DY260095

Overview
NameDY260095
Unique NameDY260095
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length887
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10305 contig Ccv1_Contig10305:248..1134. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260095 vs. ExPASy Swiss-Prot
Match: SAR1A_ARATH (GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.183e-69
Identity = 132/170 (77.65%), Postives = 138/170 (81.18%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 511
            LFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESKK            +VPFL+LGNKIDIPYAASE+ELRYHLGLSNFTTGKGKVNL DSNVRPLEVFMCSIVRKMGYG+GFKW+SQYIK
Sbjct:   24 LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLASVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWVSQYIK 193          
BLAST of DY260095 vs. ExPASy Swiss-Prot
Match: SAR1A_BRACM (GTP-binding protein SAR1A OS=Brassica campestris GN=SAR1A PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.708e-68
Identity = 131/170 (77.06%), Postives = 136/170 (80.00%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 511
            LFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESKK             VPFL+LGNKIDIPYAASE+ELRYHLGLSNFTTGKGKV+L  SNVRPLEVFMCSIVRKMGYG+GFKWLSQYIK
Sbjct:   24 LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVDLVGSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193          
BLAST of DY260095 vs. ExPASy Swiss-Prot
Match: SAR1B_ARATH (GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.221e-67
Identity = 128/169 (75.74%), Postives = 134/169 (79.29%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            LFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESK+             VPFL+LGNKIDIPYAASE+ELRYHLGL+NFTTGKGKV L DS VRPLEVFMCSIVRKMGYG+GFKWLSQYI
Sbjct:   24 LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKRELDALLSDEALATVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVTLGDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192          
BLAST of DY260095 vs. ExPASy Swiss-Prot
Match: SAR2_SOLLC (GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 6.075e-66
Identity = 124/170 (72.94%), Postives = 133/170 (78.24%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 511
            LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG IKFKAFDLGGHQIARRVW                   ERF E+KK            NVPFL+LGNKIDIPYAASE+ELRYHLGL+  TTGKG +NLA +NVRP+EVFMCSIVRKMGYG+GFKW+SQYIK
Sbjct:   24 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGNIKFKAFDLGGHQIARRVWRDYYAKVDAVVYLVDANDRERFPEAKKELDGLLSDESLTNVPFLILGNKIDIPYAASEDELRYHLGLTGVTTGKGNINLAGTNVRPIEVFMCSIVRKMGYGEGFKWMSQYIK 193          
BLAST of DY260095 vs. ExPASy Swiss-Prot
Match: SAR1B_BRACM (GTP-binding protein SAR1B OS=Brassica campestris GN=SAR1B PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 8.772e-65
Identity = 127/171 (74.27%), Postives = 133/171 (77.78%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLA--DSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            LFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERF+ESKK             VPFL+LGNKID PYAASE+ELRYHLGL+NFTTGKGKV  A  DS VRPLEVFMCSIVRKMGYG+GFKWLSQYI
Sbjct:   24 LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFSESKKELDALLSDDALATVPFLILGNKIDNPYAASEDELRYHLGLTNFTTGKGKVTTAGGDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYI 194          
BLAST of DY260095 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.606e-50
Identity = 109/175 (62.29%), Postives = 121/175 (69.14%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGN---KIDIPYAASEE-ELRYHLGLSNFT-TGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 511
            LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESKK               FL L N   +I+ P     +   RYH+G +  +   +GKVNLADSNVRP+EVFMCSIVR+MGYG+GF+W+SQYIK
Sbjct:   24 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLSGWSSLAHCFLFLDNWVTRIEHPICCLRKMNWRYHMGANGASPLARGKVNLADSNVRPVEVFMCSIVRQMGYGEGFRWMSQYIK 198          
