DY260114

Overview
NameDY260114
Unique NameDY260114
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length980
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH61_MAIZE (Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.733e-24
Identity = 78/166 (46.99%), Postives = 98/166 (59.04%), Query Frame = 1
Query:  103 MTGKDFECVSLGHAEKITVSKDQTVILLC---KACIGHEKLLQWRFTMEN-LQDFPEESC----TKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXXE-GVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLE 564
            M  ++FE   LG  +K+TVSKD TVIL     K  I  E+  Q R  +EN   D+ +E       K S   AV+K+ G+++AEV EKKDR            E G+V    ++LLYA KELDKLQTAN  QKIGVQ IQ AL+  V  IA +AGV+G+ VV KLLE
Sbjct:  340 MNLENFEPHMLGTCKKVTVSKDDTVILDGAGDKKSI-EERAEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLQTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLE 504          

HSP 2 Score: 39.2762 bits (90), Expect = 1.733e-24
Identity = 16/33 (48.48%), Postives = 23/33 (69.70%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFT 100
            +N +    K C +K PGFGE+RKA+L+D+A  T
Sbjct:  297 INKLRAGIKVCAVKAPGFGENRKANLQDLAILT 329          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH62_CUCMA (Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.418e-24
Identity = 72/163 (44.17%), Postives = 89/163 (54.60%), Query Frame = 1
Query:  133 LGHAEKITVSKDQTVIL-----------LCKACIGHEKLLQWRFTMENLQDFPEESCTKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXXE-GVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLEGSKP 576
            LG  +KIT+SKD TVIL            C+      +L    +  E LQ    E   K S   AV+K+ G+++AEV EKKDR            E G+V    ++LLYA KELDKL TAN  QKIGVQ IQ AL+  V  IA +AGV+G+ VV KLLE   P
Sbjct:  348 LGSCKKITISKDDTVILDGAGDKKSIEERCEQIRSAIELSTSDYDKEKLQ----ERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLSTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDNP 506          

HSP 2 Score: 40.4318 bits (93), Expect = 8.418e-24
Identity = 19/36 (52.78%), Postives = 22/36 (61.11%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFTS*Q 109
            LN +    K C IK PGFGE+RKA L D+A  T  Q
Sbjct:  295 LNKLRAGIKVCAIKAPGFGENRKAGLHDLAVLTGGQ 330          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH62_MAIZE (Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.095e-23
Identity = 75/156 (48.08%), Postives = 93/156 (59.62%), Query Frame = 1
Query:  133 LGHAEKITVSKDQTVILLC---KACIGHEKLLQWRFTMEN-LQDFPEESC----TKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXXE-GVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLE 564
            LG  +K+TVSKD TVIL     K  I  E+  Q R  +EN   D+ +E       K S   AV+K+ G+++AEV EKKDR            E G+V    ++LLYA KELDKLQTAN  QKIGVQ IQ AL+  V  IA +AGV+G+ VV KLLE
Sbjct:  350 LGSCKKVTVSKDDTVILDGAGDKKSI-EERADQIRSAVENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLQTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLE 504          

HSP 2 Score: 39.2762 bits (90), Expect = 1.095e-23
Identity = 16/33 (48.48%), Postives = 23/33 (69.70%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFT 100
            +N +    K C +K PGFGE+RKA+L+D+A  T
Sbjct:  297 INKLRAGIKVCAVKAPGFGENRKANLQDLAILT 329          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH61_CUCMA (Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.425e-23
Identity = 71/162 (43.83%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  133 LGHAEKITVSKDQTVILLCKACIGHEKLLQWRF----------TMENLQDFPEESCTKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXXE-GVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLEGSKP 576
            LG  +KIT+SKD TVIL      G +K ++ R           T +  ++  +E   K S   AV+K+ G+++AEV EKKDR            E G+V    ++LLYA KELDKL TAN  QKIGVQ IQ AL+  V  IA +AGV+G+ VV KLLE   P
Sbjct:  348 LGSCKKITISKDDTVIL---DGAGDKKAIEERCDQIRSGIEASTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLPTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDDP 506          

