DY260081

Overview
NameDY260081
Unique NameDY260081
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length942
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260081_ssr16 microsatellite DY260081_ssr16:16..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260081 vs. ExPASy Swiss-Prot
Match: PHSH_VICFA (Alpha-glucan phosphorylase, H isozyme OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.960e-82
Identity = 146/198 (73.74%), Postives = 166/198 (83.84%), Query Frame = 3
Query:  318 EPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGPEEVAEEWLEKFSPWEIVRHDVVFPVRFFGSVMVNPNETKKGVGGE 911
            +P  IASNISYH QY+PHFSP KF+ +QA++ATAESVRDRLIQQWNETY HF+KVD KQTYYLSMEFLQGR LTNAIG+L+IQ+AYADAL   G  LEEI EQEKD            SCFLDSMATLNLPAWGYGLRYRYGLFKQ ITK+G EEVAE+WLEKFSPWEIVRHDV++P+RFFG V VNP+ +++ +GGE
Sbjct:   29 KPDEIASNISYHAQYTPHFSPFKFQLQQAYYATAESVRDRLIQQWNETYLHFHKVDPKQTYYLSMEFLQGRALTNAIGNLNIQDAYADALRKFGLELEEITEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQIITKEGQEEVAEDWLEKFSPWEIVRHDVLYPIRFFGQVEVNPDGSRQWIGGE 226          
BLAST of DY260081 vs. ExPASy Swiss-Prot
Match: PHSH_ARATH (Alpha-glucan phosphorylase, H isozyme OS=Arabidopsis thaliana GN=At3g46970 PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.624e-80
Identity = 148/222 (66.67%), Postives = 166/222 (74.77%), Query Frame = 3
Query:  246 AKANGKNEXXXXXXXXXXXXXXXXEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGPEEVAEEWLEKFSPWEIVRHDVVFPVRFFGSVMVNPNETKKGVGGE 911
            A ANGK                  + + IA NI YH +YSPHFSP KF PEQA +ATAES+RDRLIQ WNETY HFNKVD KQTYYLSME+LQGR LTNAIG+L++Q  YADAL  LG+ LEEIAEQEKD            SCFLDSMATLNLPAWGYGLRYR+GLFKQ ITK+G EE+ E+WLEKFSPWEIVRHDVVFPVRFFG V VNP+ ++K V G+
Sbjct:    2 ANANGKAATSLPEKISAKANPEADDATEIAGNIVYHAKYSPHFSPLKFGPEQALYATAESLRDRLIQLWNETYVHFNKVDPKQTYYLSMEYLQGRALTNAIGNLNLQGPYADALRTLGYELEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRHGLFKQIITKKGQEEIPEDWLEKFSPWEIVRHDVVFPVRFFGKVQVNPDGSRKWVDGD 223          
BLAST of DY260081 vs. ExPASy Swiss-Prot
Match: PHSH_SOLTU (Alpha-glucan phosphorylase, H isozyme OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 3.618e-80
Identity = 144/199 (72.36%), Postives = 164/199 (82.41%), Query Frame = 3
Query:  318 EPSAIASNISYHVQYSPHFSPTKFEPEQAFFA-TAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGPEEVAEEWLEKFSPWEIVRHDVVFPVRFFGSVMVNPNETKKGVGGE 911
            +P+ IASNI YH QY+PHFSP KFEP QA++A TA+SVRDRLI+QWN+TY H++KV+ KQTYYLSME+LQGR LTNA+G+LDI NAYADALN LG  LEE+ EQEKD            SCFLDSMATLNLPAWGYGLRYRYGLFKQ ITK G EEV E+WLEKFSPWEIVRHDVVFP+RFFG V V P+ ++K VGGE
