DY260104
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY260104 vs. ExPASy Swiss-Prot
Match: CRS1_ORYSJ (Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 2.075e-30 Identity = 60/140 (42.86%), Postives = 97/140 (69.29%), Query Frame = 2 Query: 2 EERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQM 421 EER +FRK+GL+M +LLGRRGVF+G +E +H HWK++E+VK+I K Q ++ LE E+GG L+++++ + +A+++YRGK+Y+RP+ P NLLTKR+AL RSIE+QR+ ++ + + L+ E+ + Sbjct: 569 EERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPSNLLTKREALQRSIEVQRRGSMKYFAQERKKSIDELKRELRNV 708
BLAST of DY260104 vs. ExPASy Swiss-Prot
Match: CRS1_MAIZE (Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.756e-29 Identity = 60/137 (43.80%), Postives = 96/137 (70.07%), Query Frame = 2 Query: 2 EERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEI 412 EE+ MFR++G +M +LLGRRG+FDG +E +H HWK++E+VK+I K Q A LE E+GG+L++V+K++ +A+++YRGK+Y+RP+ NLLTKR+AL RSIE+QR+ ++ V + + L+ ++ Sbjct: 567 EEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLLTKREALRRSIEVQRRGSMKYFVRERQKSILELKRKL 703
BLAST of DY260104 vs. ExPASy Swiss-Prot
Match: CRS1_ARATH (Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 2.294e-29 Identity = 63/120 (52.50%), Postives = 90/120 (75.00%), Query Frame = 2 Query: 2 EERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPST-LRPKNLLTKRKALARSIELQRQEAL 358 EER R++GL+M + L+LGRRGVF G +E +H HWK+RE+ K+I K F + A ALE ES GVL+S++K+ +G+A+++YRGK+Y+RPS+ L +NLLTKRKAL RS+ +QR +L Sbjct: 573 EERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVVMQRLGSL 692
BLAST of DY260104 vs. ExPASy Swiss-Prot
Match: Y3544_ARATH (Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 5.663e-20 Identity = 49/140 (35.00%), Postives = 88/140 (62.86%), Query Frame = 2 Query: 2 EERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPST--LRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIE 415 EE F + K+GL+ K ++ +GRRG++ G + NMHLHWK + +++++K T D+ K+IA+ L +GG+++ V +G +++YRGK+Y +P T + P+ L ++KAL +S A+ K++ LE L+++ E Sbjct: 180 EEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDV---HEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQAE 316 The following BLAST results are available for this feature:
BLAST of DY260104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY260104 ID=DY260104; Name=DY260104; organism=Citrus clementina; type=EST; length=958bpback to top |