DY260119

Overview
NameDY260119
Unique NameDY260119
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1119
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1420 contig Ccv1_Contig1420:1..1119. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260119 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 8.055e-77
Identity = 122/151 (80.79%), Postives = 134/151 (88.74%), Query Frame = 1
Query:  184 YEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFLLHDEKTGKSSVNVIDAKTMSTDPVAIVQITPRVPYGFPAF 636
            YEMRFN+KTG ASQK+LSAS VDFPRVNE YTGRKQRYVYGT LDSIAKVTGIIKFDLHAEPD  KTKLEVGGNV+G++DLGPGRFGSEAV+VPR PGT SEED GYLIF +HDE TGKS V+VIDAK MS +PVA+V++  RVPYGF AF
Sbjct:  378 YEMRFNMKTGEASQKKLSASTVDFPRVNESYTGRKQRYVYGTTLDSIAKVTGIIKFDLHAEPDSGKTKLEVGGNVQGLYDLGPGRFGSEAVYVPRVPGTDSEEDDGYLIFFVHDENTGKSFVHVIDAKRMSAEPVAVVELPQRVPYGFHAF 528          

HSP 2 Score: 59.3066 bits (142), Expect = 8.055e-77
Identity = 28/43 (65.12%), Postives = 37/43 (86.05%), Query Frame = 2
Query:    2 DEVLLITCRLDKPDLDMVNGAVKEKLENFSNELWDTCEIFFNL 130
            DE++LITCRL+ P+LD+V GAVKEKL+NFSNEL+   E+ FN+
Sbjct:  345 DEIVLITCRLENPNLDVVGGAVKEKLDNFSNELY---EMRFNM 384          
BLAST of DY260119 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.787e-76
Identity = 119/151 (78.81%), Postives = 131/151 (86.75%), Query Frame = 1
Query:  184 YEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFLLHDEKTGKSSVNVIDAKTMSTDPVAIVQITPRVPYGFPAF 636
            YEMRFN+KTG ASQK+LS SAVDFPR+NE YT RKQRYVYGTILD+I KV GIIKFDLHAEP+  K KLEVGGNV+GIFDLGPGR+GSEAVFVPRE G  SEED GYLIF +HDE TGKS VNVIDAKTMS +PVA+V++  RVPYGF AF
Sbjct:  382 YEMRFNMKTGAASQKQLSVSAVDFPRINESYTTRKQRYVYGTILDNITKVKGIIKFDLHAEPEAGKKKLEVGGNVQGIFDLGPGRYGSEAVFVPRERGIKSEEDDGYLIFFVHDENTGKSEVNVIDAKTMSAEPVAVVELPNRVPYGFHAF 532          

HSP 2 Score: 65.0846 bits (157), Expect = 1.787e-76
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 2
Query:    2 DEVLLITCRLDKPDLDMVNGAVKEKLENFSNELWDTCEIFFNL 130
            DEV+LITCRL+ PDLDMVNGAVKEKLENF NEL+   E+ FN+
Sbjct:  349 DEVVLITCRLENPDLDMVNGAVKEKLENFKNELY---EMRFNM 388          
BLAST of DY260119 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 3.956e-73
Identity = 117/151 (77.48%), Postives = 131/151 (86.75%), Query Frame = 1
Query:  184 YEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFLLHDEKTGKSSVNVIDAKTMSTDPVAIVQITPRVPYGFPAF 636
            YEMRFN+KTG ASQK+LSAS VDFPRVNE YTGRKQRYVYGT LDSIAKVTGIIKFDLHAEPD  K KLEVGGNV+G++DLGPG+FGSEAV++PR PG  SEED GYL+  +HDE  GKS V+VIDAKTMS DPVA+V++  RVPYGF AF
Sbjct:  380 YEMRFNMKTGEASQKKLSASTVDFPRVNENYTGRKQRYVYGTTLDSIAKVTGIIKFDLHAEPDHGKEKLEVGGNVQGLYDLGPGKFGSEAVYIPRVPGIESEEDDGYLVLFVHDENAGKSFVHVIDAKTMSADPVAVVELPNRVPYGFHAF 530          

HSP 2 Score: 55.0694 bits (131), Expect = 3.956e-73
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 2
Query:    2 DEVLLITCRLDKPDLDMVNGAVKEKLENFSNELWDTCEIFFNL 130
            DEV+LITCRL  P LD V G V+EKLENFSNEL+   E+ FN+
Sbjct:  347 DEVVLITCRLQNPKLDNVGGTVQEKLENFSNELY---EMRFNM 386          
BLAST of DY260119 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 5.632e-72
Identity = 113/150 (75.33%), Postives = 131/150 (87.33%), Query Frame = 1
Query:  184 YEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFLLHDEKTGKSSVNVIDAKTMSTDPVAIVQITPRVPYGFPA 633
            YEMRFN+KTG ASQK+LSASAVDFPR+NECYTG+KQRYVYGTILDSIAKVTGIIKFDLHAE +  K  LEVGGN++GI+DLG GR+GSEA++VPRE   ++EED GYLIF +HDE TGKS V VIDAKTMS +PVA+V++  RVPYGF A
Sbjct:  378 YEMRFNMKTGSASQKKLSASAVDFPRINECYTGKKQRYVYGTILDSIAKVTGIIKFDLHAEAETGKRMLEVGGNIKGIYDLGEGRYGSEAIYVPRE---TAEEDDGYLIFFVHDENTGKSCVTVIDAKTMSAEPVAVVELPHRVPYGFHA 524          