HSP 2 Score: 40.817 bits (94), Expect = 1.425e-23
Identity = 19/36 (52.78%), Postives = 23/36 (63.89%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFTS*Q 109
            LN +    K C IK PGFGE+RKA L+D+A  T  Q
Sbjct:  295 LNKLRAGIKVCAIKAPGFGENRKAGLQDLAVLTGGQ 330          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60_BRANA (Chaperonin CPN60, mitochondrial OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.314e-23
Identity = 73/161 (45.34%), Postives = 93/161 (57.76%), Query Frame = 1
Query:  133 LGHAEKITVSKDQTVILLC----KACIGHEKLLQWRFTMENLQ-DFPEESC----TKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXXE-GVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGSV-VSKLLEGSKP 576
            LG+ +KITVSKD TV L      K  IG E+  Q R  +E  + D+ +E       K S   AV+K+ G++++EV EKKDR            E G+V    ++LLYA KELDKL TAN   KIGVQ IQ AL+  V  IA +AGV+G+V V KLLE   P
Sbjct:  350 LGNCKKITVSKDDTVFLGWGAGDKKAIG-ERCEQIRSMVEASESDYDKEKLQERLAKLSGGVAVLKIGGASESEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLSTANFDHKIGVQIIQNALKTPVYTIASNAGVEGAVIVGKLLESDNP 509          

HSP 2 Score: 40.0466 bits (92), Expect = 5.314e-23
Identity = 17/36 (47.22%), Postives = 23/36 (63.89%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFTS*Q 109
            LN +    K C +K PGFGE+RKA++ D+A  T  Q
Sbjct:  297 LNKLRAGIKVCAVKAPGFGENRKANMHDLATLTGAQ 332          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60B_ARATH (Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.915e-23
Identity = 71/159 (44.65%), Postives = 93/159 (58.49%), Query Frame = 1
Query:  136 GHAEKITVSKDQTVILLC---KACIGHEKLLQWRFTME-NLQDFPEESC----TKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXXE-GVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLEGSKP 576
            G+ +K+TVSKD TV+L     K  IG E+  Q R  +E +  D+ +E       K S   AV+K+ G+++ EV EKKDR            E G+V    ++LLYA KEL+KL TAN  QKIGVQ IQ AL+  V  IA +AGV+G+ VV KLLE   P
Sbjct:  349 GNCKKVTVSKDDTVVLDGAGDKQAIG-ERCEQIRSMVEASTSDYDKEKLQERLAKLSGGVAVLKIGGASETEVSEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELEKLSTANFDQKIGVQIIQNALKTPVYTIASNAGVEGAVVVGKLLEQDNP 506          

HSP 2 Score: 40.0466 bits (92), Expect = 6.915e-23
Identity = 18/36 (50.00%), Postives = 23/36 (63.89%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFTS*Q 109
            LN +    K C +K PGFGE+RKA+L D+A  T  Q
Sbjct:  295 LNKLRANIKVCAVKAPGFGENRKANLHDLAALTGAQ 330          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60A_ARATH (Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.171e-22
Identity = 69/163 (42.33%), Postives = 89/163 (54.60%), Query Frame = 1
Query:  133 LGHAEKITVSKDQTVIL-----------LCKACIGHEKLLQWRFTMENLQDFPEESCTKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXXE-GVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGSV-VSKLLEGSKP 576
            LG  +K+TVSKD TVIL            C+      +L    +  E LQ    E   K S   AV+K+ G+++AEV EKKDR            E G++    ++LLYA +EL+KL TAN  QKIGVQ IQ AL+  V  IA +AGV+G+V V KLLE   P
Sbjct:  347 LGTCKKVTVSKDDTVILDGAGDKKGIEERCEQIRSAIELSTSDYDKEKLQ----ERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGILPGGGVALLYAARELEKLPTANFDQKIGVQIIQNALKTPVYTIASNAGVEGAVIVGKLLEQDNP 505          

