DY260076

Overview
NameDY260076
Unique NameDY260076
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1061
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY260076 vs. ExPASy Swiss-Prot
Match: GAT10_ARATH (GATA transcription factor 10 OS=Arabidopsis thaliana GN=GATA10 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.837e-28
Identity = 101/315 (32.06%), Postives = 149/315 (47.30%), Query Frame = 2 
Query:  125 MIGTNFMDEIDCGSFFDHIDDLLDFPNEDVEAGLPNADSNSFPSIWPTQSDSLP-GSDSVF-SNSSTDLSTQLSVPYEDIVQLEWLSNFVEDSFSGGSLTMSKQES-STITKDDSSHNQFQTXXXXXXXXXXXXXXGEKTVLGSPETTXXXXXXXXXXXXXXXXMFNPRPPVQLVSPTSSVTETQPPHPLIAPKASSDSENFAESRLVIKIPKPFTPEH----RRKKKSNCQFQSFP*DQ*RWAQPSRVEMPALAKYQNP------------PREKQGPGGQKPLA*QGGVPQKIGRPFPQKRARRQPQTLSPPL 1012
            MIGT+F +++DCG+FFD++DDL+DFP  D++ G    DS+SFP+IW T  D+ P  SD +F SN+++D S +L VP+EDIV++E   +FVE+     +L   K++S ST T   SSH+QF++                ++   S +TT                   PRPPVQ                        D+    +SRL+I+IPK F  +H     +KKK   +  S         + +   + + +  Q P            P+ + GP G K L    GV  K GR FP+ R    P T +P L
Sbjct:    1 MIGTSFPEDLDCGNFFDNMDDLMDFPGGDIDVGFGIGDSDSFPTIWTTHHDTWPAASDPLFSSNTNSDSSPELYVPFEDIVKVERPPSFVEE-----TLVEKKEDSFSTNTDSSSSHSQFRSSSPVSVL---------ESSSSSSQTTNTTSLVLPGKHGRPRTK-RPRPPVQ------------------DKDRVKDNVCGGDSRLIIRIPKQFLSDHNKMINKKKKKKAKITSSSSSSGIDLEVNGNNVDSYSSEQYPLRKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASP-TFTPAL 281
The following BLAST results are available for this feature:
BLAST of DY260076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GAT10_ARATH3.837e-2832.06GATA transcription factor 10 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YD08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260076 ID=DY260076; Name=DY260076; organism=Citrus clementina; type=EST; length=1061bp
CACATAACTCCACTTCACTCGCATTTCTTCCCTCTTTTCTCAAGGTTTTC
ACTTCAAATTCAGCTCTCGCTCTCTTTCTCTGCCGCCAACTCCACGAGGA
AAATTTTAATTATCAAACTCAAACATGATTGGAACAAACTTCATGGACGA
AATAGACTGCGGCAGCTTCTTTGATCACATAGACGATTTACTCGACTTCC
CAAATGAAGATGTCGAAGCCGGGTTACCCAACGCCGATTCTAACTCGTTC
CCCTCCATTTGGCCGACTCAGTCCGACTCCTTACCCGGGTCCGACTCAGT
TTTCTCCAACAGCTCCACTGACCTGTCCACCCAGCTCTCTGTTCCATATG
AGGACATTGTTCAGCTTGAGTGGCTTTCGAACTTTGTTGAGGATTCCTTC
TCTGGAGGAAGCCTTACTATGAGCAAACAAGAGTCATCCACGATCACTAA
GGATGATTCATCTCACAACCAGTTTCAGACCTCCAGCCCGGTCTCTGTTT
TAGAGAGCAGCAGCTCCTGCTCGGGGGAGAAAACCGTGTTGGGAAGCCCT
GAGACTACGGCCCCTGGGAGGCGCGGGCGTGCTCGTAGCAAGCGCCCTCG
CCCCGCAATGTTTAATCCCCGTCCTCCGGTTCAACTTGTGTCGCCAACTT
CCTCAGTCACTGAAACACAACCACCGCATCCCTTAATTGCCCCCAAGGCC
TCATCTGATTCCGAGAATTTTGCAGAGTCTCGCCTTGTGATTAAAATACC
AAAACCATTCACCCCGGAGCACAGAAGAAAAAAAAAATCAAATTGTCAGT
TCCAAAGTTTCCCATGAGACCAATGAAGGTGGGCCCAACCCAGCCGGGTA
GAAATGCCTGCCTTGGCAAAATACCAAAACCCCCCAAGGGAAAAGCAGGG
CCCAGGGGGCCAAAAACCCTTGGCATAGCAGGGCGGTGTTCCCCAAAAAA
TCGGGCGGCCCTTCCCCCAAAAAAGGGCCCGCCGGCAACCCCAAACTTTG
TCCCCCCCCTTGGCCCCCCCTTTCCCACAAAAAAGGGTGGTTAAAAGAAA
AAAACAAAAAC
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