DY260109

Overview
NameDY260109
Unique NameDY260109
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1113
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260109_ssr308 microsatellite DY260109_ssr308:308..319. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260109 vs. ExPASy Swiss-Prot
Match: RLA2B_MAIZE (60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.733e-18
Identity = 45/62 (72.58%), Postives = 58/62 (93.55%), Query Frame = 3
Query:   66 MKVIAAYFLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 251
            MKVIAAY LAVLGGN +P+ADD+++IL SVGAEAD+E++EFLL+E+K KDITE+IA+GRE+L
Sbjct:    1 MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRERL 62          
BLAST of DY260109 vs. ExPASy Swiss-Prot
Match: RLA2_PARAR (60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.263e-18
Identity = 51/112 (45.54%), Postives = 67/112 (59.82%), Query Frame = 3
Query:   66 MKVIAAYFLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFNLFD 401
            MKVIAA+ LA+LGGN +P+ +DL++IL SVGA+ADD++IE LLS+VKGKDITELIASGRE+L                                        D+++GF+LFD
Sbjct:    1 MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRERLASVPSGGGVAVAAAAGGGGGDAPAAAAEEPKKEEKSEEESDEELGFSLFD 112          
BLAST of DY260109 vs. ExPASy Swiss-Prot
Match: RLA2A_MAIZE (60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.123e-17
Identity = 52/112 (46.43%), Postives = 61/112 (54.46%), Query Frame = 3
Query:   66 MKVIAAYFLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFNLFD 401
            MK +AAY LAVL GNA+PSADDL  IL SVG E D+E++E LLS++ GKDITELIA+GREK                                         DDDMGF+LFD
Sbjct:    1 MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGREKFASVPCGGGGVAVAAAAPAAGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 112          
BLAST of DY260109 vs. ExPASy Swiss-Prot
Match: RLA24_ARATH (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana GN=RPP2D PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.123e-17
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 3
Query:   66 MKVIAAYFLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 251
            MKV AA+ LAVLGGNANPSAD++++I+G+VGA+ D E IE LL EV GKDI ELIASGREKL
Sbjct:    1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKL 62          
BLAST of DY260109 vs. ExPASy Swiss-Prot
Match: RLA22_ARATH (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.118e-16
Identity = 42/62 (67.74%), Postives = 52/62 (83.87%), Query Frame = 3
Query:   66 MKVIAAYFLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 251
            MKV+AAY LAVL G A+P++ D++ ILGSVGAE +D +IE LL EVKGKD+ ELIA+GREKL
Sbjct:    1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKL 62          
BLAST of DY260109 vs. ExPASy Swiss-Prot
Match: RLA21_ARATH (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 4.718e-16
Identity = 41/62 (66.13%), Postives = 52/62 (83.87%), Query Frame = 3
Query:   66 MKVIAAYFLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 251
            MKV+AA+ LAVL G A+P+  D+++ILGSVGAE +D +IE LL EVKGKD+ ELIA+GREKL
Sbjct:    1 MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKL 62          
BLAST of DY260109 vs. ExPASy Swiss-Prot
Match: RLA2_BRAFL (60S acidic ribosomal protein P2 OS=Branchiostoma floridae PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.342e-15
Identity = 39/62 (62.90%), Postives = 52/62 (83.87%), Query Frame = 3
Query:   66 MKVIAAYFLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 251
            M+ +AAY LAVLGGNANPSA D++ ILGSVG +A+DER+  ++ E+KGKDI E++A+GR KL
Sbjct:    1 MRYVAAYLLAVLGGNANPSAGDIKKILGSVGIDAEDERLNKVIGELKGKDIEEVMAAGRGKL 62          
BLAST of DY260109 vs. ExPASy Swiss-Prot