HSP 2 Score: 41.2022 bits (95), Expect = 1.171e-22
Identity = 18/33 (54.55%), Postives = 23/33 (69.70%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFT 100
            LN +    K C IK PGFGE+RKA+L+D+A  T
Sbjct:  294 LNKLRAGIKVCAIKAPGFGENRKANLQDLAALT 326          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60C_ARATH (Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.538e-20
Identity = 63/158 (39.87%), Postives = 87/158 (55.06%), Query Frame = 1
Query:  133 LGHAEKITVSKDQTVILLCKACIGHEKLLQWRF----------TMENLQDFPEESCTKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXXE-GVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLE 564
            LG A+K+TV++D T+IL      G +KL++ R           T    Q+  +E  +K S   AV KV G++++EV E+KDR            E G++    ++LLYA K LD LQT N  Q+ GVQ +Q AL+     IA +AG DGS VV KLLE
Sbjct:  347 LGTAKKVTVTRDDTIILHGG---GDKKLIEERCEELRSANEKSTSTFDQEKTQERLSKLSGGVAVFKVGGASESEVGERKDRVTDALNATRAAVEEGIIPGGGVALLYATKALDNLQTENEDQRRGVQIVQNALKAPAFTIAANAGYDGSLVVGKLLE 501          

HSP 2 Score: 37.3502 bits (85), Expect = 1.538e-20
Identity = 16/25 (64.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query:   26 KACVIKPPGFGESRKASLRDIAKFT 100
            K C IK PGFG++RKASL D+A  T
Sbjct:  302 KVCAIKAPGFGDNRKASLDDLAVLT 326          

HSP 3 Score: 25.7942 bits (55), Expect = 1.538e-20
Identity = 13/33 (39.39%), Postives = 18/33 (54.55%), Query Frame = 2
Query:  584 SVKVKNADMLMPEIVFPLKTIRAVLVEATSEML 682
            + K K  DM+   I+ P+K IR  L +A S  L
Sbjct:  511 AAKGKYVDMVKAGIIDPVKVIRTALTDAASVSL 543          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH601_RHORT (60 kDa chaperonin 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=groL1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.007e-16
Identity = 61/158 (38.61%), Postives = 92/158 (58.23%), Query Frame = 1
Query:  133 LGHAEKITVSKDQTVILL---CKACIGHEKLLQWRFTMENL-----QDFPEESCTKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXXE-GVVSV--MSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGSVVS-KLLEGS 570
            LG A+ +T++KD T I+     KA I   +  Q R T+E+      ++  +E   K S   AVI+V G+++ EV+EKKDR            E G+++   ++LL+A K LD L  AN  QK+G++ ++ AL+  V  IA +AGVDG+VV+ KLLE S
Sbjct:  317 LGTAKTVTITKDNTTIVDGAGVKADID-ARCAQIRATIEDTTSDYDREKLQERLAKLSGGVAVIRVGGASEVEVKEKKDRVDDAMHATRAAVEEGIIAGGGVALLHAAKALDALSPANADQKVGIEIVRRALQAPVRQIAENAGVDGAVVAGKLLESS 473          

HSP 2 Score: 31.9574 bits (71), Expect = 1.007e-16
Identity = 16/36 (44.44%), Postives = 20/36 (55.56%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFTS*Q 109
            +N +    K   +K PGFG+ RKA L DIA  T  Q
Sbjct:  264 VNRLRGGLKVASVKAPGFGDRRKAMLEDIAILTGGQ 299          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH602_RHORT (60 kDa chaperonin 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=groL2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.306e-16
Identity = 57/160 (35.62%), Postives = 92/160 (57.50%), Query Frame = 1
Query:  133 LGHAEKITVSKDQTVILLCKACIGHEKLLQWRFTM--ENLQDFP--------EESCTKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXXE-GVVSV--MSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGSVVS-KLLEGS 570
            LG A+K+T++K++T ++      G +K ++ R +    N++D          +E   K +   AVIKV G+ + EV+EKKDR            E GVV+   ++LL+A + LD ++ AN  Q +G++ ++ AL+  V  IA +AGVDG+VV+ KLLE S
Sbjct:  317 LGTAKKVTITKEETTLV---DGAGDKKDIEARCSQIRANIEDTSSDYDREKLQERLAKLAGGVAVIKVGGATETEVKEKKDRVDDAMHATRAAVEEGVVAGGGVALLHAIRSLDSVKGANPDQNVGIEIVRRALQAPVRQIAENAGVDGAVVAGKLLENS 473          

