTCT
TCCCCTATAATCTCCAAC
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