HSP 2 Score: 61.2326 bits (147), Expect = 5.632e-72
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 2
Query:    2 DEVLLITCRLDKPDLDMVNGAVKEKLENFSNELWDTCEIFFNL 130
            DEV+LITCRL+ PDLDMV+G VKEKLENF NEL+   E+ FN+
Sbjct:  345 DEVVLITCRLENPDLDMVSGKVKEKLENFGNELY---EMRFNM 384          
BLAST of DY260119 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 7.060e-20
Identity = 55/148 (37.16%), Postives = 87/148 (58.78%), Query Frame = 1
Query:  187 EMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGT-SSEEDVGYLIFLLHDEKTGKSSVNVIDAKTMSTDPVAIVQITPRVPYGF 627
            +++ +L TG+  +  +SA  +DF  +N  + GR  RYVY  I D + K++G++K D+     ++ T        R ++  G G +G E  FV R+PG   +EED GY++  +HDE TG+S   V+DAK+   + VA V++  RVPYGF
Sbjct:  443 KVKIDLVTGIVRRHPISARNLDFAVINPAFLGRCSRYVYAAIGDPMPKISGVVKLDVSKGDRDDCTV------ARRMY--GSGCYGGEPFFVARDPGNPEAEEDDGYVVTYVHDEVTGESKFLVMDAKSPELEIVAAVRLPRRVPYGF 582          
BLAST of DY260119 vs. ExPASy Swiss-Prot
Match: ZCD_CROSA (Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplast OS=Crocus sativus GN=ZCD PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.283e-17
Identity = 56/149 (37.58%), Postives = 79/149 (53.02%), Query Frame = 1
Query:  193 RFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIF---DLGPGRFGSEAVFVPREPGTSS-EEDVGYLIFLLHDEKTGKSSVNVIDAKTMSTDPVAIVQITPRVPYGF 627
            R  LK+G  S+  LSA  +DF  ++  Y+GRK RY Y  + D + K+ G++K D            E+ G    +    + G G FG E  FVP     S  EED GY++  LHDE  G+SS  V+DA++   + +A V +  RVPYGF
Sbjct:  218 RIELKSGSVSRTLLSAENLDFGVIHRGYSGRKSRYAYLGVGDPMPKIRGVVKVDF-----------ELAGRGECVVARREFGVGCFGGEPFFVPASSKKSGGEEDDGYVVSYLHDEGKGESSFVVMDARSPELEILAEVVLPRRVPYGF 355          
BLAST of DY260119 vs. ExPASy Swiss-Prot
Match: NCED6_ARATH (9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.432e-14
Identity = 52/148 (35.14%), Postives = 75/148 (50.68%), Query Frame = 1
Query:  187 EMRFNLKTGLASQKRLSASA-VDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFLLHDEKTGKSSVNVIDAKTMSTDPVAIVQITPRVPYGF 627
            E+R N++T  +++K +     ++   +N  Y GRK ++VY  I D   K +GI K D+      E             F+ GP RFG E  FVP   G   EED GY++  + DE+  +S   V+DA  M    VA V++  RVPYGF
Sbjct:  433 EIRLNMRTKESNRKVIVTGVNLEAGHINRSYVGRKSQFVYIAIADPWPKCSGIAKVDIQNGTVSE-------------FNYGPSRFGGEPCFVPEGEG---EEDKGYVMGFVRDEEKDESEFVVVDATDMK--QVAAVRLPERVPYGF 562          
BLAST of DY260119 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.684e-13
Identity = 52/149 (34.90%), Postives = 78/149 (52.35%), Query Frame = 1
Query:  187 EMRFNLKTGLASQKRLSASAVDFPR--VNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFLLHDEKTGKSSVNVIDAKTMSTDPVAIVQITPRVPYGF 627
            E+R NLKTG ++++ + +  V+     VN    GRK RY Y  + +   KV+G  K DL              G +R  +  G G++G E +F+P   G   EED GY++  +HDE+  KS + +I+A  M  +  A V +  RVPYGF
Sbjct:  511 EIRLNLKTGESTRRPVISEQVNLEAGMVNRNLLGRKTRYAYLALTEPWPKVSGFAKVDLST------------GEIRK-YIYGEGKYGGEPLFLPSGDG---EEDGGYIMVFVHDEEKVKSELQLINAVNMKLE--ATVTLPSRVPYGF 641          
BLAST of DY260119 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.200e-13
Identity = 51/152 (33.55%), Postives = 81/152 (53.29%), Query Frame = 1
Query:  187 EMRFNLKTGLASQKRLSASA-----VDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFLLHDEKTGKSSVNVIDAKTMSTDPVAIVQITPRVPYGF 627
