DY260082

Overview
NameDY260082
Unique NameDY260082
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1038
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260082 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.318e-25
Identity = 82/283 (28.98%), Postives = 118/283 (41.70%), Query Frame = 3
Query:   21 MDTSNDAAWV---PCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYGS-STIAANLSQDTISLATDIVPGYTFGCIQKATGNSVPPQXXXXXXXXXXXXXAQTQNLYQSTFSYCLPSFKALSFSGSLRLGPI--GQPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRPVGSNLTMTSPGGFHTCYSGP-----IVAPTITLMFSRMNLTPPQDNLLFTALKG 836
            MDT +D  W    PCT C    + +FN   S++F  L C++  C+ +P+ TC    C +   YG  ST    ++ +T +  T  VP   FGC +   G                   +    L    FSYC+ S+ + S S +L LG    G P+    T L+ +    + YY+ L  I VG   + IP    Q       G IIDSGT  T L   AY AV   F   +       S  G  TC+  P     +  P I++ F    L   + N+L +  +G
Sbjct:  113 MDTGSDLIWTQCEPCTQCFSQPTPIFNPQDSSSFSTLPCESQYCQDLPSETCNNNECQYTYGYGDGSTTQGYMATETFTFETSSVPNIAFGCGEDNQGFG--QGNGAGLIGMGWGPLSLPSQLGVGQFSYCMTSYGSSSPS-TLALGSAASGVPEGSPSTTLIHSSLNPTYYYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQINLPTVDESSSGLSTCFQQPSDGSTVQVPEISMQFDGGVLNLGEQNILISPAEG 392          
BLAST of DY260082 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 9.447e-24
Identity = 80/288 (27.78%), Postives = 121/288 (42.01%), Query Frame = 3
Query:   21 MDTSNDAAWV---PCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYG-SSTIAANLSQDTISLATDIVPGYTFGCIQKATGNSVPPQXXXXXXXXXXXXXAQTQNLYQSTFSYCLPSFKALSFSGSLRLGPI------GQPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTG-AGTIIDSGTVFTRLVAPAYTAVRDVFRRPVGSNLTMTSPGGFHTCYSGP-----IVAPTITLMFSRMNLTPPQDNLLFTALKG 836
            MDT +D  W    PCT C   S+ +FN   S++F  L C +  C+ + +PTC    C +   YG  S    ++  +T++  +  +P  TFGC +   G                   +    L  + FSYC+    + S   +L LG +      G P     T L+++ +  + YY+ L  + VG   + I P A   N   G  G IIDSGT  T  V  AY +VR  F   +   +   S  GF  C+  P     +  PT  + F   +L  P +N   +   G
Sbjct:  112 MDTGSDLIWTQCQPCTQCFNQSTPIFNPQGSSSFSTLPCSSQLCQALSSPTCSNNFCQYTYGYGDGSETQGSMGTETLTFGSVSIPNITFGCGENNQG--FGQGNGAGLVGMGRGPLSLPSQLDVTKFSYCMTPIGS-STPSNLLLGSLANSVTAGSPN----TTLIQSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQINLPVVNGSSSGFDLCFQTPSDPSNLQIPTFVMHFDGGDLELPSENYFISPSNG 392          
The following BLAST results are available for this feature:
BLAST of DY260082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP2_NEPGR1.318e-2528.98Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
NEP1_NEPGR9.447e-2427.78Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YD21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260082 ID=DY260082; Name=DY260082; organism=Citrus clementina; type=EST; length=1038bp
CACAAACCTTGCTCATGGCCATGGATACTAGCAATGATGCCGCTTGGGTT
CCATGCACTGGCTGTGTTGGCTGCTCTTCCACCGTTTTTAATTCTGCTCA
ATCCACCACATTCAAAAACCTTGGTTGCCAAGCTGCTCAATGCAAGCAGG
TACCCAATCCCACCTGCGGGGGTGGCGCGTGTGCATTCAATTTGACCTAC
GGCAGCTCCACCATTGCCGCAAACCTCTCACAGGACACTATCTCCCTGGC
CACTGATATAGTCCCTGGTTACACCTTCGGCTGCATCCAAAAGGCCACGG
GCAACTCGGTGCCGCCCCAAGGCCTGTTGGGCCTGGGTCGTGGCTCATTA
TCCCTTTTGGCACAAACACAGAACCTCTATCAGTCCACTTTTTCTTACTG
TTTGCCCAGCTTCAAGGCACTTAGCTTTTCTGGGTCATTAAGATTAGGAC
CCATTGGTCAGCCCAAGCGGATTAAGTATACACCATTGCTTAAAAACCCA
AGAAGATCATCACTTTACTATGTTAATTTGTTGGCCATTAGGGTTGGCAG
AAGAGTTGTTGATATCCCACCTGGTGCCTTACAGTTCAATCCCACAACCG
GCGCTGGCACTATTATTGATTCTGGCACAGTTTTTACCAGACTGGTGGCG
CCCGCTTACACCGCAGTGAGAGACGTGTTCCGTAGACCCGTAGGGAGTAA
CTTAACAATGACCTCCCCAGGCGGATTCCACACGTGCTACTCCGGTCCAA
TCGTTGCACCGACAATCACGTTGATGTTCTCACGCATGAACCTGACTCCA
CCACAAGACAACCTTCTATTCACAGCCCTGAAGGGAGCATCACATCTTTG
GCCATGGCTGCGCCTCCAACAACCTCCAATCAATGCTTAATGGCCTTCCC
AAAATCCACCAACCAAACCCACCAAATCCCTCATGAAGGTTCCCCATTTA
AGGGCCGGTTGCCCCCCCGTGACCCTTTCCCCCTTAAAAAAAAAAAATTT
GGAAAAAAAATTTTGACACTTTTTTTCCCCTTTTTCCT
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