HSP 2 Score: 32.7278 bits (73), Expect = 6.306e-16
Identity = 16/36 (44.44%), Postives = 20/36 (55.56%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFTS*Q 109
            +N +    K   +K PGFG+ RKA L DIA  T  Q
Sbjct:  264 VNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQ 299          
The following BLAST results are available for this feature:
BLAST of DY260114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
CH61_MAIZE1.733e-2446.99Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=C... [more]
CH62_CUCMA8.418e-2444.17Chaperonin CPN60-2, mitochondrial OS=Cucurbita max... [more]
CH62_MAIZE1.095e-2348.08Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=C... [more]
CH61_CUCMA1.425e-2343.83Chaperonin CPN60-1, mitochondrial OS=Cucurbita max... [more]
CH60_BRANA5.314e-2345.34Chaperonin CPN60, mitochondrial OS=Brassica napus ... [more]
CH60B_ARATH6.915e-2344.65Chaperonin CPN60-like 1, mitochondrial OS=Arabidop... [more]
CH60A_ARATH1.171e-2242.33Chaperonin CPN60, mitochondrial OS=Arabidopsis tha... [more]
CH60C_ARATH1.538e-2039.87Chaperonin CPN60-like 2, mitochondrial OS=Arabidop... [more]
CH601_RHORT1.007e-1638.6160 kDa chaperonin 1 OS=Rhodospirillum rubrum (stra... [more]
CH602_RHORT6.306e-1635.6360 kDa chaperonin 2 OS=Rhodospirillum rubrum (stra... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YF19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260114 ID=DY260114; Name=DY260114; organism=Citrus clementina; type=EST; length=980bp
CTTAAATGGAGTGCTTACAGCAACCAAGGCTTGTGTCATAAAACCTCCTG
GATTTGGAGAAAGTAGGAAGGCTAGCCTTCGGGACATTGCCAAATTCACG
TCATGACAGGAAAAGATTTTGAATGCGTATCTCTTGGCCATGCTGAGAAG
ATTACGGTATCAAAGGATCAGACGGTTATCCTTCTTTGTAAGGCTTGCAT
AGGACACGAAAAGTTGTTACAGTGGAGATTCACAATGGAAAATTTACAAG
ATTTCCCTGAAGAGAGCTGTACAAAGCACTCTTATCTCGCTGCTGTTATA
AAGGTCTGTGGAAGTAATAAAGCTGAAGTGCGTGAAAAGAAGGATAGAGT
TGCTAATGCCATAAATGCTGTCAAGGCTGCAAAGGAAGGAGTTGTTAGTG
TGATGTCACTTTTATATGCCTGCAAGGAGTTGGATAAATTGCAAACTGCT
AACCATGGTCAGAAGATTGGTGTTCAAGCTATCCAATATGCTCTTGAGAT
GCTGGTGAGCGCGATTGCTTATAGCGCTGGAGTTGATGGGTCAGTTGTTA
GCAAGCTACTCGAGGGATCCAAGCCTAAACCCCTCGGTAAAGGTGAAAAA
TGCAGATATGCTTATGCCAGAAATTGTTTTTCCATTGAAAACCATAAGAG
CAGTCTTGGTGGAGGCTACAAGTGAGATGTTACCAAGACTTTGAAATTGA
GGCTCTTAAGGTGGCTCAGCTTGTCCTTCCAAGAATATTTGCAAAGAAAG
TTCCCGCTGATACAAACCCCCCAAGTAAAACAAAGGCGTAATGGAAGCTT
CCATCACCTTTCCCTGGGTGCCGTTATGGGTACCGGGATTTAAAACCCAA
ATTCCTCAGGGCACATTATATTTTATTTTTATTTTGGTTGAAAAAACAAT
ACATTAAACCTTTTTCCTAAACCATAACCCCAAAACAAAAAAACCGGAAT
AAATTGGGCCCCCCCGAAATTTCGCCCCCT
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