DY260104

Overview
NameDY260104
Unique NameDY260104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length958
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1415 contig Ccv1_Contig1415:1..958. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260104 vs. ExPASy Swiss-Prot
Match: CRS1_ORYSJ (Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.075e-30
Identity = 60/140 (42.86%), Postives = 97/140 (69.29%), Query Frame = 2
Query:    2 EERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQM 421
            EER +FRK+GL+M   +LLGRRGVF+G +E +H HWK++E+VK+I K     Q    ++ LE E+GG L+++++ +  +A+++YRGK+Y+RP+   P NLLTKR+AL RSIE+QR+ ++       + +   L+ E+  +
Sbjct:  569 EERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPSNLLTKREALQRSIEVQRRGSMKYFAQERKKSIDELKRELRNV 708          
BLAST of DY260104 vs. ExPASy Swiss-Prot
Match: CRS1_MAIZE (Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.756e-29
Identity = 60/137 (43.80%), Postives = 96/137 (70.07%), Query Frame = 2
Query:    2 EERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEI 412
            EE+ MFR++G +M   +LLGRRG+FDG +E +H HWK++E+VK+I K     Q    A  LE E+GG+L++V+K++  +A+++YRGK+Y+RP+     NLLTKR+AL RSIE+QR+ ++   V   + +   L+ ++
Sbjct:  567 EEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLLTKREALRRSIEVQRRGSMKYFVRERQKSILELKRKL 703          
BLAST of DY260104 vs. ExPASy Swiss-Prot
Match: CRS1_ARATH (Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.294e-29
Identity = 63/120 (52.50%), Postives = 90/120 (75.00%), Query Frame = 2
Query:    2 EERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPST-LRPKNLLTKRKALARSIELQRQEAL 358
            EER   R++GL+M + L+LGRRGVF G +E +H HWK+RE+ K+I   K F +    A ALE ES GVL+S++K+ +G+A+++YRGK+Y+RPS+ L  +NLLTKRKAL RS+ +QR  +L
Sbjct:  573 EERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVVMQRLGSL 692          
BLAST of DY260104 vs. ExPASy Swiss-Prot
Match: Y3544_ARATH (Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.663e-20
Identity = 49/140 (35.00%), Postives = 88/140 (62.86%), Query Frame = 2
Query:    2 EERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPST--LRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIE 415
            EE F + K+GL+ K ++ +GRRG++ G + NMHLHWK  + +++++K  T D+ K+IA+ L   +GG+++ V    +G  +++YRGK+Y +P T  + P+  L ++KAL +S       A+ K++  LE     L+++ E
Sbjct:  180 EEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDV---HEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQAE 316          
The following BLAST results are available for this feature:
BLAST of DY260104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CRS1_ORYSJ2.075e-3042.86Chloroplastic group IIA intron splicing facilitato... [more]
CRS1_MAIZE1.756e-2943.80Chloroplastic group IIA intron splicing facilitato... [more]
CRS1_ARATH2.294e-2952.50Chloroplastic group IIA intron splicing facilitato... [more]
Y3544_ARATH5.663e-2035.00Uncharacterized CRM domain-containing protein At3g... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YF05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260104 ID=DY260104; Name=DY260104; organism=Citrus clementina; type=EST; length=958bp
CGAGGAGAGATTTATGTTTCGCAAGCTTGGTCTGAGGATGAAGGCTTTCT
TACTTCTGGGTAGGCGTGGAGTTTTTGATGGTACTGTGGAGAACATGCAC
TTGCACTGGAAGTACCGGGAATTGGTTAAGATAATTGTGAAAGTTAAAAC
TTTTGACCAGGCCAAAAAAATAGCATTAGCACTTGAAGCTGAAAGTGGAG
GTGTGTTGGTTTCAGTAGACAAAATCTCCAAAGGCTATGCTATGGTTGTA
TACAGGGGAAAGGACTACCAGCGACCTTCCACATTGAGGCCAAAGAATCT
TTTGACTAAGAGGAAGGCTTTGGCGCGTTCTATTGAACTTCAAAGACAAG
AGGCTCTCCTAAAGCACGTTGCAACTCTGGAGAGTAACGCGGGGAGACTA
AGATCTGAAATTGAACAAATGAACAGCGTGAAGGGCACTGGAGATGAGCA
GTTGTACGACAAACTAGATTCTGCTTATGCCACAGAAGATGATGACTCTG
AGGATGAAGGAGATGAGGCATATCTTGAGATGTATGCAGGTGGAAATGAC
AATGAAGATGAAATTGATAACTCAACTCACAATCTCGAAATGGAATCCGA
TTTTCCTTACCATGCCCCAGATCAGGAGTCTGAAAAGAACCTATGGATTC
TGAATCCGAAGCATACACGGTTCACCGTACCCATTGCCGCAGTACAAACA
TTGTAAAAGAAGATAACCTTTCTATTATCCTAAAATGGTGAAAAATAACC
ACCCGTCCGTCATTGGCTGGAATAAAACTGGCAAACCCCCCACCCGCCCC
ACCTTTAAAAGTTGTCCCCCCCCCTAAAAGAAGGGCCCTTTGGAAAAAAA
AATTTTGCCCCCCCTGCCCTTGGTTTAAAAAAAAACCCCCCCCCCCTTTC
CCCCTCCCGGCCAATAAAATTTTGTTTTATTCCGGAAAAGGGGGGGTTTC
CCACCCCC
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