BLAST of DY260095 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.094e-46
Identity = 95/169 (56.21%), Postives = 116/169 (68.64%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG++KF  +DLGGHQ ARR+W                   ERFAE++             +VPFL+LGNKID P A SEEELR  +GL   TTGKGKV L D  +RP+E+FMCS+V + GYG+GF+W+SQYI
Sbjct:   24 LFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGQVKFTTYDLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEELSSVPFLILGNKIDAPGAVSEEELRQAIGLYQ-TTGKGKVPLKD--IRPIEIFMCSVVMRQGYGEGFRWISQYI 189          
BLAST of DY260095 vs. ExPASy Swiss-Prot
Match: SAR1B_RAT (GTP-binding protein SAR1b OS=Rattus norvegicus GN=Sar1b PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.032e-45
Identity = 93/169 (55.03%), Postives = 110/169 (65.09%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            +FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG V+L + N RPLEVFMCS++++ GYG+GF+W++QYI
Sbjct:   29 VFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHLQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197          
BLAST of DY260095 vs. ExPASy Swiss-Prot
Match: SAR1B_PIG (GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.032e-45
Identity = 93/169 (55.03%), Postives = 110/169 (65.09%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            +FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG V+L + N RPLEVFMCS++++ GYG+GF+W++QYI
Sbjct:   29 VFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197          
BLAST of DY260095 vs. ExPASy Swiss-Prot
Match: SAR1B_MOUSE (GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.032e-45
Identity = 93/169 (55.03%), Postives = 110/169 (65.09%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            +FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG V+L + N RPLEVFMCS++++ GYG+GF+W++QYI
Sbjct:   29 VFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197          
The following BLAST results are available for this feature:
BLAST of DY260095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SAR1A_ARATH1.183e-6977.65GTP-binding protein SAR1A OS=Arabidopsis thaliana ... [more]
SAR1A_BRACM1.708e-6877.06GTP-binding protein SAR1A OS=Brassica campestris G... [more]
SAR1B_ARATH3.221e-6775.74GTP-binding protein SAR1B OS=Arabidopsis thaliana ... [more]
SAR2_SOLLC6.075e-6672.94GTP-binding protein SAR2 OS=Solanum lycopersicum G... [more]
SAR1B_BRACM8.772e-6574.27GTP-binding protein SAR1B OS=Brassica campestris G... [more]
SAR1_TOBAC1.606e-5062.29GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]
SAR1_USTMA4.094e-4656.21Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]
SAR1B_RAT2.032e-4555.03GTP-binding protein SAR1b OS=Rattus norvegicus GN=... [more]
SAR1B_PIG2.032e-4555.03GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B P... [more]
SAR1B_MOUSE2.032e-4555.03GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260095 ID=DY260095; Name=DY260095; organism=Citrus clementina; type=EST; length=887bp
CTTGTTTTTAGGGCTTGATAATGCTGGAAAAACAACGTTGCTTCACATGT
TGAAAGATGAGAGATTGGTTCAACATCAGCCAACACAGTATCCCACATCG
GAAGAGCTTAGTATTGGGAAAATTAAGTTCAAGGCGTTTGATTTGGGAGG
CCATCAGATTGCTAGGAGAGTCTGGAAGGATTACTATGCGAAGGTTGATG
CTGTGGTATACCTAGTGGATGCCTATGACAAAGAGAGGTTTGCAGAATCA
AAGAAAGAACTGGATGCACTCCTTTCTGATGAGGCATTGGCCAATGTTCC
TTTTCTTGTGTTAGGAAACAAGATTGACATCCCTTATGCTGCTTCTGAGG
AAGAGTTGCGTTACCACCTTGGCCTATCAAATTTCACCACTGGGAAGGGG
AAGGTTAATCTAGCGGACTCAAATGTCCGTCCACTGGAGGTGTTTATGTG
TAGCATAGTTCGCAAAATGGGATATGGTGATGGTTTCAAATGGCTCTCTC
AATACATTAAGTAGGGTAATGCTCAGGAAGTGTTATAGAAGTAATGCAGA
TTTCAAAATTTCACCCATGCCTACTACACCCTGTTTCACCAAAAAAATTG
TGTTTATCTACTTGTTTGATCTTTTATTCTGTTAGTGGGACTTGAACCAG
AGGTACTGTGTTTTGAGTCCGGTTGGAAGGTGGTAGTTATGTTACTGCTC
CGTAAAATTACCTGTGGATAGCAGGTCCTTAACCGGGAATTGAAGTTTTG
TCAATTACCTTGCCCTATTGCCAGGTCCGCCTGGGAACCCAAATTAAAAT
ATTTATTGGTAATATTTTGTTAAGGTTAATTTCAATTCCAAAACATCCCT
TAAATTATTGGAAACCTTAATTACCTTTCTAATTGGG
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