DY260075

Overview
NameDY260075
Unique NameDY260075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1059
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260075 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.581e-50
Identity = 91/168 (54.17%), Postives = 119/168 (70.83%), Query Frame = 1
Query:  292 NLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGPAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLPHMTAR 795
            +L DFGGVGDG TLNT+AFQ AV  +SK G +GG QL VP G+WLT  F+LTSH TLFL  DA +LA ++   WP++ PLPSYG GR+    R+ S I G NL DV+ITG NGTI+GQG  WW+++    L  TR  L+++M+S+DI ISN+TL +SP W +  + +R
Sbjct:   64 SLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHFTLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSR 231          

HSP 2 Score: 32.7278 bits (73), Expect = 5.581e-50
Identity = 17/46 (36.96%), Postives = 26/46 (56.52%), Query Frame = 2
Query:  830 PI*TPNPEGIDPHSCQELVN*DCSIMLGDEPLP*RVEGDPY*IS*G 967
            P+ +PN +GI+P SC      DC I+ GD+ +  +   D Y I+ G
Sbjct:  243 PVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYG 288          
The following BLAST results are available for this feature:
BLAST of DY260075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGLR_VITVI5.581e-5054.17Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YD07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260075 ID=DY260075; Name=DY260075; organism=Citrus clementina; type=EST; length=1059bp
CGTCCCCTCTCCCAAAATTGATGACTCTCAAAACTAAATCCTAAAAAAAT
AAAAAAACAAATGGTGGAGATATTATCGTTAGGGCGGTTTCACTTGCACC
AAAACCGACCGGACCTGCGCCGGTGGGTCCCAGCATTCCTCTCCTCTCAC
AAGACCCTCTTCACCGTGCTGTGGCTGGCCGCCTTCGCTTCTGTCTTCAT
CTGGCAGCGAAACGCCGTCGTTGGGGGCTTCTCGTTTCTCAGATGGGGCG
TGGCTTCGAGGCCGATCCCAAGGTTGAGACCCGTGGCGTTCAACTTGACG
GATTTCGGCGGAGTCGGCGACGGCGTTACTCTCAATACGGAGGCCTTTCA
GAGGGCGGTTTACGCGATTTCGAAGCTCGGAAAGAAAGGCGGTGGCCAGC
TTAATGTGCCGCCTGGAAGGTGGCTTACTGCTCCTTTTAATTTAACTAGT
CACATGACTCTGTTTCTTGCAGATGATGCTGAGATTCTAGCTATTGAGAA
TGAGAAGTACTGGCCACTAATGCCTCCATTGCCTTCATATGGTTATGGGA
GAGAACATCATGGCCCTCGGTTTGGGAGTTTCATCCATGGTCAAAACCTC
AAAGATGTTGTAATAACAGGGCATAATGGTACTATCAATGGACAAGGACC
AGCATGGTGGAAGAAATATCGCCAAAAGCTTCTTAATAACACTAGGGGCC
CACTTGTGCAGATAATGTGGTCTAGTGACATTCTCATCTCTAATATAACT
TTGCGTGATTCCCCATTTTGGACCCTCCCCCATATGACTGCCAGAATGTA
ACCATCCCGAATGTTACCATTTTGGCCTCCCTATTTGAACCCCCAACCCT
GAAGGAATTGATCCCCATTCCTGCCAGGAATTGGTGAATTGAGATTGTTC
CATAATGTTGGGGGATGAGCCATTGCCATAAAGAGTGGAAGGGGATCCGT
ATTGAATTTCCTAAGGGACAACCCTCCAAGGACCTTCCCCCTCCCCTACC
CTTTTTGTTCCCACCCCAGGGGCCCTGGCAGGGGTTTCCCAAAGGTAAGT
GAAAAGTTC
back to top