DY260115

Overview
NameDY260115
Unique NameDY260115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1102
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260115_ssr216 microsatellite DY260115_ssr216:216..227. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1419 contig Ccv1_Contig1419:1..1102. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260115 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 300.827 bits (769), Expect = 9.184e-81
Identity = 142/192 (73.96%), Postives = 164/192 (85.42%), Query Frame = 3
Query:  153 RPATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN--SGRAPFPMNQPHGGVFHAVGTKDGPTRGGLKKIEWSKAPFYA 722
            RPATF+EDFK  WS++H+RQ+E G+AIQLVLDQ++GCGFASKR+YLFGRVSMKIKL+PGDSAGTVTAFYMNS+T  VRDELDFEFLGNR+GQPY+VQTNI+A+GKGDREQRVNLWFDP+ DYH YTILW+H HIVFYVDDVPIR YKN  +    +P +QP G         D  TRGGL+KI+WSKAPFYA
Sbjct:   31 RPATFVEDFKAAWSESHIRQMEDGKAIQLVLDQSTGCGFASKRKYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTATVRDELDFEFLGNRSGQPYSVQTNIFAHGKGDREQRVNLWFDPSMDYHTYTILWSHKHIVFYVDDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYA 222          
BLAST of DY260115 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 1.621e-77
Identity = 136/192 (70.83%), Postives = 160/192 (83.33%), Query Frame = 3
Query:  153 RPATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN--SGRAPFPMNQPHGGVFHAVGTKDGPTRGGLKKIEWSKAPFYA 722
            RPA F +DF++ WSD H+ QI+GGRAIQL LD +SGCGFASK+QYLFGRVSMKIKL+PGDSAGTVTAFYMNS+T++VRDELDFEFLGNR+GQPYTVQTN++A+GKGDREQRVNLWFDP+ D+H Y I WNH  IVFYVD+VPIRVYKN  + + P+P  QP G         D  TRGG++KI WS+APFYA
Sbjct:   30 RPAKFEDDFRIAWSDTHITQIDGGRAIQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTDSVRDELDFEFLGNRSGQPYTVQTNVFAHGKGDREQRVNLWFDPSRDFHEYAISWNHLRIVFYVDNVPIRVYKNNEARKVPYPRFQPMGVYSTLWEADDWATRGGIEKINWSRAPFYA 221          
BLAST of DY260115 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 4.151e-57
Identity = 110/188 (58.51%), Postives = 131/188 (69.68%), Query Frame = 3
Query:  165 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG--RAPFPMNQPHGGVFHAVGTKDGPTRGGLKKIEWSKAPFYA 722
            F  ++  TW+  H++ + GG  IQL LD+ +G GF SK  YLFG  SM IKLVPGDSAGTVTAFY++S T    DE+DFEFLGNRTGQPY +QTN++  GKGDREQR+ LWFDP   YH Y++LWN + IVFYVDD PIRV+KNS      FP NQP           D  TRGGL+K +WSKAPF A
Sbjct:   31 FGRNYVPTWAFDHIKYLNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMYIKLVPGDSAGTVTAFYLSS-TNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTTQYHRYSVLWNMYQIVFYVDDYPIRVFKNSNDLGVKFPFNQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIA 217          
BLAST of DY260115 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 4.590e-56
Identity = 104/188 (55.32%), Postives = 131/188 (69.68%), Query Frame = 3
Query:  165 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG--RAPFPMNQPHGGVFHAVGTKDGPTRGGLKKIEWSKAPFYA 722
            F ++++ +W+  H++ + GG  + LVLD++SG GF SK+ YLFG  SMK+KLV GDSAG VTAFY++SN     DE+DFEFLGNRTGQPY +QTN++  GKGDREQR+ LWFDP   YH Y++LWN   IV +VDDVPIR +KNS      FP NQP           D  TRGGL+K +WS APF A
Sbjct:   32 FWKNYEPSWASHHIKYLSGGSTVDLVLDRSSGAGFQSKKSYLFGHFSMKLKLVGGDSAGVVTAFYLSSNNAE-HDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKGYHSYSVLWNTFQIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTDWSNAPFTA 218          