            E+R NLKTG ++++ + ++      ++   VN    GRK ++ Y  + +   KV+G  K DL     E K  L            G  R+G E +F+P E G   EED GY++  +HDEKT KS + +++A ++  +  A V++  RVPYGF
Sbjct:  451 EIRLNLKTGESTRRPIISNEDQQVNLEAGMVNRNMLGRKTKFAYLALAEPWPKVSGFAKVDLTT--GEVKKHL-----------YGDNRYGGEPLFLPGEGG---EEDEGYILCFVHDEKTWKSELQIVNAVSLEVE--ATVKLPSRVPYGF 584          
BLAST of DY260119 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.873e-13
Identity = 51/153 (33.33%), Postives = 79/153 (51.63%), Query Frame = 1
Query:  187 EMRFNLKTGLASQKRLSASA----VDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSE--EDVGYLIFLLHDEKTGKSSVNVIDAKTMSTDPVAIVQITPRVPYGF 627
            E+R + +TG ++++ +   +    ++   VN    GR+ RY Y  + +   KV+G  K DL      E TK          F+ G GRFG E  FVP +P  +    ED GY++  +HDE+ G S + V++A  M  +  A VQ+  RVP+GF
Sbjct:  452 EIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTG---ELTK----------FEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADMRLE--ATVQLPSRVPFGF 589          
The following BLAST results are available for this feature:
BLAST of DY260119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CCD1_PEA8.055e-7780.79Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD_CROSA1.787e-7678.81Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]
CCD1_PHAVU3.956e-7377.48Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_ARATH5.632e-7275.33Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD4_ARATH7.060e-2037.16Probable carotenoid cleavage dioxygenase 4, chloro... [more]
ZCD_CROSA4.283e-1737.58Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromo... [more]
NCED6_ARATH4.432e-1435.149-cis-epoxycarotenoid dioxygenase NCED6, chloropla... [more]
NCED9_ARATH1.684e-1334.909-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
NCED3_ARATH2.200e-1333.559-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
NCED1_MAIZE2.873e-1333.339-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YG03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260119 ID=DY260119; Name=DY260119; organism=Citrus clementina; type=EST; length=1119bp
GGATGAAGTGCTTTTGATCACCTGCCGCCTAGACAAGCCGGATCTAGACA
TGGTCAATGGGGCTGTCAAAGAAAAGCTAGAAAATTTCTCAAATGAACTG
TGGGATACCTGTGAAATATTCTTTAATTTGTAGTACTTCTTCCACTGCTA
AGTTTGTTCTGATTGTTTATTTCTATAAGCAGGTATGAGATGAGATTCAA
CTTGAAAACTGGCCTAGCTTCACAAAAGAGATTATCGGCATCCGCTGTTG
ATTTTCCTAGGGTGAATGAGTGCTACACTGGCAGGAAGCAAAGATATGTG
TATGGAACAATACTAGATAGCATTGCAAAAGTCACAGGGATCATCAAATT
TGATCTGCATGCTGAACCAGACGAAGAGAAAACAAAGCTTGAAGTTGGAG
GAAATGTGAGAGGCATCTTTGATCTGGGCCCTGGAAGATTTGGTTCAGAG
GCTGTTTTTGTTCCTAGAGAGCCTGGCACCTCTTCTGAAGAAGATGTTGG
TTACTTAATATTCCTCCTCCATGATGAGAAAACCGGAAAGTCATCCGTGA
ACGTGATTGATGCCAAAACCATGTCCACCGATCCTGTTGCCATTGTCCAA
ATTACCCCAAGGGTTCCATACGGATTTCCTGCCTTCCTTTGTGCCCGAGG
AACACCTTTCAAGAGCAAGCCAAATTGTGATCGCGGCCAGAGACCTTGTG
ACAAGTAAAAACCAGAGCGATAAATTAGAAATAAATCCAAAACCCCCCCC
CCGAGCCGCGTTGGGTTTGGGGGTTATGTCCTTATCGTACACCCTAAACA
CCCCCGCCGCACCCAAAAACTTACCTTTGAATTTTTGTAATTAATTTTTC
CCACCCCAGTTATCCCCCCCCCCAAAAATTATTTTCATCCGGTTTTTCTA
GCCCTAATTTCCCCAATGGGCCCAAACCGGAAGTTCCTCTTTTTACTTGG
AAAACACCCCCAACTTCTTCCCACTTTTGCAAAAACAAACAAAAAACCCA
AACACCACCCCCCCCTTTTCCCGCCACACACTTCGCGCCTCCCAAACAAA
ACCCCTCTCTCTCACCACCTCCCTCCCCCCCCCCCAACCAGCTCCCCCTT
CCTCCCTCCAAATACTAAA
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