Sbjct:   22 DPTDIASNIKYHAQYTPHFSPFKFEPLQAYYAATADSVRDRLIKQWNDTYLHYDKVNPKQTYYLSMEYLQGRALTNAVGNLDIHNAYADALNKLGQQLEEVVEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQLITKAGQEEVPEDWLEKFSPWEIVRHDVVFPIRFFGHVEVLPSGSRKWVGGE 220          
BLAST of DY260081 vs. ExPASy Swiss-Prot
Match: PHSH_WHEAT (Alpha-glucan phosphorylase, H isozyme OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 3.386e-78
Identity = 136/198 (68.69%), Postives = 159/198 (80.30%), Query Frame = 3
Query:  318 EPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGPEEVAEEWLEKFSPWEIVRHDVVFPVRFFGSVMVNPNETKKGVGGE 911
            +PSAIA NISYH QYSPHFSP  F PEQAF+ATAESVRD L+Q+WN+TY HF+K D KQTYYLSME+LQGR LTNA+G+L I  AYADAL   G+ LE IA QE+D            SCFLDSMATLNLP+WGYGLRYRYGLFKQ+I K+G EE+AE+WL+KFSPWEIVRHDVV+P+RFFG V ++P+  +K  GGE
Sbjct:   17 DPSAIAGNISYHAQYSPHFSPLAFGPEQAFYATAESVRDHLLQRWNDTYLHFHKTDPKQTYYLSMEYLQGRALTNAVGNLAITGAYADALKKFGYELEAIAGQERDAALGNGGLGRLASCFLDSMATLNLPSWGYGLRYRYGLFKQRIAKEGQEEIAEDWLDKFSPWEIVRHDVVYPIRFFGHVEISPDGKRKWAGGE 214          
BLAST of DY260081 vs. ExPASy Swiss-Prot
Match: PHSL_IPOBA (Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.249e-64
Identity = 115/198 (58.08%), Postives = 147/198 (74.24%), Query Frame = 3
Query:  318 EPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGPEEVAEEWLEKFSPWEIVRHDVVFPVRFFGSVMVNPNETKKGVGGE 911
            + ++IAS+I YH ++SP FSP +FE  +A+FATA+SVRD LI  WN TY ++ K+++KQ YYLSMEFLQGR L NAIG+L++   YA+ALN LGH LE +A +E D            SCFLDS+ATLN PAWGYGLRY+YGLFKQ+ITK G EEVAE+WLE  +PWEI+R DV +PV+FFG V+   +  K  +GGE
Sbjct:   68 DAASIASSIKYHAEFSPAFSPERFELPKAYFATAQSVRDALIVNWNATYDYYEKLNMKQAYYLSMEFLQGRALLNAIGNLELTGEYAEALNKLGHNLENVASKEPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIIRMDVSYPVKFFGKVITGSDGKKHWIGGE 265          
BLAST of DY260081 vs. ExPASy Swiss-Prot
Match: PHSL_VICFA (Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic OS=Vicia faba GN=PHO1 PE=2 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 3.077e-63
Identity = 115/198 (58.08%), Postives = 146/198 (73.74%), Query Frame = 3
Query:  318 EPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGPEEVAEEWLEKFSPWEIVRHDVVFPVRFFGSVMVNPNETKKGVGGE 911
            + ++I S+I YH +++P FSP KFE  QAF ATA+SVRD LI  WN TY ++ K+++KQ YYLSMEFLQGR L NAIG+L++   YA+AL+ L + LE++A QE D            SCFLDS+ATLN PAWGYGLRY+YGLFKQ+ITK G EEVAE+WLE  +PWEIVR+DV +PVRF+G V+   +  K  VGGE
Sbjct:   93 DTTSIVSSIKYHAEFTPLFSPEKFELPQAFIATAQSVRDALIINWNATYDYYEKLNVKQAYYLSMEFLQGRALLNAIGNLELTGPYAEALSQLSYKLEDVAHQEPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLEMGNPWEIVRNDVSYPVRFYGKVVSGSDGKKHWVGGE 290          
BLAST of DY260081 vs. ExPASy Swiss-Prot