BLAST of DY260115 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 1.335e-55
Identity = 105/188 (55.85%), Postives = 130/188 (69.15%), Query Frame = 3
Query:  165 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG--RAPFPMNQPHGGVFHAVGTKDGPTRGGLKKIEWSKAPFYA 722
            F  ++  TW+  H++ + GG  + LVLD+ +G GF SK  YLFG  SM IK+V GDSAGTVTAFY++S      DE+DFEFLGNRTGQPY +QTN++  G G+REQR+NLWFDP+ DYH Y++LWN + IVF+VDDVPIRV+KNS      FP NQP           D  TRGGL+K  W KAPF A
Sbjct:   32 FGRNYFPTWAFDHIKYLNGGSEVHLVLDKYTGTGFQSKGSYLFGHFSMHIKMVAGDSAGTVTAFYLSSQNSE-HDEIDFEFLGNRTGQPYILQTNVFTGGAGNREQRINLWFDPSKDYHSYSVLWNMYQIVFFVDDVPIRVFKNSKDVGVKFPFNQPMKIYSSLWNADDWATRGGLEKTNWEKAPFVA 218          
BLAST of DY260115 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.975e-55
Identity = 107/188 (56.91%), Postives = 131/188 (69.68%), Query Frame = 3
Query:  165 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG--RAPFPMNQPHGGVFHAVGTKDGPTRGGLKKIEWSKAPFYA 722
            F  ++  TW+  H++   GG  IQL LD+ +G GF SK  YLFG  SM IK+VPGDSAGTVTAFY++S      DE+DFEFLGNRTGQPY +QTN++  GKGDREQR+ LWFDP  +YH Y+ILWN + IVF+VD+VPIRV+KNS      FP +QP           D  TRGGL+K +WSKAPF A
Sbjct:   33 FGRNYVPTWAFDHIKYFNGGSDIQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQNAE-HDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSILWNLYQIVFFVDEVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIA 219          
BLAST of DY260115 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 2.519e-54
Identity = 102/188 (54.26%), Postives = 130/188 (69.15%), Query Frame = 3
Query:  165 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG--RAPFPMNQPHGGVFHAVGTKDGPTRGGLKKIEWSKAPFYA 722
            F +++  TW+  H+  + GGR +QL LD+ +G GF ++  YLFG  SM IKLV GDSAGTVTAFY++S      DE+DFEFLGNRTGQPY +QTN+++ GKGDREQR+ LWFDP  DYH Y++LWN + I F+VDD PIRV+KNS      +P +QP           D  TRGG +K +WSKAPF A
Sbjct:   32 FDKNYVPTWAQDHIHYVNGGREVQLSLDKTTGTGFQTRGSYLFGHFSMHIKLVGGDSAGTVTAFYLSSQNSE-HDEIDFEFLGNRTGQPYILQTNVFSGGKGDREQRIYLWFDPTKDYHSYSVLWNLYMIAFFVDDTPIRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVA 218          
BLAST of DY260115 vs. ExPASy Swiss-Prot
Match: XTH8_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 9.571e-54
Identity = 103/191 (53.93%), Postives = 127/191 (66.49%), Query Frame = 3
Query:  162 TFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTEN--VRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAP----FPMNQPHGGVFHAVGTKDGPTRGGLKKIEWSKAPF 716
            +F ++F + WS+ H    + G    L LD ++GCGF +K  Y FG  SMK+KLV GDSAG VTA+YM S       RDE+DFEFLGNRTGQPY +QTN+Y NG G+RE R +LWFDP  DYH Y+ILWN+H +VF+VD VPIRVYKNS + P    FP  +P           D  TRGGL+K +W KAPF
Sbjct:   24 SFEDNFNIMWSENHFTTSDDGEIWNLSLDNDTGCGFQTKHMYRFGWFSMKLKLVGGDSAGVVTAYYMCSENGAGPERDEIDFEFLGNRTGQPYIIQTNVYKNGTGNREMRHSLWFDPTKDYHTYSILWNNHQLVFFVDRVPIRVYKNSDKVPNNDFFPNQKPMYLFSSIWNADDWATRGGLEKTDWKKAPF 214          
BLAST of DY260115 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.250e-53
Identity = 100/188 (53.19%), Postives = 130/188 (69.15%), Query Frame = 3
Query:  165 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG--RAPFPMNQPHGGVFHAVGTKDGPTRGGLKKIEWSKAPFYA 722
