DY260072

Overview
NameDY260072
Unique NameDY260072
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1056
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14628 contig Ccv1_Contig14628:2..1057. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of DY260072 vs. ExPASy Swiss-Prot
Match: YMF16_ARATH (Uncharacterized tatC-like protein ymf16 OS=Arabidopsis thaliana GN=YMF16 PE=2 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 6.637e-65
Identity = 132/206 (64.08%), Postives = 137/206 (66.50%), Query Frame = 2
Query:   14 FIFHEFYFPLETLPGEVRIRSVWILIGLGLTWFTCYWFSEEXXXXXXXXXXXXXXDSYFVCTQLTEAPPTYVATSSIACSYFVFPLISYQIWCFLIPSCYGEQRAKYNRXXXXXXXXXXXXXXXXXSRVVPNVWHFPYFVGATSTNLLMIKLQPNIYDYIMLTVRILFXXXXXXXXXXXXTCLLELRGPSVETFPTILVFRWFFRL 631
            +I +EF F LET+ GEVRIRSV ILIGLGLTWFTCYWFSEE              D YFVCTQLTEA  T+VATSSIACSYFVFPLISYQIWCFLIPSCYGEQR KYNR                 S VVPNVWHF YFVGATSTN LMIKLQP IYDYIMLTVRI F             CLLE RG S+ETF     F   F L
Sbjct:    5 YISYEFNFALETILGEVRIRSVRILIGLGLTWFTCYWFSEELIFLLALPFLTLPFDLYFVCTQLTEAFSTFVATSSIACSYFVFPLISYQIWCFLIPSCYGEQRTKYNRFFYLSGFCFFLFLFLTLSWVVPNVWHFLYFVGATSTNSLMIKLQPKIYDYIMLTVRISFISSVCSQVPVIVICLLEPRGLSLETFTNNRRFLMVFSL 210          
BLAST of DY260072 vs. ExPASy Swiss-Prot
Match: YMF16_MARPO (Uncharacterized tatC-like protein ymf16 OS=Marchantia polymorpha GN=YMF16 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 7.373e-48
Identity = 101/188 (53.72%), Postives = 115/188 (61.17%), Query Frame = 2
Query:   35 FPLETLPGEVRIRSVWILIGLGLTWFTCYWFSEEXXXXXXXXXXXXXX-DSYFVCTQLTEAPPTYVATSSIACSYFVFPLISYQIWCFLIPSCYGEQRAKYNRXXXXXXXXXXXXXXXXXSRVVPNVWHFPYFVGATSTNLLMIKLQPNIYDYIMLTVRILFXXXXXXXXXXXXTCLLELRGPSVETF 595
            F L+T+  EVRIR  WILI    TWFTCYWFSEE               DS F+CTQLTEA  TYV TS I+C YF+FP +SYQIWCFL+PSCY EQR KYN+                   +VPNVWHF Y +  TSTNLL+IKLQP I+DYIMLTVRILF             CLLE +G  V+TF
Sbjct:    3 FVLKTILEEVRIRVFWILICFSFTWFTCYWFSEEFIFLLAKPFLTLPYLDSSFICTQLTEALSTYVTTSLISCFYFLFPFLSYQIWCFLMPSCYEEQRKKYNKLFYLSGFCFFLFFFVTFVWIVPNVWHFLYKLSTTSTNLLIIKLQPKIFDYIMLTVRILFISSICSQVPVLVICLLESKG--VKTF 188          
The following BLAST results are available for this feature:
BLAST of DY260072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YMF16_ARATH6.637e-6564.08Uncharacterized tatC-like protein ymf16 OS=Arabido... [more]
YMF16_MARPO7.373e-4853.72Uncharacterized tatC-like protein ymf16 OS=Marchan... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YD04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260072 ID=DY260072; Name=DY260072; organism=Citrus clementina; type=EST; length=1056bp
TGAATTACTCCCATTTATATTCCATGAATTTTATTTCCCATTGGAAACTC
TTCCAGGAGAAGTTCGAATCCGTTCCGTTTGGATATTGATTGGTCTTGGT
TTGACATGGTTTACGTGTTACTGGTTCTCGGAAGAGTTAATATTTCTATT
AACTAAACCCTTTCCTACCCTGCCTTTGGACTCGTATTTTGTTTGTACAC
AATTAACGGAGGCCCCTCCCACATATGTTGCAACGTCCTCAATAGCATGC
TCTTACTTCGTCTTTCCTTTAATAAGTTATCAAATTTGGTGCTTTTTGAT
CCCTAGTTGCTATGGGGAACAAAGGGCGAAATACAATCGATTCTTCTATT
TAAGTGGTTTTTGCTTTTTCTTCTTCCTGTTCCTAACTTTTTCCCGGGTA
GTTCCCAATGTTTGGCACTTTCCATACTTCGTGGGTGCAACATCCACAAA
TTTGCTCATGATCAAGTTACAACCTAACATCTATGACTATATTATGTTAA
CTGTTCGTATTTTGTTCATTTCCTCCGTATGCCCTCCCGTACCTGTAATT
GTGACCTGCTTGCTAGAACTCAGGGGTCCTTCCGTGGAAACCTTCCCAAC
CATCCTCGTTTTTCGATGGTTTTTTCGCCTTTCCCAACTGCCCCTCCCCC
CCCTCCGGATATCCCGCGGCCCATCGTCCCCCGCTCTCCCACTCATTCAC
AATAACCTTTGCTCTCCTCTGTCTGCCCTACCTAAACCCCCCCCTGCTCA
CCGCCCCCCCCCTCCACACACCCCCCCCCCCCCCCCCACCACCCCCACCC
CTCCCCCCCCCCGCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCT
CCCCCTCCCCTCCCACCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCC
CCCTCCACCCCCCCCCACCCCCTCCTCTCCCTACCCACTCCCCCCCCTAG
ACTCACCAGCCCACTCCCCCACACCACCCCCTCCCCCCGCCCCCCCCCCC
CCCCCCTTCCTCTCCCCCCTCCCCATCCTTCTCCCCTCCGCCCCATACTC
CCTCCC
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