Match: PHSL1_SOLTU (Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 4.018e-63
Identity = 112/198 (56.57%), Postives = 146/198 (73.74%), Query Frame = 3
Query:  318 EPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGPEEVAEEWLEKFSPWEIVRHDVVFPVRFFGSVMVNPNETKKGVGGE 911
            + ++I S+I YH +++P FSP +FE  +AFFATA+SVRD L+  WN TY  + K+++KQ YYLSMEFLQGR L NAIG+L++  A+A+AL NLGH LE +A QE D            SCFLDS+ATLN PAWGYGLRY+YGLFKQ+ITK G EEVAE+WLE  SPWE+VR+DV +P++F+G V    +  +  +GGE
Sbjct:   75 DAASITSSIKYHAEFTPVFSPERFELPKAFFATAQSVRDSLLINWNATYDIYEKLNMKQAYYLSMEFLQGRALLNAIGNLELTGAFAEALKNLGHNLENVASQEPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLEIGSPWEVVRNDVSYPIKFYGKVSTGSDGKRYWIGGE 272          
BLAST of DY260081 vs. ExPASy Swiss-Prot
Match: PHSL2_SOLTU (Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum GN=STP-1 PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.994e-62
Identity = 113/198 (57.07%), Postives = 143/198 (72.22%), Query Frame = 3
Query:  318 EPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGPEEVAEEWLEKFSPWEIVRHDVVFPVRFFGSVMVNPNETKKGVGGE 911
            + +++ S+I YH +++P FSP KFE  +A++ATAESVRD LI  WN TY  + K+++KQ YYLSMEFLQGR L NAIG+L +   YADAL  LG+ LE++A QE D            SCFLDSMATLN PAWGYGLRY+YGLFKQ ITK G EEVAE WLE  +PWEIVR+D+ +PV+F+G V+   +  K+  GGE
Sbjct:   78 DSTSVLSSIKYHAEFTPSFSPEKFELPKAYYATAESVRDTLIINWNATYEFYEKMNVKQAYYLSMEFLQGRALLNAIGNLGLTGPYADALTKLGYSLEDVARQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYQYGLFKQLITKDGQEEVAENWLEMGNPWEIVRNDISYPVKFYGKVIEGADGRKEWAGGE 275          
BLAST of DY260081 vs. ExPASy Swiss-Prot
Match: PHS1_DICDI (Glycogen phosphorylase 1 OS=Dictyostelium discoideum GN=glpV PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 8.154e-40
Identity = 82/184 (44.57%), Postives = 118/184 (64.13%), Query Frame = 3
Query:  318 EPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGPEEVAEEWLEKFSPWEIVRHDVVFPVRFFGSV 869
            +  +I  +I  HV+Y+   +   F+   A+  +A SVRDRLI++WNET  ++ + D K+ YYLSMEFL GR+L NAI ++++++ Y +AL  LG  +E++ E+EKD            +CF+DS+ATL  PAWGYGLRY YG+F+Q I      EV + WL   +PWEI R DV + VRF+G V
Sbjct:   40 DEDSIQKDILDHVEYTLARTKYNFDSFSAYQGSAYSVRDRLIERWNETQQYYTERDPKRVYYLSMEFLMGRSLQNAIYNMNLKDEYHNALLELGFEMEDLYEEEKDAALGNGGLGRLAACFMDSLATLKYPAWGYGLRYNYGMFEQGIYDGYQTEVPDYWLVAGNPWEIERLDVQYTVRFYGQV 223          
BLAST of DY260081 vs. ExPASy Swiss-Prot
Match: PYGB_HUMAN (Glycogen phosphorylase, brain form OS=Homo sapiens GN=PYGB PE=1 SV=5)

HSP 1 Score: 147.132 bits (370), Expect = 1.347e-34
Identity = 74/167 (44.31%), Postives = 100/167 (59.88%), Query Frame = 3