            F ++++ +W+  H++ + GG    L+LD++SG GF SK+ YLFG  SMK++LV GDSAG VTAFY++SN     DE+DFEFLGNRTGQPY +QTN++  GKG+REQR+ LWFDP   YH Y++LWN + IV +VDDVPIR +KNS      FP NQP           D  TRGGL+K  W+ APF A
Sbjct:   33 FWKNYEPSWASHHIKFLNGGTTTDLILDRSSGAGFQSKKSYLFGHFSMKMRLVGGDSAGVVTAFYLSSNNAE-HDEIDFEFLGNRTGQPYILQTNVFTGGKGNREQRIYLWFDPTKGYHSYSVLWNTYLIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTNWANAPFTA 219          
BLAST of DY260115 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 3.637e-53
Identity = 103/188 (54.79%), Postives = 127/188 (67.55%), Query Frame = 3
Query:  165 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPHGGVFHAVGTKDGPTRGGLKKIEWSKAPFYA 722
            F  ++  TW+  H++   GG  IQL LD+ +G GF +K  YLFG  SM IK+VPGDSAGTVTAF ++S      DE+DFEFLGNRTGQPY +QTN++  GKGDREQR+ LWFDP   YH Y++LWN + IVF VD++PIRV+KN       FP NQP           D  TRGGL+K +WSKAPF A
Sbjct:   32 FGRNYIPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQTKGSYLFGHFSMNIKMVPGDSAGTVTAFCLSSQNAE-HDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSVLWNMYQIVFLVDNIPIRVFKNLKELGVKFPFNQPMKVYNSLWNADDWATRGGLEKTDWSKAPFVA 218          
The following BLAST results are available for this feature:
BLAST of DY260115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
XTH6_ARATH9.184e-8173.96Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH7_ARATH1.621e-7770.83Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHA_PHAAN4.151e-5758.51Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_TOBAC4.590e-5655.32Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH5_ARATH1.335e-5555.85Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_SOYBN2.975e-5556.91Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_WHEAT2.519e-5454.26Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH8_ARATH9.571e-5453.93Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_SOLLC1.250e-5353.19Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHB_PHAAN3.637e-5354.79Probable xyloglucan endotransglucosylase/hydrolase... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YF20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260115 ID=DY260115; Name=DY260115; organism=Citrus clementina; type=EST; length=1102bp
TAACCACAACATTTTATTAAAGTTCTCTTTCTAATTAGTAACAGATAATA
TTTTATTGTACGGCTTGTTTTACAGCTATGGCTATCCTAAGAAATGCAAT
AGCATTATTTGTGTTGCTTTACTGTCTTGTATCCTGCTCTTGCGTTTTAG
GGCGACCGGCTACTTTTCTTGAGGATTTTAAAGTCACATGGTCCGATGCC
CATCTCAGGCAAATCGAGGGAGGGAGGGCCATCCAGCTAGTTCTAGACCA
AAATTCAGGATGTGGGTTTGCTTCCAAAAGGCAGTACTTGTTCGGGCGTG
TAAGCATGAAGATCAAGCTCGTTCCTGGAGACTCTGCTGGAACTGTCACT
GCATTTTATATGAATTCCAACACCGAAAATGTGAGAGACGAGCTTGATTT
TGAGTTCCTGGGAAACCGAACGGGTCAGCCTTACACGGTCCAGACCAATA
TCTATGCAAATGGAAAAGGCGATAGAGAACAGAGAGTGAACCTCTGGTTT
GACCCTGCTGCAGATTATCACCTTTACACTATTCTCTGGAACCATCACCA
TATTGTCTTCTATGTGGATGATGTGCCCATCAGGGTTTACAAAAACAGTG
GAAGGGCTCCATTTCCAATGAACCAACCCCATGGGGGTGTATTCCACGCT
GTGGGAACCAAAGACGGGCCAACAAGAGGTGGTCTAAAAAAAATAGAATG
GAGCAAAGCTCCTTTTTATGCTTAATTACAAAAACCTTGAAATTGAGGGC
CGGCCAGTTCCCGGAACCAACAAATGTGGCCCCGAACCCAGGTAACGGGC
GGGAGGCAAAATATTATCCAAGCCCCTCCCCTCTCTGGAAGCAAGAAAAA
ACACAAGGGTTCCTCCCCACCCCACCAGAACCTATGATTTATGGCCTGGA
TAAAAACAAAAAACCCCCGACCCCCCCCCCGGAATGGCCTTGCCGGGGCA
TAAAAATTCAACCCCCCCCATTTAATTTAAAACGCTGGAACGGCAACCCC
CAATCTCCTAACCCAAAACGGGAATTATTACTTCCCCGAAACACCTCTCT
TTTGTTATATTCCTCTTATTTGTGTGTGAAAAAAACTTCATACCCCCATA
CT
back to top