DY260101

Overview
NameDY260101
Unique NameDY260101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length975
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1413 contig Ccv1_Contig1413:1..975. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260101 vs. ExPASy Swiss-Prot
Match: WIT2_ARATH (WPP domain-interacting tail-anchored protein 2 OS=Arabidopsis thaliana GN=WIT2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.429e-18
Identity = 57/142 (40.14%), Postives = 83/142 (58.45%), Query Frame = 2
Query:  359 MTVLTRVDLDLAYSSEKXXXXXXXXXXXXARGDDLETLVMENSDVSATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVDVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMPSAKFQRVLSYFIPG 784
            + +LT++++D AY+SEK            A  +DLE   M   D S  S EKAL +DLL GIL+SE++EV+ +LD +  +IVD  +KISSCKH   +      +E KL +   SLK+S+  VSE+ +  A+ +R L Y   G
Sbjct:   24 LRMLTKLEIDSAYTSEKLMNLHVLLMHLLAWDNDLEG--MGTLDSSPASFEKALTFDLLCGILESEVKEVDEVLDVLEAQIVDTSYKISSCKHGNYIV-----IEGKLGESAESLKQSRGQVSEITLQLAQLRRTLHYIRNG 158          
BLAST of DY260101 vs. ExPASy Swiss-Prot
Match: WIT1_ARATH (WPP domain-interacting tail-anchored protein 1 OS=Arabidopsis thaliana GN=WIT1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.643e-14
Identity = 61/181 (33.70%), Postives = 86/181 (47.51%), Query Frame = 2
Query:  257 DDTCIGNPEPDKGCLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKXXXXXXXXXXXXARGDDLETLVME----------NSDVSATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVDVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMPSAKFQRVLS 769
            +D+ +  P   K    E    +G  +   Q+     VLT+V+LD A+ SEK             R +D E+ V +          N D    S EKAL +DLL  IL+SE++E+E LL  +  EI      IS  +H  E F     +E KL+D E SL +  E V E+K  S+ FQR+ S
Sbjct:   16 NDSLVPEPSSTKESFFEDLSLTG-QVMNPQLSSAGEVLTKVELDFAFVSEKLVNLSLLTMQLGTRENDFESFVSKKEEDEEEPSSNVDDDDDSAEKALEFDLLSSILNSEVKELESLLGFLQNEIQSARVMISPFQHDGEAFL---DLEGKLNDTEQSLGQLMEQVVEMKKQSSNFQRLSS 192          
The following BLAST results are available for this feature:
BLAST of DY260101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
WIT2_ARATH1.429e-1840.14WPP domain-interacting tail-anchored protein 2 OS=... [more]
WIT1_ARATH3.643e-1433.70WPP domain-interacting tail-anchored protein 1 OS=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YF02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260101 ID=DY260101; Name=DY260101; organism=Citrus clementina; type=EST; length=975bp
CGCAGTAAGCAATCTCCACTTGTCCTGACTCTGAAAACAAGACAACTACC
CCTCCGGCTCATTTTAGACGCCCCCAGACCCAGTCAACTGATCACGGGAA
CTCAACGGTATCATGAAATGAGAGGTCGTTAAAAAGAGTTTTGCGAACTA
TCTCTTGTCTGAATCTGTGATCCCAACACAACCCTTTGAAGATATTTGCA
TAATTAAGGCTGCTTAACCAAAGAATTGATCAATGGGTATGAATGAACAA
GCTGTTGATGACACGTGCATTGGAAATCCAGAGCCAGACAAAGGTTGTTT
ACATGAAGTTACTTTATCAAGCGGAATTGACATGCAAGAGAAACAGATAG
ACTGTACTATGACAGTTTTAACTAGAGTAGACTTGGACTTGGCATATTCA
TCCGAGAAGTTGGTAAATTTGCATGTACTTCTGATGTATCTTTTGGCAAG
GGGGGATGATCTTGAGACATTGGTCATGGAGAATAGCGATGTTTCAGCAA
CCTCCATTGAGAAGGCATTGGTATATGATCTTTTATTTGGTATTTTAGAT
TCTGAGTTGAGAGAGGTGGAAAGATTATTGGATACTATCCATGTGGAGAT
TGTTGATGTCCATCATAAAATATCCTCCTGCAAACATTTGAGAGAAGTAT
TTACTATAATGGAGAAGATGGAGAAGAAATTGCATGATTGTGAAGGATCA
TTAAAGGAGTCTCAAGAGCATGTTTCCGAGTTGAAGATGCCGTCCGCCAA
GTTTCAGAGGGTACTATCATATTTTATACCTGGTAATTAGATGTTACCAG
GTTGCATATATGAAATCTGTTCCCCCGGGAACAAAAAACCAAAGAAGCCT
GATATTTTAGGGTTAAGTCCCCCCCGACCCTTCCCCCCTTTCCGTTGGTA
GGCCTGGCCCAACAGGGTTACATGGAAGAGGGCCTTGGAATTTTCCGGCC
AAAGGGGCCAATTACCCAACCTTTA
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