Match: RLA23_ARATH (60S acidic ribosomal protein P2-3 OS=Arabidopsis thaliana GN=RPP2C PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.533e-14
Identity = 38/62 (61.29%), Postives = 50/62 (80.65%), Query Frame = 3
Query:   66 MKVIAAYFLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 251
            MKVIAA+ LA LGGN NP+++DL+ IL SVGAE D+ +I+ L S +K  D+TELIA+GREK+
Sbjct:    1 MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGREKM 62          
BLAST of DY260109 vs. ExPASy Swiss-Prot
Match: RLA2_ALTAL (60S acidic ribosomal protein P2 OS=Alternaria alternata GN=ALTA5 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.883e-13
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 3
Query:   66 MKVIAAYFLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 251
            MK +AAY L  LGGN +PSA D++ +L SVG EAD +R++ L+SE++GKDI ELIASG EKL
Sbjct:    1 MKHLAAYLLLGLGGNTSPSAADVKAVLESVGIEADSDRLDKLISELEGKDINELIASGSEKL 62          
BLAST of DY260109 vs. ExPASy Swiss-Prot
Match: RLA25_ARATH (60S acidic ribosomal protein P2-5 OS=Arabidopsis thaliana GN=RPP2E PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.883e-13
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   66 MKVIAAYFLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 251
            MKV+AAY LA L GN NPS  DL+ I+ SVGAE D E+I+   S +K +D+TELIA GREK+
Sbjct:    1 MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGREKM 62          
The following BLAST results are available for this feature:
BLAST of DY260109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RLA2B_MAIZE1.733e-1872.5860S acidic ribosomal protein P2B OS=Zea mays GN=RP... [more]
RLA2_PARAR2.263e-1845.5460S acidic ribosomal protein P2 OS=Parthenium arge... [more]
RLA2A_MAIZE1.123e-1746.4360S acidic ribosomal protein P2A OS=Zea mays GN=RP... [more]
RLA24_ARATH1.123e-1772.5860S acidic ribosomal protein P2-4 OS=Arabidopsis t... [more]
RLA22_ARATH2.118e-1667.7460S acidic ribosomal protein P2-2 OS=Arabidopsis t... [more]
RLA21_ARATH4.718e-1666.1360S acidic ribosomal protein P2-1 OS=Arabidopsis t... [more]
RLA2_BRAFL2.342e-1562.9060S acidic ribosomal protein P2 OS=Branchiostoma f... [more]
RLA23_ARATH7.533e-1461.2960S acidic ribosomal protein P2-3 OS=Arabidopsis t... [more]
RLA2_ALTAL4.883e-1361.2960S acidic ribosomal protein P2 OS=Alternaria alte... [more]
RLA25_ARATH4.883e-1359.6860S acidic ribosomal protein P2-5 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YF12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260109 ID=DY260109; Name=DY260109; organism=Citrus clementina; type=EST; length=1113bp
CTCACACACTCCCCTTTGAGAGAAAAGTCGATCTTTATCGTCTCACCTCT
CTGCTATAAGCAAAAATGAAGGTGATCGCTGCTTATTTTCTCGCCGTTTT
GGGTGGCAACGCCAACCCATCGGCCGATGACTTGCAGAACATTCTTGGAT
CAGTTGGAGCTGAAGCTGATGATGAGAGAATAGAGTTTCTCTTATCAGAA
GTCAAGGGCAAGGATATTACCGAGCTAATTGCATCCGGAAGGGAGAAGTT
GGCATCAGTGCCATCAGGTGGTGGTGTTGCTGTTGCTGCAGCAGCACCTG
CTGCAGGTGCTGCTGCTGCTCCAGCTGCTGAGGCTAAGAAAGAGGAGAAG
GTCGAGGAGAAGGAAGAATCTGATGATGACATGGGTTTCAACCTTTTCGA
CTAAGCTCTCAATGTTGCTTTTTCTCGCATGAACGATTATTACATTTCGG
TCATTAGTGTTTTTATTCGATTGTCACCAGTTTTTGGTCTGCAAGTGCAA
ATGGTTTTACCATTTTACGAGATTGTTTGAACTTCTTGCAAGTTTTACTT
ACTATTTGCCGAAAAATAAACATCACTGTCAAAATTCCCTTTTCATTCAC
CAAAATTCGACCCATCCATAAACTACAAAATCCAGTCCAGACGCACCTAA
ACTAACTCGCTTTTCTTCTCCCATACACGCATTCATAGCAAAAAGATTCA
ATAACCTTTCCCCACCCACCGGTCCCCATAAGCTAAAATGACTCAGTCTT
TTGCACCCTAACCCCACCCCATCCACGCACAATCACGAACTCCGTATACA
TTATCTCTTCACTCCACACTTCCTCCCCCCCAAAAAATAATATATCACTA
ATTCTTATTTATCCCTTATATATCTCTTAAGTATAATACTAACCCAGACT
AACATTATATCCTTACGCCCCGGCAACCATTTCTGTCTACCTCGCATTCC
TTCCCTCCCATACCACACTGAAACAACTCAGCATCCAACCAACCTCCTTC
CACTACGCACTTACTCTCCGACTTCCCGGCAACCCCTCCCCAAACCCCTA
CCACACACCCCTCCCTCTCTGCCTACTCACTCCAACAAAGGCCTGTCATG
ACTCTCCCCACCG
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