Query:  393 PEQAFFATAESVRDRLIQQWNETYHHFNKVDLKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGPEEVAEEWLEKFSPWEIVRHDVVFPVRFFGSVMVNPNETK 893
            P   FFA A +VRD L+ +W  T  H+ + D K+ YYLS+EF  GRTL N + +L +QNA  +A+  LG  LEE+ E E+D            +CFLDSMATL L A+GYG+RY +G+F QKI      E A++WL   +PWE  R + + PV F+G V   P+  K
Sbjct:   49 PRDYFFALAHTVRDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQLGLDLEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEADDWLRYGNPWEKARPEYMLPVHFYGRVEHTPDGVK 215          
The following BLAST results are available for this feature:
BLAST of DY260081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PHSH_VICFA2.960e-8273.74Alpha-glucan phosphorylase, H isozyme OS=Vicia fab... [more]
PHSH_ARATH1.624e-8066.67Alpha-glucan phosphorylase, H isozyme OS=Arabidops... [more]
PHSH_SOLTU3.618e-8072.36Alpha-glucan phosphorylase, H isozyme OS=Solanum t... [more]
PHSH_WHEAT3.386e-7868.69Alpha-glucan phosphorylase, H isozyme OS=Triticum ... [more]
PHSL_IPOBA1.249e-6458.08Alpha-1,4 glucan phosphorylase L isozyme, chloropl... [more]
PHSL_VICFA3.077e-6358.08Alpha-1,4 glucan phosphorylase L isozyme, chloropl... [more]
PHSL1_SOLTU4.018e-6356.57Alpha-1,4 glucan phosphorylase L-1 isozyme, chloro... [more]
PHSL2_SOLTU1.994e-6257.07Alpha-1,4 glucan phosphorylase L-2 isozyme, chloro... [more]
PHS1_DICDI8.154e-4044.57Glycogen phosphorylase 1 OS=Dictyostelium discoide... [more]
PYGB_HUMAN1.347e-3444.31Glycogen phosphorylase, brain form OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YD19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260081 ID=DY260081; Name=DY260081; organism=Citrus clementina; type=EST; length=942bp
CTATCATCTCTCTTTACTCACTCACTCTCATGATATCGTGATCGTCAGTC
TCTGATATTTTTTTTTCCCCCTTTAGAAACTCAATCACTTCAAAGTTCTT
GTTCGTTTTCCTCTTCTTAGCATATTTTTTCTTTCTCGCTCCAATACTTT
CTTCATAACAATATCTTCTCTCACACTTCATTTACATTTTAAACTGCTCT
GTCGCTTCTGAAACAAGCAATAATTTGTGGAATCAAATGGCGGATGCGAA
AGCAAACGGAAAGAATGAGGCGGCCAAACTGGCGAAAATTCCTGCGGCTG
CGAATCCATTGGCTAATGAACCATCGGCGATTGCATCAAATATAAGTTAC
CACGTGCAGTACAGTCCTCATTTCTCGCCGACTAAGTTCGAGCCGGAGCA
AGCTTTCTTTGCCACGGCGGAGAGTGTCCGCGATCGTCTTATTCAACAAT
GGAATGAGACATACCACCATTTTAATAAAGTTGATCTGAAGCAAACATAC
TACCTATCAATGGAATTTCTTCAAGGAAGGACTTTGACTAATGCAATTGG
CAGTTTGGACATTCAGAATGCATATGCTGATGCTTTAAATAATTTGGGGC
ATGTCCTTGAGGAGATAGCTGAACAGGAAAAAGATGCTGCACTAGGAAAT
GGTGGGCTGGGCAGGCTAGCTTCATGCTTCTTAGACTCCATGGCAACATT
GAATTTGCCTGCCTGGGGTTATGGTTTGAGATACCGGTATGGGCTGTTCA
AGCAGAAGATCACCAAGCAGGGTCCAGAAGAAGTTGCTGAAGAATGGCTT
GAGAAATTTAGTCCTTGGGAAATTGTCAGGCATGATGTGGTATTTCCGGT
CCGATTTTTTGGGAGTGTTATGGTTAATCCCAATGAAACAAAAAAAGGGG
TGGGGGGGGAAAGTTGTCCCACCCCTAACCCTATGAAAAACC
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